mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-10-28 02:58:18 +08:00
Nicola Soranzo
30f60493c3
with manual fixes to 3 files to make them compatible with black 22.12.0 . We need to keep black pinned at `<23` until we vendorise `packaging`, since the new version of black depends on `packaging >=22.0` which is the version where `LegacyVersion` (which we use for tool lineages) was removed.
61 lines
2.6 KiB
Python
61 lines
2.6 KiB
Python
from galaxy_test.driver import integration_util
|
|
|
|
|
|
class TestEdamToolboxIntegration(integration_util.IntegrationTestCase):
|
|
framework_tool_and_types = True
|
|
|
|
@classmethod
|
|
def handle_galaxy_config_kwds(cls, config):
|
|
super().handle_galaxy_config_kwds(config)
|
|
config["edam_panel_views"] = "merged"
|
|
|
|
def test_edam_toolbox(self):
|
|
index = self.galaxy_interactor.get("tools", data=dict(in_panel=True, view="ontology:edam_merged"))
|
|
index.raise_for_status()
|
|
index_as_list = index.json()
|
|
sections = [x for x in index_as_list if x["model_class"] == "ToolSection"]
|
|
section_names = [s["name"] for s in sections]
|
|
assert "Mapping" in section_names
|
|
mapping_section = [s for s in sections if s["name"] == "Mapping"][0]
|
|
mapping_section_elems = mapping_section["elems"]
|
|
# make sure our mapper tool was mapped using Edam correctly...
|
|
assert [x for x in mapping_section_elems if x["id"] == "mapper"]
|
|
|
|
config_index = self.galaxy_interactor.get("configuration")
|
|
config_index.raise_for_status()
|
|
panel_views = config_index.json()["panel_views"]
|
|
assert len(panel_views) > 1
|
|
assert isinstance(panel_views, dict)
|
|
edam_panel_view = panel_views["ontology:edam_merged"]
|
|
assert edam_panel_view["view_type"] == "ontology"
|
|
|
|
|
|
class TestEdamToolboxDefaultIntegration(integration_util.IntegrationTestCase):
|
|
framework_tool_and_types = True
|
|
|
|
@classmethod
|
|
def handle_galaxy_config_kwds(cls, config):
|
|
super().handle_galaxy_config_kwds(config)
|
|
config["edam_panel_views"] = "topics"
|
|
config["default_panel_view"] = "ontology:edam_topics"
|
|
|
|
def test_edam_toolbox(self):
|
|
index = self.galaxy_interactor.get("tools", data=dict(in_panel=True))
|
|
index.raise_for_status()
|
|
index_as_list = index.json()
|
|
sections = [x for x in index_as_list if x["model_class"] == "ToolSection"]
|
|
section_names = [s["name"] for s in sections]
|
|
assert "Mapping" in section_names
|
|
mapping_section = [s for s in sections if s["name"] == "Mapping"][0]
|
|
mapping_section_elems = mapping_section["elems"]
|
|
# make sure our mapper tool was mapped using Edam correctly...
|
|
assert [x for x in mapping_section_elems if x["id"] == "mapper"]
|
|
|
|
config_index = self.galaxy_interactor.get("configuration")
|
|
config_index.raise_for_status()
|
|
panel_views = config_index.json()["panel_views"]
|
|
assert len(panel_views) > 1
|
|
assert isinstance(panel_views, dict)
|
|
edam_panel_view = panel_views["ontology:edam_topics"]
|
|
assert edam_panel_view["view_type"] == "ontology"
|