Nicola Soranzo 3d57c22b63 Fix I201 errors from flake8-import-order ...

Also fix Python3 compatibility.
Remove unused method
galaxy.tools.parameters.sanitize.ToolParameterSanitizer.restore_param() .

2016-11-23 18:31:04 +00:00

..

api

Fix I201 errors from flake8-import-order

2016-11-23 18:31:04 +00:00

auth

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

cleanup_datasets

Fix I201 errors from flake8-import-order

2016-11-23 18:31:04 +00:00

communication

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

data_libraries

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

loc_files

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

metagenomics

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

microbes

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

migrate_tools

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

others

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

slideshow

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

taxonomy

…

tool_shed

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

tools

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

__init__.py

…

binary_compatibility.py

Add the scientific platform (Scientific Linux) as binary compatible

2016-02-03 13:33:42 -05:00

bootstrap_history.py

Fix a bunch of errors reported by Sphinx

2016-10-24 19:42:19 +01:00

build_toolbox.py

Fix I201 errors from flake8-import-order

2016-11-23 18:31:04 +00:00

build_universe_config.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

check_eggs.py

Add stub fetch_eggs.py/check_eggs.py for people whose build/test/run

2015-11-06 11:06:11 -05:00

check_galaxy.py

Fix I201 errors from flake8-import-order

2016-11-23 18:31:04 +00:00

check_python.py

Fix I201 errors from flake8-import-order

2016-11-23 18:31:04 +00:00

common_startup.sh

Slight clarification of run.sh messaging when using conda.

2016-11-16 16:16:33 -05:00

create_db.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

db_shell.py

Change remaining __all__ from list to tuple

2016-10-18 19:24:31 +01:00

drmaa_external_killer.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

drmaa_external_runner.py

Fix I201 errors from flake8-import-order

2016-11-23 18:31:04 +00:00

edam_mapping.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

external_chown_script.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

extract_dataset_part.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

extract_toolbox_sections.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

fetch_eggs.py

Python3: scripts/cleanup_datasets scripts/data_libraries

2016-06-25 21:49:25 -04:00

functional_tests.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

galaxy-main

Fix a bunch of errors reported by Sphinx

2016-10-24 19:42:19 +01:00

get_platforms.py

Fix the remaining 1334 flake8 errors in scripts/ . Close #391.

2016-02-18 15:45:15 +00:00

grt.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

grt.yml.sample

grt.ini.sample is a YAML file, git it a YAML extension.

2016-07-21 14:31:25 -04:00

helper.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

manage_db.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

manage_tools.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

nosetests.py

Fix unit tests exit status

2016-07-29 19:47:08 +01:00

paster.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

patch.sh

Add the script I used to create security patches

2016-02-24 16:54:30 -05:00

rst2html.py

…

run_selenium_tests.sh

…

runtime_stats.py

Fix more E203 flake8 errors

2016-05-17 23:53:16 +01:00

set_dataset_sizes.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

set_user_disk_usage.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

summarize_timings.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

sync_reports_config.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

transfer.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

update_shed_config_path.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

validate_tools.sh

Refactor most of tool validation for CI into a standalone script.

2016-09-16 15:07:42 -04:00