Daniel Blankenberg 06ca4ce6a3 Update tests for samtools rmdup.

2011-09-01 09:38:16 -04:00

..

bam_to_sam.py

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

bam_to_sam.xml

Updated sam-to-bam to properly assign output dbkey; enhanced sam-to-bam and bam-to-sam functional tests

2011-05-09 12:00:05 -04:00

pileup_interval.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

pileup_interval.xml

Requirements tags for some samtools tools

2010-09-26 18:06:01 -04:00

pileup_parser.pl

Fixed indel calling in pileup wrapper. TO DO: Write a separate wrapper for indels only.

2010-04-14 13:52:35 -04:00

pileup_parser.xml

Adjust image links in tools to work with a proxy prefix [Brad Chapman]. Fixes #141

2010-12-14 14:22:13 -05:00

sam2interval.py

sam2interval: Add read_name column

2011-08-24 16:43:02 -04:00

sam2interval.xml

Fix to sam2interval bug reported by Kathy So. The bug was causing sam2interval to successfully parse unmapped sam entries, which have no valid coordinate.

2011-06-10 14:42:41 -04:00

sam_bitwise_flag_filter.py

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

sam_bitwise_flag_filter.xml

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

sam_merge_code.py

Remove imports of the sets module, set has been a standard type since 2.4. There are more in tools, but they check for the existence of set() first, so will not raise a warning.

2010-09-27 21:35:03 -04:00

sam_merge.py

Added version info to stdout for NGS tools

2010-11-24 12:35:49 -05:00

sam_merge.xml

Increase lines_diff so sam_merge tests might pass on buildbot

2011-08-04 16:55:13 +10:00

sam_pileup.py

Added version info to stdout for NGS tools

2010-11-24 12:35:49 -05:00

sam_pileup.xml

Corrected output labels to be in line with other tools for NGS tools: sam_to_bam, sam_merge, sam_pileup, bam_to_sam, PerM, bowtie_color_wrapper, bowtie_wrapper, bwa_wrapper, lastz_paired_reads_wrapper, lastz_wrapper, srma_wrapper

2011-01-12 13:31:04 -05:00

sam_to_bam.py

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

sam_to_bam.xml

Updated sam-to-bam to properly assign output dbkey; enhanced sam-to-bam and bam-to-sam functional tests

2011-05-09 12:00:05 -04:00

samtools_flagstat.xml

Add samtools rmdup tool.

2011-08-31 16:50:58 -04:00

samtools_rmdup.xml

Update tests for samtools rmdup.

2011-09-01 09:38:16 -04:00