John Chilton 7b294fcaaa Implement tool upgrade assistant script. ...

Inspect a tool's XML file and provide advice on upgrading to new tool versions. It is implemented as a library in tool_util for integration with Planemo in the future but I've added a script here to run it on the command-line directly. It can also output in JSON for integration with external tools such as the galaxy language server.

2024-08-24 11:22:43 -04:00

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tool-data

do not add hg38 to test data table

2022-01-11 15:54:42 +01:00

tools

Implement tool upgrade assistant script.

2024-08-24 11:22:43 -04:00

webhooks

Add very basic tutorial mode test case

2023-05-01 21:23:01 -04:00

__init__.py

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conftest.py

Make celery fixture available in framework tests

2024-04-18 15:33:29 +02:00

known_broken_tools.txt

Exclude bed_to_bigbed and wig_to_bigwig from tests

2018-09-05 15:25:33 +02:00

test_data_managers.py

Drop nose

2022-11-01 18:45:07 +00:00

test_toolbox_pytest.py

Make framework tool tests use driver fixture

2024-01-01 15:05:19 +02:00

test_toolbox.py

Enable flake8-comprehensions ruff rules

2024-03-09 19:11:20 +00:00