mirror of
https://github.com/galaxyproject/galaxy.git
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Bjoern Gruening
54 lines
1.7 KiB
Plaintext
54 lines
1.7 KiB
Plaintext
{
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"cells": [
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"# Welcome to the interactive Galaxy IPython Notebook."
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]
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},
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"You can access your data via the dataset number. Using a Python kernel, you can access dataset number 42 with ``handle = open(get(42), 'r')``.\n",
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"To save data, write your data to a file, and then call ``put('filename.txt')``. The dataset will then be available in your galaxy history.\n<br>",
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"When using a non-Python kernel, ``get`` and ``put`` are available as command-line tools, which can be accessed using system calls in R, Julia, and Ruby. For example, to read dataset number 42 into R, you can write ```handle <- file(system('get -i 42', intern = TRUE))```.\n",
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"To save data in R, write the data to a file and then call ``system('put -p filename.txt')``.\n",
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"Notebooks can be saved to Galaxy by clicking the large green button at the top right of the IPython interface.<br>\n",
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"More help and informations can be found on the project [website](https://github.com/bgruening/docker-jupyter-notebook)."
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]
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},
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{
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"cell_type": "code",
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"execution_count": 1,
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"metadata": {
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"collapsed": false
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},
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"outputs": [],
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"source": []
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}
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],
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"metadata": {
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"kernelspec": {
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"display_name": "Python 2",
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"language": "python",
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"name": "python2"
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},
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"language_info": {
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"codemirror_mode": {
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"name": "ipython",
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"version": 2
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},
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"file_extension": ".py",
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"mimetype": "text/x-python",
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython2",
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"version": "2.7.10"
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}
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},
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"nbformat": 4,
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"nbformat_minor": 0
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}
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