galaxy/static/scripts/mvc/tool/tool-form-composite.js

define(["utils/utils","mvc/ui/ui-misc","mvc/form/form-view","mvc/form/form-data","mvc/tool/tool-form-base"],function(a,b,c,d,e){var f=Backbone.View.extend({initialize:function(f){var g=this;this.workflow_id=f.id,this.forms=[],this.steps=[],this.links=[],this.setElement('<div class="ui-form-composite"/>'),this.$header=$("<div/>").addClass("ui-form-header"),this.$header.append(new b.Label({title:"Workflow: "+f.name}).$el),this.$header.append(new b.Button({title:"Collapse",icon:"fa-angle-double-up",onclick:function(){_.each(g.forms,function(a){a.portlet.collapse()})}}).$el),this.$header.append(new b.Button({title:"Expand all",icon:"fa-angle-double-down",onclick:function(){_.each(g.forms,function(a){a.portlet.expand()})}}).$el),this.$el.append(this.$header),_.each(f.steps,function(b,c){Galaxy.emit.debug("tool-form-composite::initialize()",c+" : Preparing workflow step."),b=a.merge({name:"Step "+(parseInt(c)+1)+": "+b.name,icon:"",help:null,description:b.annotation&&" - "+b.annotation||b.description,citations:null,needs_update:!0,collapsible:!0,collapsed:c>0,sustain_version:!0,sustain_repeats:!0,sustain_conditionals:!0,narrow:!0,text_enable:"Edit",text_disable:"Undo",cls_enable:"fa fa-edit",cls_disable:"fa fa-undo"},b),_.each(f.steps,function(a){var e={};_.each(b.output_connections,function(b){a.step_id===b.input_step_id&&(e[b.input_name]=b)}),d.matchIds(a.inputs,e,function(a,d){d.linked?d.help+=", ":(d.linked=b.step_type,d.type="hidden",d.help=""),d.help+="Output dataset '"+a.output_name+"' from step "+(parseInt(c)+1)})}),g.steps[c]=b,g.links[c]=[]}),_.each(g.steps,function(b,f){function h(b,c){void 0===c&&(c=!0),_.each(b,function(b){if(_.isObject(b)){if(b.type){var d=-1!==["data","data_collection"].indexOf(b.type),e=g._isWorkflowParameter(b.value);d&&b.linked&&!b.linked.startsWith("data")&&(c=!1),b.options&&(0==b.options.length&&!c||e)&&(b.is_workflow=!0),b.value&&"RuntimeValue"==b.value.__class__&&(b.value=null),d||"hidden"===b.type||e||(b.optional||!a.isEmpty(b.value)&&""!==b.value)&&(b.collapsible_value=b.value,b.collapsible_preview=!0)}h(b,c)}})}var i=null;String(b.step_type).startsWith("data")?i=new c(a.merge({title:"<b>"+b.name+"</b>",onchange:function(){var a=i.data.create().input;_.each(g.links[f],function(b){b.input.value(a),b.form.trigger("change")})}},b)):"tool"==b.step_type&&(h(b.inputs),d.matchContext(b.inputs,"data_ref",function(a,b){a.is_workflow=b.linked&&!b.linked.startsWith("data")||g._isWorkflowParameter(a.value)}),i=new e(b)),g.forms[f]=i}),_.each(this.steps,function(a,b){_.each(a.output_connections,function(a){_.each(g.forms,function(c){if(c.options.step_id===a.input_step_id){var d=c.field_list[c.data.match(a.input_name)];d&&g.links[b].push({input:d,form:c})}})})});var h={},i={},j=0,k=function(a,b,c){var d=a.$("input");0===d.length&&(d=a.$el),d.addClass(c).css({color:b,"border-color":b})};if(_.each(this.steps,function(a,b){_.each(a.inputs,function(a){var c=g._isWorkflowParameter(a.value);if(c){var d=g.forms[b].field_list[a.id],e=g.forms[b].element_list[a.id];h[c]=h[c]||[],h[c].push(d),d.value(c),e.disable(!0),i[c]=i[c]||{type:a.type,is_workflow:a.options,label:c,name:c,color:"hsl( "+100*++j+", 70%, 30% )"},k(d,i[c].color,"ui-form-wp-target")}})}),!