John Chilton b09f48978e Merge pull request #7830 from erasche/grt-tiny-fix ...

grt small bugfix for ancient data, deprecated params table

2019-04-26 10:56:21 -04:00

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api

Use `yaml.safe_load() instead of load()`

2019-04-23 16:50:55 +01:00

auth

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cleanup_datasets

Lint

2018-10-15 16:07:14 -04:00

communication

Refactor galaxy.web.security into galaxy.security.idencoding.

2019-03-19 14:28:31 -04:00

grt

swap to exception

2019-04-26 13:29:12 +02:00

loc_files

Replace deprecated xml.etree.ElementTree.Element.getiterator() with iter()

2018-09-18 10:06:13 +01:00

metagenomics

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microbes

Change all remaining old-style classes to new style

2018-09-17 12:26:07 +01:00

migrate_tools

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slideshow

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taxonomy

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tool_shed

Refactor galaxy.web.security into galaxy.security.idencoding.

2019-03-19 14:28:31 -04:00

tools

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__init__.py

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apply_tags.py

Change all remaining old-style classes to new style

2018-09-17 12:26:07 +01:00

bootstrap_history.py

Merge remote-tracking branch 'upstream/release_19.01' into dev

2019-03-22 10:49:37 -04:00

build_toolbox.py

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build_universe_config.py

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check_eggs.py

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check_galaxy.py

Change all remaining old-style classes to new style

2018-09-17 12:26:07 +01:00

check_python.py

Drop support for Python 3.4. Officially support Python >=3.5

2019-01-31 23:31:44 +00:00

common_startup_functions.sh

Fix activation of `_galaxy_` conda env

2018-12-14 00:22:12 +00:00

common_startup.sh

Fix comments

2019-04-14 18:02:42 +01:00

config_sample_to_kwalify.py

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create_db.py

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db_shell.py

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docker_swarm_manager.py

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drmaa_external_killer.py

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drmaa_external_runner.py

external_runner: load json template first

2018-11-09 17:48:36 +01:00

dump_library_paths.py

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dump_tour.py

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edam_mapping.py

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external_chown_script.py

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extract_dataset_part.py

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extract_toolbox_sections.py

Fix deprecated `getchildren()`

2019-04-23 12:51:13 +01:00

fetch_eggs.py

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functional_tests.py

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galaxy-main

Make processes and mules report heartbeat in database

2019-03-29 21:46:18 +01:00

get_platforms.py

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get_uwsgi_args.py

Drop static-safe navigation to plugin dirs. These are no longer symlinks, they are staged files.

2019-03-14 13:23:45 -04:00

helper.py

Refactor galaxy.web.security into galaxy.security.idencoding.

2019-03-19 14:28:31 -04:00

maintenance.sh

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manage_db.py

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manage_tool_dependencies.py

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nosetests.py

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pages_identifier_conversion.py

Refactor galaxy.web.security into galaxy.security.idencoding.

2019-03-19 14:28:31 -04:00

paster.py

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patch.sh

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plugin_staging.py

Update plugin_staging to actually stage instead of symlink, since it no longer needs to be quite as fast (on startup). This will allow us to drop unnecessary trust rules from uwsgi static.

2019-03-14 13:18:43 -04:00

rst2html.py

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runtime_stats.py

Fix errors reported by flake8 3.6.0

2018-10-24 23:22:19 +01:00

secret_decoder_ring.py

Refactor galaxy.web.security into galaxy.security.idencoding.

2019-03-19 14:28:31 -04:00

set_dataset_sizes.py

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set_user_disk_usage.py

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summarize_timings.py

Fix errors reported by flake8 3.6.0

2018-10-24 23:22:19 +01:00

sync_reports_config.py

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transfer.py

Fix errors reported by flake8 3.6.0

2018-10-24 23:22:19 +01:00

update_shed_config_path.py

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validate_tools.sh

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