galaxy

genebed_maf_to_fasta.xml

Add a new metadata type of Metadata Files.

2008-10-22 13:49:22 -04:00

interval2maf_pairwise.xml

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

interval2maf.py

Add a new metadata type of Metadata Files.

2008-10-22 13:49:22 -04:00

interval2maf.xml

Add a new metadata type of Metadata Files.

2008-10-22 13:49:22 -04:00

interval_maf_to_merged_fasta.py

Add a new metadata type of Metadata Files.

2008-10-22 13:49:22 -04:00

interval_maf_to_merged_fasta.xml

Add a new metadata type of Metadata Files.

2008-10-22 13:49:22 -04:00

maf_by_block_number.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

maf_by_block_number.xml

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

maf_filter.py

Misc tool cleanup: eliminated all references to python2.3 / python2.4, imported galaxy eggs in several missed tools. Commented Pattern Matching tool section from tool_conf.xml.sample since tool is not functional. Added job runner info for short read tools in universe_wsgi.ini.sample.

2008-04-25 13:04:55 +00:00

maf_filter.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

maf_limit_size.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

maf_limit_size.xml

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

maf_limit_to_species.py

Misc tool cleanup: eliminated all references to python2.3 / python2.4, imported galaxy eggs in several missed tools. Commented Pattern Matching tool section from tool_conf.xml.sample since tool is not functional. Added job runner info for short read tools in universe_wsgi.ini.sample.

2008-04-25 13:04:55 +00:00

maf_limit_to_species.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

maf_reverse_complement.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

maf_reverse_complement.xml

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

maf_stats.py

Add a new metadata type of Metadata Files.

2008-10-22 13:49:22 -04:00

maf_stats.xml

Add a new metadata type of Metadata Files.

2008-10-22 13:49:22 -04:00

maf_thread_for_species.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

maf_thread_for_species.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

maf_to_bed_code.py

merging from central

2008-12-02 10:55:17 -05:00

maf_to_bed.py

Misc tool cleanup: eliminated all references to python2.3 / python2.4, imported galaxy eggs in several missed tools. Commented Pattern Matching tool section from tool_conf.xml.sample since tool is not functional. Added job runner info for short read tools in universe_wsgi.ini.sample.

2008-04-25 13:04:55 +00:00

maf_to_bed.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

maf_to_fasta_concat.py

Misc tool cleanup: eliminated all references to python2.3 / python2.4, imported galaxy eggs in several missed tools. Commented Pattern Matching tool section from tool_conf.xml.sample since tool is not functional. Added job runner info for short read tools in universe_wsgi.ini.sample.

2008-04-25 13:04:55 +00:00

maf_to_fasta_multiple_sets.py

Misc tool cleanup: eliminated all references to python2.3 / python2.4, imported galaxy eggs in several missed tools. Commented Pattern Matching tool section from tool_conf.xml.sample since tool is not functional. Added job runner info for short read tools in universe_wsgi.ini.sample.

2008-04-25 13:04:55 +00:00

maf_to_fasta.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00