mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
John Chilton
50d426ed2b
- Automatically generate RST docs from config schema. - Describe older functionality as well as new YAML-based configuration. - Replace https://wiki.galaxyproject.org/Admin/UsageReports.
157 lines
2.9 KiB
ReStructuredText
157 lines
2.9 KiB
ReStructuredText
~~~~~~~~~~~~~~~
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``filter-with``
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~~~~~~~~~~~~~~~
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:Description:
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If running behind a proxy server and Galaxy is served from a
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subdirectory, enable the proxy-prefix filter and set the prefix in
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the [filter:proxy-prefix] section above.
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:Default: proxy-prefix
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:Type: str
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~~~~~~~~~~~~~~~
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``cookie_path``
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~~~~~~~~~~~~~~~
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:Description:
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If proxy-prefix is enabled and you're running more than one Galaxy
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instance behind one hostname, you will want to set this to the
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same path as the prefix in the filter above. This value becomes
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the "path" attribute set in the cookie so the cookies from each
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instance will not clobber each other.
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:Default: None
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:Type: str
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~~~~~~~~~~~~~
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``log_level``
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~~~~~~~~~~~~~
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:Description:
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Verbosity of console log messages. Acceptable values can be found
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here: https://docs.python.org/2/library/logging.html#logging-
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levels
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:Default: DEBUG
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:Type: str
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~~~~~~~~~~~~~~~~~~~~~~~
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``database_connection``
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~~~~~~~~~~~~~~~~~~~~~~~
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:Description:
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Database connection Galaxy reports are intended for production
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Galaxy instances, so sqlite (and the default value below) is not
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supported. An SQLAlchemy connection string should be used specify
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an external database.
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:Default: sqlite:///./database/universe.sqlite?isolation_level=IMMEDIATE
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:Type: str
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~~~~~~~~~~~~~
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``file_path``
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~~~~~~~~~~~~~
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:Description:
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Where dataset files are saved Temporary storage for additional
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datasets, this should be shared through the cluster
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:Default: database/files
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:Type: str
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~~~~~~~~~~~~~~~~~
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``new_file_path``
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~~~~~~~~~~~~~~~~~
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:Description:
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Where dataset files are saved Temporary storage for additional
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datasets, this should be shared through the cluster
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:Default: database/tmp
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:Type: str
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~~~~~~~~~~~~~~~~~~~~~~~
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``template_cache_path``
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~~~~~~~~~~~~~~~~~~~~~~~
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:Description:
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Mako templates are compiled as needed and cached for reuse, this
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directory is used for the cache
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:Default: database/compiled_templates/reports
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:Type: str
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~~~~~~~~~
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``debug``
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~~~~~~~~~
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:Description:
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Configuration for debugging middleware
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:Default: False
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:Type: bool
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~~~~~~~~~~~~
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``use_lint``
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~~~~~~~~~~~~
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:Description:
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Check for WSGI compliance.
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:Default: False
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:Type: bool
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~~~~~~~~~~~~~~~~~~~
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``use_interactive``
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~~~~~~~~~~~~~~~~~~~
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:Description:
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NEVER enable this on a public site (even test or QA)
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:Default: True
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:Type: bool
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~~~~~~~~~~~~~~~~~
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``use_heartbeat``
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~~~~~~~~~~~~~~~~~
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:Description:
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Write thread status periodically to 'heartbeat.log' (careful, uses
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disk space rapidly!)
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:Default: True
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:Type: bool
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~~~~~~~~~~~~~~~
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``use_profile``
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~~~~~~~~~~~~~~~
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:Description:
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Profiling middleware (cProfile based)
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:Default: True
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:Type: bool
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~~~~~~~~~~~~~~~
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``smtp_server``
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~~~~~~~~~~~~~~~
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:Description:
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Mail
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:Default: yourserver@yourfacility.edu
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:Type: str
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~~~~~~~~~~~~~~~~~~
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``error_email_to``
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~~~~~~~~~~~~~~~~~~
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:Description:
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Mail
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:Default: your_bugs@bx.psu.edu
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:Type: str
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