Nicola Soranzo 388b4a56b6 Merge branch 'release_25.0' into release_25.1

2025-11-25 19:40:13 +00:00

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biotools

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data

Replace deprecated `__package__ with __name__

2024-12-16 15:16:41 +00:00

mulled

Merge branch 'release_24.2' into release_25.0

2025-11-25 17:29:43 +00:00

tool_directories/r-tool-dir

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toolbox

Format code with black 25.1.0

2025-02-16 18:07:51 +00:00

upgrade

Integrate tool test validation into upgrade advisor.

2024-08-24 16:12:32 -04:00

verify

extend test

2025-10-16 14:52:56 +02:00

__init__.py

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framework_tool_checks.yml

Tool Request models.

2024-09-30 13:25:02 -04:00

invalid_citation_24.2.xml

Fix #19515 - invalid citation handling changed with 24.2.

2025-03-20 10:39:31 -04:00

invalid_citation.xml

Fix #19515 - invalid citation handling changed with 24.2.

2025-03-20 10:39:31 -04:00

parameter_specification.yml

Fix various parameter validation issues.

2025-04-02 12:49:09 -04:00

test_assertion_models.py

Code cleanups from pyupgrade

2025-07-31 11:17:22 +01:00

test_conda_resolution.py

Restore resolution of Conda environments generated from non-lowercase package names

2023-07-27 13:23:32 +01:00

test_container_description.py

container description: make identifier non-optional

2023-06-14 15:28:37 +01:00

test_container_resolution.py

tests: add integration and fix unit tests

2023-06-14 15:28:36 +01:00

test_cwl_util.py

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test_cwl.py

Refactor requirement parsing in multiple files to streamline credential handling

2025-10-07 16:06:04 +02:00

test_docker_volumes.py

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test_edam_util.py

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test_input_models.py

Fix unit test import

2025-05-12 12:29:43 +02:00

test_loader_directory.py

Test improvements

2023-01-30 10:38:29 +01:00

test_ontologies.py

Settle on type instead of reftyp inside xref

2025-05-05 19:07:27 +02:00

test_output_checker.py

fix test exit code default

2024-03-01 22:45:39 -05:00

test_output_models.py

New packages galaxy-tool-util-models, galaxy-tool-shed-schema.

2025-04-16 12:47:37 +02:00

test_parameter_convert.py

Fix unit test names.

2025-08-18 11:08:05 -04:00

test_parameter_cwl_runtime_model.py

Add runtime model to API

2025-05-12 10:54:30 +02:00

test_parameter_specification.py

Code cleanups from pyupgrade

2025-07-31 11:17:22 +01:00

test_parameter_test_cases.py

Code cleanups from pyupgrade

2025-07-31 11:17:22 +01:00

test_parameter_validator_models.py

Pydantic models for parameter validators.

2024-10-22 07:49:37 -04:00

test_parsing.py

Refactor requirement parsing in multiple files to streamline credential handling

2025-10-07 16:06:04 +02:00

test_required_files.py

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test_resolution_cache.py

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test_singularity_util.py

fix tests for singularity

2025-05-09 09:27:53 +02:00

test_test_definition_parsing.py

[WIP] Implement records - heterogenous dataset collections.

2025-05-09 16:38:19 -04:00

test_test_format_model.py

New packages galaxy-tool-util-models, galaxy-tool-shed-schema.

2025-04-16 12:47:37 +02:00

test_test_parsing.py

use asserts also in test

2024-03-09 15:10:52 +01:00

test_tool_deps.py

Fix linting + remove debug statement

2025-09-05 13:08:52 +02:00

test_tool_linters.py

fix datatypes linter

2025-08-04 10:02:00 +02:00

test_tool_loader.py

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test_toolbox_view_parsing.py

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test_toolbox_view_sources.py

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test_util.py

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test_verify_function.py

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test_verify_hid.py

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test_verify_script.py

Remove use of mktemp

2023-06-12 09:48:38 -04:00

test_verify.py

Add pin_labels attribute for image_diff comparison method

2024-03-29 12:01:34 +01:00

test_version.py

Vendorise `packaging.versions.LegacyVersion`

2023-05-07 17:30:59 +01:00

test_wait.py

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util.py

Tool Request models.

2024-09-30 13:25:02 -04:00