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80 lines
3.8 KiB
XML
80 lines
3.8 KiB
XML
<!-- test how dynamic selects are used in the command section -->
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<tool id="select_dynamic" name="Dynamic select" version="1.0.0" profile="22.05">
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<command><![CDATA[
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echo "select $select" >> '$output1' &&
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echo "select path $select.fields.path" >> '$output1' &&
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## direct access to the select parameter gives a comma sepated list of the `value`s
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echo "select_mult $select_mult" >> '$output1'
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## looping over the select parameter gives the `value`s
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#for i, o in enumerate($select_mult)
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&& echo "select_mult $i $o" >> '$output1'
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#end for
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## acessing fields gives comma separated properties
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## and in case nothing is selected empty string
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&& echo "select_mult real_value $select_mult.fields.real_value" >> '$output1'
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&& echo "select_mult dbkey $select_mult.fields.dbkey" >> '$output1'
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&& echo "select_mult name $select_mult.fields.name" >> '$output1'
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&& echo "select_mult path $select_mult.fields.path" >> '$output1'
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&& echo "select_mult value $select_mult.fields.value" >> '$output1'
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]]></command>
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<inputs>
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<param name="select" type="select" optional="true">
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<options from_data_table="test_fasta_indexes">
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</options>
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</param>
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<param name="select_mult" type="select" optional="true" multiple="true">
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<options from_data_table="test_fasta_indexes">
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<!-- all columns that should be accessible via the fields attribute need to be included
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since the for loop should iterate over the paths column 3 is names value here
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and the actual value column (0) is "renamed" to real_value -->
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<column name="real_value" index="0"/>
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<column name="dbkey" index="1"/>
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<column name="name" index="2"/>
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<column name="value" index="3"/>
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<!-- same column can be accessible via multiple names-->
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<column name="path" index="3"/>
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</options>
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</param>
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</inputs>
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<outputs>
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<data name="output1" format="tabular" />
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</outputs>
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<tests>
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<test>
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<param name="select" value="hg19_name"/>
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<param name="select_mult" value="hg19_name,hg18_name"/>
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<output name="output1">
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<assert_contents>
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<has_line line="select hg19_value" />
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<has_line line="select path hg19_path" />
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<has_line line="select_mult hg19_path,hg18_path" />
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<has_line line="select_mult 0 hg19_path" />
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<has_line line="select_mult 1 hg18_path" />
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<has_line line="select_mult real_value hg19_value,hg18_value" />
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<has_line line="select_mult dbkey hg19,hg18" />
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<has_line line="select_mult name hg19_name,hg18_name" />
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<has_line line="select_mult path hg19_path,hg18_path" />
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<has_line line="select_mult value hg19_path,hg18_path" />
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<has_n_lines n="10"/>
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</assert_contents>
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</output>
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</test>
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<test>
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<output name="output1">
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<assert_contents>
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<has_line line="select None" />
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<has_line line="select path " />
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<has_line line="select_mult None" />
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<has_line line="select_mult real_value " />
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<has_line line="select_mult dbkey " />
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<has_line line="select_mult name " />
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<has_line line="select_mult path " />
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<has_line line="select_mult value " />
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<has_n_lines n="8" />
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</assert_contents>
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</output>
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</test>
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</tests>
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</tool>
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