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https://github.com/galaxyproject/galaxy.git
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bec3d3ad9c
Drop Python 3.8 support in 5 Pulsar-compatible packages (job_metrics, tool_util, tool_util_models, util, objectstore) and run pyupgrade --py310-plus on their source code. - Bump requires-python from >=3.8 to >=3.10 in all 5 packages - Remove Python 3.8 and 3.9 classifiers - Remove ruff per-file-ignores for UP rules on these paths - Remove backports.zoneinfo conditional dependency - Remove pydyf<0.11 pin from conditional-requirements.txt - Update Makefile pyupgrade target (remove PY38_PYUPGRADE_PATHS) - Update CI workflow to test with Python 3.10 instead of 3.8 Clean up unused deprecated typing imports after pyupgrade Remove now-unused typing imports (Dict, List, Optional, Set, Tuple, Type, Union) that became dead after pyupgrade --py310-plus converted annotations to use built-in types and | syntax. Also run ruff check --fix --select=UP007,UP045 across the entire codebase to convert remaining Optional[X] -> X | None and Union[X, Y] -> X | Y patterns. Enable ruff UP007/UP045 for Python 3.10 union syntax Remove UP007 (Union[X,Y] -> X | Y) and UP045 (Optional[X] -> X | None) from the ruff ignore list and convert all type aliases across the codebase. These rules were deferred while Python 3.9 was supported; requires-python is now >=3.10. A custom script was used because neither ruff --fix nor pyupgrade --py310-plus converts Optional[X]/Union[X,Y] in type alias positions (e.g. X = Union[A, B]) — they only handle annotation positions (e.g. def f(x: Optional[int])). All 167 violations were module-level type aliases. A few edge cases were fixed manually: single-element Union[X,], typing.Union qualified refs, runtime Optional[type] calls, and Annotated[Optional[...]] pydantic fields. Fix UP007 autofix regression with string forward reference type aliases Commit fa6bd955a0 enabled ruff UP007/UP045 and auto-fixed module-level type aliases using Union with string forward references, producing invalid 'str | str' expressions. This was a known ruff bug (charliermarsh/ruff#826) that has since been fixed in later ruff versions, but this codebase was converted before the fix was in place. Revert to Union syntax and restore TYPE_CHECKING imports that ruff's TCH rule cleaned up as a side effect when it thought the forward references were unused.
46 lines
1.2 KiB
Python
46 lines
1.2 KiB
Python
import configparser
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import os
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from dataclasses import dataclass
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@dataclass
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class MyPyEntry:
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section_name: str
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package_name: str
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target: str
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def main():
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config = configparser.ConfigParser()
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config.read("./mypy.ini")
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for section in config.sections():
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if not section.startswith("mypy-"):
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continue
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section_name = section
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package_name = section[len("mypy-") :]
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if not (package_name.startswith("galaxy.") or package_name.startswith("tool_shed")):
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continue
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if "*" in package_name:
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# Do not handle wild cards yet.
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continue
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entry = MyPyEntry(section_name, package_name, to_python_path(package_name))
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if entry.target is None:
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print(f"Warning section {entry.section_name} does not refer to existant files")
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def to_python_path(package_name: str) -> str | None:
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path = os.path.join("lib", package_name.replace(".", "/"))
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if os.path.exists(path + ".py"):
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path = f"{path}.py"
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else:
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index_path = os.path.join(path, "__init__.py")
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if os.path.exists(index_path):
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path = index_path
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else:
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path = None
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return path
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if __name__ == "__main__":
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main()
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