Nicola Soranzo 388b4a56b6 Merge branch 'release_25.0' into release_25.1

2025-11-25 19:40:13 +00:00

..

biotools

Move things around

2022-11-16 17:01:28 +01:00

data

Replace deprecated `__package__ with __name__

2024-12-16 15:16:41 +00:00

mulled

Merge branch 'release_24.2' into release_25.0

2025-11-25 17:29:43 +00:00

tool_directories/r-tool-dir

Systematic handling of remotely required tool files.

2021-08-10 14:04:32 -04:00

toolbox

Format code with black 25.1.0

2025-02-16 18:07:51 +00:00

upgrade

Integrate tool test validation into upgrade advisor.

2024-08-24 16:12:32 -04:00

verify

extend test

2025-10-16 14:52:56 +02:00

__init__.py

…

framework_tool_checks.yml

Tool Request models.

2024-09-30 13:25:02 -04:00

invalid_citation_24.2.xml

Fix #19515 - invalid citation handling changed with 24.2.

2025-03-20 10:39:31 -04:00

invalid_citation.xml

Fix #19515 - invalid citation handling changed with 24.2.

2025-03-20 10:39:31 -04:00

parameter_specification.yml

Fix various parameter validation issues.

2025-04-02 12:49:09 -04:00

test_assertion_models.py

Code cleanups from pyupgrade

2025-07-31 11:17:22 +01:00

test_conda_resolution.py

Restore resolution of Conda environments generated from non-lowercase package names

2023-07-27 13:23:32 +01:00

test_container_description.py

container description: make identifier non-optional

2023-06-14 15:28:37 +01:00

test_container_resolution.py

tests: add integration and fix unit tests

2023-06-14 15:28:36 +01:00

test_cwl_util.py

Move unit tests to more appropriate packages.

2020-07-14 09:24:42 -04:00

test_cwl.py

Refactor requirement parsing in multiple files to streamline credential handling

2025-10-07 16:06:04 +02:00

test_docker_volumes.py

Drop containers package, move to tool_util

2022-03-24 19:51:59 +01:00

test_edam_util.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_input_models.py

Fix unit test import

2025-05-12 12:29:43 +02:00

test_loader_directory.py

Test improvements

2023-01-30 10:38:29 +01:00

test_ontologies.py

Settle on type instead of reftyp inside xref

2025-05-05 19:07:27 +02:00

test_output_checker.py

fix test exit code default

2024-03-01 22:45:39 -05:00

test_output_models.py

New packages galaxy-tool-util-models, galaxy-tool-shed-schema.

2025-04-16 12:47:37 +02:00

test_parameter_convert.py

Fix unit test names.

2025-08-18 11:08:05 -04:00

test_parameter_cwl_runtime_model.py

Add runtime model to API

2025-05-12 10:54:30 +02:00

test_parameter_specification.py

Code cleanups from pyupgrade

2025-07-31 11:17:22 +01:00

test_parameter_test_cases.py

Code cleanups from pyupgrade

2025-07-31 11:17:22 +01:00

test_parameter_validator_models.py

Pydantic models for parameter validators.

2024-10-22 07:49:37 -04:00

test_parsing.py

Refactor requirement parsing in multiple files to streamline credential handling

2025-10-07 16:06:04 +02:00

test_required_files.py

Replace `unittest.TestCase` with pytest-based partial re-implementation

2022-09-27 03:34:58 +01:00

test_resolution_cache.py

Merge branch 'release_22.01' into release_22.05

2022-08-30 20:32:39 +02:00

test_singularity_util.py

fix tests for singularity

2025-05-09 09:27:53 +02:00

test_test_definition_parsing.py

[WIP] Implement records - heterogenous dataset collections.

2025-05-09 16:38:19 -04:00

test_test_format_model.py

New packages galaxy-tool-util-models, galaxy-tool-shed-schema.

2025-04-16 12:47:37 +02:00

test_test_parsing.py

use asserts also in test

2024-03-09 15:10:52 +01:00

test_tool_deps.py

Fix linting + remove debug statement

2025-09-05 13:08:52 +02:00

test_tool_linters.py

fix datatypes linter

2025-08-04 10:02:00 +02:00

test_tool_loader.py

Merge branch 'release_22.01' into dev

2022-02-21 17:00:55 +00:00

test_toolbox_view_parsing.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_toolbox_view_sources.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_util.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_verify_function.py

Initial unit test for copying test data.

2022-09-23 09:11:40 -04:00

test_verify_hid.py

Initial unit test for copying test data.

2022-09-23 09:11:40 -04:00

test_verify_script.py

Remove use of mktemp

2023-06-12 09:48:38 -04:00

test_verify.py

Add pin_labels attribute for image_diff comparison method

2024-03-29 12:01:34 +01:00

test_version.py

Vendorise `packaging.versions.LegacyVersion`

2023-05-07 17:30:59 +01:00

test_wait.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

util.py

Tool Request models.

2024-09-30 13:25:02 -04:00