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44 lines
2.2 KiB
Plaintext
44 lines
2.2 KiB
Plaintext
#This is a sample file distributed with Galaxy that enables tools
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#to use alignment data stored as axt files. You will need to index
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#them and then create an alignseq.loc file similar to this one (store
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#it in this directory ) that points to the directories in which those
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#alignments are stored. The alignseq.loc file has this format ( white
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#space characters are TAB characters:
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#
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#align <build1> <build2> <dir>
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#
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#So if you had hg18/mm8 alignments in /align/hg18/mm8, the alignseq.loc
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#entry would look like this:
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#
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#align hg18 musMus8 /align/hg18/mm8
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#
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#Your file should include an entry per line for each alignment file
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#you have stored.
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#
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#align anoGam1 dm1 /depot/data2/galaxy/anoGam1/align/dm1
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#align anoGam1 dm2 /depot/data2/galaxy/anoGam1/align/dm2
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#align canFam1 hg17 /depot/data2/galaxy/canFam1/align/hg17
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#align canFam1 musMus6 /depot/data2/galaxy/canFam1/align/mm6
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#align canFam2 canFam2 /depot/data2/galaxy/canFam2/align/canFam2
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#align canFam2 hg17 /depot/data2/galaxy/canFam2/align/hg17
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#align canFam2 hg18 /depot/data2/galaxy/canFam2/align/hg18
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#align canFam2 musMus6 /depot/data2/galaxy/canFam2/align/mm6
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#align canFam2 musMus7 /depot/data2/galaxy/canFam2/align/mm7
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#align canFam2 musMus8 /depot/data2/galaxy/canFam2/align/mm8
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#align canFam2 ratNor3 /depot/data2/galaxy/canFam2/align/rn3
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#align canFam2 ratNor4 /depot/data2/galaxy/canFam2/align/rn4
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#align danRer2 fr1 /depot/data2/galaxy/danRer2/align/fr1
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#align danRer2 hg17 /depot/data2/galaxy/danRer2/align/hg17
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#align danRer2 musMus6 /depot/data2/galaxy/danRer2/align/mm6
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#align danRer2 tetNig1 /depot/data2/galaxy/danRer2/align/tetNig1
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#align danRer3 fr1 /depot/data2/galaxy/danRer3/align/fr1
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#align danRer3 hg18 /depot/data2/galaxy/danRer3/align/hg18
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#align danRer3 musMus7 /depot/data2/galaxy/danRer3/align/mm7
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#align danRer3 musMus8 /depot/data2/galaxy/danRer3/align/mm8
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#align danRer3 tetNig1 /depot/data2/galaxy/danRer3/align/tetNig1
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#align danRer4 fr1 /depot/data2/galaxy/danRer4/align/fr1
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#align danRer4 hg18 /depot/data2/galaxy/danRer4/align/hg18
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#align danRer4 musMus8 /depot/data2/galaxy/danRer4/align/mm8
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#align danRer4 ratNor4 /depot/data2/galaxy/danRer4/align/rn4
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#align danRer4 tetNig1 /depot/data2/galaxy/danRer4/align/tetNig1
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