mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-10-13 00:44:55 +08:00
Nicola Soranzo
7f89e0eab9
Found by running: ``` make pyupgrade ruff check --fix . ruff check --preview --unsafe-fixes --select=F401 --fix . make format make update-client-api-schema ``` The bulk of the changes are replacements of typing deprecated aliases such as `Dict` and `List` with the standard library classes. These aliases became redundant in Python 3.9 when the corresponding pre-existing classes were enhanced to support `[]`, see https://docs.python.org/3/library/typing.html#deprecated-aliases Also: - Update the `pyupgrade` Makefile target to use `--py38-plus` for the packages needed by Pulsar, including the new galaxy-tool-util-models package.
64 lines
1.8 KiB
Python
64 lines
1.8 KiB
Python
import os
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from typing import (
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NamedTuple,
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)
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import pytest
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from galaxy_test.api._framework import ApiTestCase
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from galaxy_test.driver.driver_util import GalaxyTestDriver
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SKIPTEST = os.path.join(os.path.dirname(__file__), "known_broken_tools.txt")
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class ToolTest(NamedTuple):
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tool_id: str
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tool_version: str
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test_index: int
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def get_skiplist():
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with open(SKIPTEST) as skiptest:
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skiplist = [line.strip() for line in skiptest if line.strip() and not line.startswith("#")]
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return skiplist
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def get_cases() -> list[ToolTest]:
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atc = ApiTestCase()
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atc._test_driver = GalaxyTestDriver()
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atc._test_driver.setup()
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atc.setUp()
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test_summary = atc.galaxy_interactor.get_tests_summary()
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test_cases = []
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for tool_id, summary_dict in test_summary.items():
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for tool_version, tool_dict in summary_dict.items():
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for index in range(tool_dict["count"]):
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test_cases.append(ToolTest(tool_id, tool_version, index))
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atc._test_driver.stop_servers()
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return test_cases
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def cases():
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skiplist = get_skiplist()
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for tool_test in get_cases():
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marks = []
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marks.append(pytest.mark.skipif(tool_test.tool_id in skiplist, reason="tool in skiplist"))
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if "data_manager_" in tool_test.tool_id:
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marks.append(pytest.mark.data_manager(tool_test))
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else:
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marks.append(pytest.mark.tool(tool_test))
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yield pytest.param(tool_test, marks=marks)
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def idfn(val: ToolTest):
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return f"{val.tool_id}/{val.tool_version}-{val.test_index}"
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class TestFrameworkTools(ApiTestCase):
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conda_auto_init = True
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conda_auto_install = True
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@pytest.mark.parametrize("testcase", cases(), ids=idfn)
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def test_tool(self, testcase: ToolTest):
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self._test_driver.run_tool_test(testcase.tool_id, testcase.test_index, tool_version=testcase.tool_version)
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