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61 lines
2.1 KiB
Python
61 lines
2.1 KiB
Python
import os
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from galaxy_test.base.populators import DatasetPopulator
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from galaxy_test.driver import integration_util
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from .test_containerized_jobs import (
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disable_dependency_resolution,
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MulledJobTestCases,
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skip_if_container_type_unavailable,
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)
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SCRIPT_DIRECTORY = os.path.abspath(os.path.dirname(__file__))
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EMBEDDED_PULSAR_JOB_CONFIG_FILE_SINGULARITY = os.path.join(SCRIPT_DIRECTORY, "embedded_pulsar_singularity_job_conf.yml")
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EMBEDDED_PULSAR_JOB_CONFIG_FILE_DOCKER = os.path.join(SCRIPT_DIRECTORY, "embedded_pulsar_docker_job_conf.yml")
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class BaseEmbeddedPulsarContainerIntegrationTestCase(integration_util.IntegrationTestCase):
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dataset_populator: DatasetPopulator
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job_config_file: str
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jobs_directory: str
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framework_tool_and_types = True
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@classmethod
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def handle_galaxy_config_kwds(cls, config) -> None:
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super().handle_galaxy_config_kwds(config)
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cls.jobs_directory = cls._test_driver.mkdtemp()
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config["jobs_directory"] = cls.jobs_directory
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config["job_config_file"] = cls.job_config_file
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disable_dependency_resolution(config)
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def setUp(self) -> None:
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super().setUp()
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self.dataset_populator = DatasetPopulator(self.galaxy_interactor)
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@classmethod
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def setUpClass(cls) -> None:
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skip_if_container_type_unavailable(cls)
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super().setUpClass()
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class TestEmbeddedSingularityPulsarIntegration(BaseEmbeddedPulsarContainerIntegrationTestCase, MulledJobTestCases):
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dataset_populator: DatasetPopulator
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# singularity passes $HOME by default
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default_container_home_dir = os.environ.get("HOME", "/")
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job_config_file = EMBEDDED_PULSAR_JOB_CONFIG_FILE_SINGULARITY
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container_type = "singularity"
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class TestEmbeddedDockerPulsarIntegration(BaseEmbeddedPulsarContainerIntegrationTestCase, MulledJobTestCases):
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dataset_populator: DatasetPopulator
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job_config_file = EMBEDDED_PULSAR_JOB_CONFIG_FILE_DOCKER
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container_type = "docker"
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instance = integration_util.integration_module_instance(TestEmbeddedSingularityPulsarIntegration)
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test_tools = integration_util.integration_tool_runner(
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[
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"tool_directory_docker",
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]
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)
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