John Chilton 2bcc9e202e Fix for watching tools on some more interesting file systems.

2015-02-23 19:58:12 -05:00

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actions

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dataset_collections

A simpler way to configure output pairs (exploiting static structure).

2015-01-15 09:30:00 -05:00

datatypes

Dataproviders, column: correct max split in filter parsing

2015-02-16 15:19:35 -05:00

eggs

Rename the egg env vars back to GALAXY_* now that they are not config file options anymore.

2015-02-12 15:42:50 -05:00

exceptions

Ensure unique step label and UUIDs across workflows during create/update.

2014-12-15 22:20:12 -05:00

external_services

First pass removing to_json_string/from_json_string.

2014-09-08 16:41:53 -04:00

forms

Fix a few instances of incorrect (deprecated) use of value instead of identity testing in xml parsing.

2015-02-08 11:16:14 -05:00

jobs

Rename the egg env vars back to GALAXY_* now that they are not config file options anymore.

2015-02-12 15:42:50 -05:00

managers

Merge.

2015-02-17 07:26:52 -05:00

model

Merged in erasche2/galaxy-central (pull request #570)

2015-02-17 09:46:09 -05:00

objectstore

Add reminder for why imports are done this way in s3objectstore for the next time I forget.

2015-02-10 15:06:12 -05:00

openid

First pass removing to_json_string/from_json_string.

2014-09-08 16:41:53 -04:00

quota

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sample_tracking

Fix a few instances of incorrect (deprecated) use of value instead of identity testing in xml parsing.

2015-02-08 11:16:14 -05:00

security

Some comments to clarify working santization.

2014-12-08 11:11:26 -05:00

tags

Initial commit of TagManager refactor.

2015-01-06 16:09:47 -05:00

tools

Fix for watching tools on some more interesting file systems.

2015-02-23 19:58:12 -05:00

util

Fix bug in usage of _replace in masking code.

2015-02-14 10:52:59 -05:00

visualization

Update original parse_xml function with Carl's fix. It's safe, and I know I saw that same doctype deprecation somewhere else, might as well share it.

2015-02-12 14:56:33 -05:00

web

Prevent last_action column from being populated with time.now() in the entire database and function correctly with null values here. Related bugfixes.

2015-02-09 14:49:35 -05:00

webapps

Merged in erasche2/galaxy-central (pull request #570)

2015-02-17 09:46:09 -05:00

work

Implement workflow scheduling 'plugin' framework.

2014-11-13 13:47:38 -05:00

workflow

Minor formatting, spelling in workflow scheduling_manager.

2015-02-08 11:21:42 -05:00

__init__.py

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app.py

More adjustments to queue kickoff to force webapps to initialize the connection prior to models; this (at least seems to, so far) fixes the concurrent mapper initialization race condition sqlalchemy issue.

2015-02-09 16:14:55 -05:00

config.py

Fix for watching tools on some more interesting file systems.

2015-02-23 19:58:12 -05:00

main.py

Fix path insertion vs appending of <galaxy>/lib for galaxy/main.py.

2015-02-12 10:36:10 -05:00

queue_worker.py

Change external display application reloading to use the internal queue and reflect appropriately to other processes.

2015-02-13 15:03:33 -05:00

queues.py

More adjustments to queue kickoff to force webapps to initialize the connection prior to models; this (at least seems to, so far) fixes the concurrent mapper initialization race condition sqlalchemy issue.

2015-02-09 16:14:55 -05:00

version.py

Change version format to YY.MM.

2015-02-10 10:04:19 -05:00