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Matthias Bernt
a60a231b28
I guess test data is referred by the file name. This leads to a clash with the dbkeys.
32 lines
1.4 KiB
XML
32 lines
1.4 KiB
XML
<tool id="validation_dataset_metadata_in_file" name="validation_dataset_metadata_in_file" profile="21.09" version="0.1">
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<command><![CDATA[
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echo 'Hello World' > out1
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]]></command>
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<inputs>
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<!-- test dataset_metadata_in_file validator with and without negation
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the test also uses the data table fasta_indexes.loc, but it could be any file in the tool data dir -->
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<param name="value" type="data" format="data">
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<validator type="dataset_metadata_in_file" filename="fasta_indexes.loc" metadata_name="dbkey" metadata_column="1"/>
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</param>
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<param name="value_neg" type="data" format="data">
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<validator type="dataset_metadata_in_file" filename="fasta_indexes.loc" line_startswith="h" metadata_name="dbkey" metadata_column="1" negate="true"/>
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</param>
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</inputs>
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<outputs>
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<data name="out_file1" format="txt" from_work_dir="out1"/>
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</outputs>
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<tests>
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<!-- hg19 is in the file and hg38 isn't -->
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<test expect_failure="false">
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<param name="value" value="1.fasta" dbkey="hg19"/>
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<param name="value_neg" value="2.fasta" dbkey="hg38"/>
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</test>
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<test expect_failure="true">
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<param name="value" value="1.fasta" dbkey="hg38"/>
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<param name="value_neg" value="2.fasta" dbkey="hg19"/>
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</test>
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</tests>
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<help>
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</help>
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</tool>
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