mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Nicola Soranzo
30f60493c3
with manual fixes to 3 files to make them compatible with black 22.12.0 . We need to keep black pinned at `<23` until we vendorise `packaging`, since the new version of black depends on `packaging >=22.0` which is the version where `LegacyVersion` (which we use for tool lineages) was removed.
54 lines
2.0 KiB
Python
54 lines
2.0 KiB
Python
"""Integration tests for workflow syncing."""
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import json
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import os
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import yaml
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from galaxy_test.base.populators import (
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DatasetPopulator,
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WorkflowPopulator,
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)
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from galaxy_test.base.workflow_fixtures import WORKFLOW_SIMPLE_CAT_TWICE
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from galaxy_test.driver import integration_util
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class TestWorkflowSync(integration_util.IntegrationTestCase):
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framework_tool_and_types = True
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require_admin_user = True
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def setUp(self):
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super().setUp()
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self.dataset_populator = DatasetPopulator(self.galaxy_interactor)
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self.workflow_populator = WorkflowPopulator(self.galaxy_interactor)
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@classmethod
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def handle_galaxy_config_kwds(cls, config):
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super().handle_galaxy_config_kwds(config)
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cls.workflow_directory = cls._test_driver.mkdtemp()
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def test_sync_format2(self):
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workflow_path = self._write_workflow_content("workflow.yml", WORKFLOW_SIMPLE_CAT_TWICE)
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workflow_id = self.workflow_populator.import_workflow_from_path(workflow_path)
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with self.workflow_populator.export_for_update(workflow_id) as workflow_object:
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workflow_object["annotation"] = "new annotation"
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with open(workflow_path) as f:
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data = yaml.safe_load(f)
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assert data["doc"] == "new annotation"
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def test_sync_ga(self):
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workflow_json = self.workflow_populator.load_workflow("synctest")
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workflow_path = self._write_workflow_content("workflow.ga", json.dumps(workflow_json))
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workflow_id = self.workflow_populator.import_workflow_from_path(workflow_path)
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with self.workflow_populator.export_for_update(workflow_id) as workflow_object:
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workflow_object["annotation"] = "new annotation"
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with open(workflow_path) as f:
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data = json.load(f)
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assert data["annotation"] == "new annotation"
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def _write_workflow_content(self, filename, content):
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workflow_path = os.path.join(self.workflow_directory, filename)
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with open(workflow_path, "w") as f:
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f.write(content)
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return workflow_path
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