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galaxy/test/functional/tools/output_format_input.xml
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John Chilton 7b294fcaaa Implement tool upgrade assistant script.
Inspect a tool's XML file and provide advice on upgrading to new tool versions. It is implemented as a library in tool_util for integration with Planemo in the future but I've added a script here to run it on the command-line directly. It can also output in JSON for integration with external tools such as the galaxy language server.
2024-08-24 11:22:43 -04:00

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XML

<tool id="output_format_input" name="output_format_input" version="1.0" profile="21.01">
<!-- test format="input" for the profile version where the format is set to "input"
(for legacy tools, i.e. profile <16.04, the format of a random input is used) -->
<description></description>
<command>
cat '$input' > '$output'
</command>
<inputs>
<param format="tabular" name="input" type="data" label="Select cells from"/>
</inputs>
<outputs>
<data format="input" name="output" metadata_source="input" />
</outputs>
<tests>
<test>
<param name="input" value="simple_line.txt" ftype="txt" />
<output name="output" file="simple_line.txt" ftype="input"/>
</test>
<test>
<param name="input" value="simple_line.txt" ftype="tabular" />
<output name="output" file="simple_line.txt" ftype="input"/>
</test>
</tests>
<help>
</help>
</tool>