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41 lines
1.3 KiB
Python
41 lines
1.3 KiB
Python
#build list of available data
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import os, sys
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#available_regions[build][uids]
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available_regions = {}
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loc_file = "/depot/data2/galaxy/regions.loc"
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try:
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for line in open( loc_file ):
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if line[0:1] == "#" : continue
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fields = line.split('\t')
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#read each line, if not enough fields, go to next line
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try:
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build = fields[0]
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uid = fields[1]
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description = fields[2]
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filepath =fields[3].replace("\n","").replace("\r","")
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if build not in available_regions:
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available_regions[build]=[]
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available_regions[build].append((description,uid,False))
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except:
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continue
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except Exception, exc:
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print >>sys.stdout, 'random_intervals_code.py initialization error -> %s' % exc
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#return available datasets for group and build, set None option as selected for hg16
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def get_available_data( build ):
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available_sets = []
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if build in available_regions:
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return available_regions[build]
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else:
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return [('No data available for this build','None',True)]
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#def exec_before_job(app, inp_data, out_data, param_dict, tool):
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# for name, data in out_data.items():
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# data.name = data.name + " [" + maf_sets[param_dict['mafType']]['description'] + "]"
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