_.isEmpty(i)){var l=new c({title:"<b>Workflow Parameters</b>",inputs:i,onchange:function(){_.each(l.data.create(),function(b,c){_.each(h[c],function(d){d.value(a.sanitize(b)||c)})})}});_.each(l.field_list,function(a,b){k(a,l.input_list[b].color,"ui-form-wp-source")}),this.$el.append("<p/>").addClass("ui-margin-top"),this.$el.append(l.$el)}_.each(this.steps,function(a,b){var c=g.forms[b];g.$el.append("<p/>").addClass("ui-margin-top").append(c.$el),a.post_job_actions&&a.post_job_actions.length&&c.portlet.append($("<div/>").addClass("ui-form-footer-info fa fa-bolt").append(_.reduce(a.post_job_actions,function(a,b){return a+" "+b.short_str},""))),Galaxy.emit.debug("tool-form-composite::initialize()",b+" : Workflow step state ready.",a)}),this.history_form=null,f.history_id||(this.history_form=new c({inputs:[{type:"conditional",test_param:{name:"new_history",label:"Send results to a new history",type:"boolean",value:"false",help:""},cases:[{value:"true",inputs:[{name:"new_history_name",label:"History name",type:"text",value:f.name}]}]}]}),this.$el.append("<p/>").addClass("ui-margin-top"),this.$el.append(this.history_form.$el)),this.$el.append("<p/>").addClass("ui-margin-top"),this.execute_btn=new b.Button({icon:"fa-check",title:"Run workflow",cls:"btn btn-primary",floating:"clear",onclick:function(){g._execute()}}),this.$el.append(this.execute_btn.$el),$("body").append(this.$el)},_execute:function(){var b=this,c={inputs:{},parameters:{}},d=!0;_.each(this.forms,function(a,e){var f=a.data.create(),g=b.steps[e],h=g.step_id,i=g.step_type,j=g.order_index;c.parameters[h]={},a.trigger("reset");for(var k in f){var l=f[k],m=a.data.match(k),n=(a.field_list[m],a.input_list[m]);String(i).startsWith("data")?l&&l.values&&l.values.length>0?c.inputs[j]=l.values[0]:d&&(a.highlight(m),d=!1):String(n.type).startsWith("data")||(n.optional||n.is_workflow||null!=l?c.parameters[h][k]=l:(a.highlight(m),d=!1))}}),console.log(JSON.stringify(c)),d?(b._enabled(!1),Galaxy.emit.debug("tools-form-composite::submit()","Validation complete.",c),a.request({type:"POST",url:Galaxy.root+"api/workflows/"+this.workflow_id+"/invocations",data:c,success:function(a){Galaxy.emit.debug("tool-form-composite::submit","Submission successful.",a),parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.refreshContents(),console.log(a)},error:function(a){if(console.log(a),a&&a.err_data){var b=form.data.matchResponse(a.err_data);for(var c in b){form.highlight(c,b[c]);break}}else Galaxy.modal&&Galaxy.modal.show({title:"Job submission failed",body:a&&a.err_msg||ToolTemplate.error(options.job_def),buttons:{Close:function(){Galaxy.modal.hide()}}})},complete:function(){b._enabled(!0)}})):b._enabled(!0)},_enabled:function(a){a?this.execute_btn.unwait():this.execute_btn.wait(),a?this.history_form.portlet.enable():this.history_form.portlet.disable(),_.each(this.forms,function(b){a?b.portlet.enable():b.portlet.disable()})},_isWorkflowParameter:function(b){return"$"===String(b).substring(0,1)?a.sanitize(b.substring(2,b.length-1)):void 0}});return{View:f}});
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