Greg Von Kuster 20126a37a4 Bug fixes, enhancements (including a new test) for the aggregate_binned_scores_in_intervals tool and added new code file for handling tool exceptions.

2007-09-19 19:45:28 +00:00

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data_source

Added support for gff3 datatype

2007-09-18 15:43:44 +00:00

emboss

Fix for EMBOSS:fuzztran change in commandline parameters.

2007-07-02 16:06:33 +00:00

encode

Have interval readers ignore comments as well as headers.

2007-08-13 15:20:19 +00:00

extract

Enhanced sort tool to use columnlist tool parameter, altered functional test to work with new version. Some other miscellaneous cleanup.

2007-09-17 20:48:59 +00:00

filters

Better error handling for tools that use columnlist tool parameter.

2007-09-19 14:49:02 +00:00

hyphy

Adding HYPHY tool to compute dN/dS ratio.

2007-07-11 20:05:20 +00:00

new_operations

Changed the output type of get_flanks tool to 'interval' so as to ignore the extra BED fields while displaying the data in UCSC. Also skipped lines with negative start/end co-ordinates.

2007-09-18 15:33:01 +00:00

patmat

change the output format of information file

2007-08-28 04:16:18 +00:00

plotting

Better error handling for tools that use columnlist tool parameter.

2007-09-19 14:49:02 +00:00

stats

Bug fixes, enhancements (including a new test) for the aggregate_binned_scores_in_intervals tool and added new code file for handling tool exceptions.

2007-09-19 19:45:28 +00:00

validation

Cleanup: removing the cookbook package. Bunch and odict move to galaxy.util, tools

2007-07-31 15:45:59 +00:00

visualization

Fix for invalid interval file sent to build_ucsc_custom_track.

2007-08-03 15:15:43 +00:00