John Chilton 3a9596a66f Cleanup galaxy_test.base.api_util. ...

- Rename get_master_api_key to get_admin_api_key - less offesnive and more accurate since it doesn't need to be the bootstrap key.
- Add types and cleanup docstrings.

2021-01-16 20:11:39 -05:00

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api

Fix remaining issues reported by bugbear; add it to flake8 reqs

2021-01-16 05:58:15 +00:00

auth

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

cleanup_datasets

Update scripts/cleanup_datasets/pgcleanup.py

2020-12-01 15:32:06 +01:00

grt

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

interactivetools

Fix remaining issues reported by bugbear; add it to flake8 reqs

2021-01-16 05:58:15 +00:00

loc_files

Fix remaining issues reported by bugbear; add it to flake8 reqs

2021-01-16 05:58:15 +00:00

metagenomics

Fix remaining issues reported by bugbear; add it to flake8 reqs

2021-01-16 05:58:15 +00:00

microbes

Fix remaining issues reported by bugbear; add it to flake8 reqs

2021-01-16 05:58:15 +00:00

objectstore

Fix remaining issues reported by bugbear; add it to flake8 reqs

2021-01-16 05:58:15 +00:00

slideshow

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

taxonomy

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tool_shed

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

tools

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

__init__.py

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apply_tags.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

bootstrap_history.py

Mark pre-annoucnement page as orphan.

2021-01-12 09:29:55 -05:00

build_toolbox.py

Fix remaining issues reported by bugbear; add it to flake8 reqs

2021-01-16 05:58:15 +00:00

check_eggs.py

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check_model.py

Let get_config() handle env override

2020-10-04 23:25:23 -04:00

check_python.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

common_startup_functions.sh

Hide "python: not found" error when Python 2 is not installed

2020-04-27 02:32:06 +01:00

common_startup.sh

Create Python3 virtualenv by default

2020-02-26 10:53:43 +01:00

config_sample_to_kwalify.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

create_db.py

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db_shell.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

docker_swarm_manager.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

drmaa_external_killer.py

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drmaa_external_runner.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

dump_library_paths.py

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edam_mapping.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

external_chown_script.py

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extract_dataset_part.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

extract_toolbox_sections.py

Fix remaining issues reported by bugbear; add it to flake8 reqs

2021-01-16 05:58:15 +00:00

fapi.py

Build FastAPI app in a single location

2021-01-07 16:26:06 +01:00

fetch_eggs.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

functional_tests.py

Cleanup galaxy_test.base.api_util.

2021-01-16 20:11:39 -05:00

galaxy

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galaxy_main.py

uvicorn-compatible factory function for fastapi.

2021-01-13 11:34:19 -05:00

galaxy_schemadisp.py

Lint fixes, prompt for sqlalchemy_schemadisplay install

2021-01-12 08:23:10 -05:00

galaxy-main

Adjust galaxy-main script so we can import from it for easy app setup

2020-12-22 11:18:00 +01:00

get_platforms.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

get_uwsgi_args.py

Set uwsgi's honor-stdin when in debug mode

2020-10-28 14:08:25 -04:00

helper.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

maintenance.sh

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manage_db.py

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manage_tool_dependencies.py

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nosetests.py

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pages_identifier_conversion.py

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paster.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

patch.sh

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plugin_staging.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

release-diff.py

Upgrade syntax using pyupgrade --py36-plus

2020-11-18 16:16:46 +00:00

rst2html.py

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runtime_stats.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

secret_decoder_ring.py

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set_dataset_sizes.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

set_user_disk_usage.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

summarize_timings.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

update_shed_config_path.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

validate_tools.sh

Switch to lxml for xml parsing

2020-05-12 15:00:27 +02:00