Files
galaxy/lib/tool_shed/context.py
T

173 lines
4.6 KiB
Python

import abc
from typing import Optional
from sqlalchemy.orm import scoped_session
from typing_extensions import Protocol
from galaxy.security.idencoding import IdEncodingHelper
from galaxy.work.context import (
GalaxyAbstractRequest,
GalaxyAbstractResponse,
)
from tool_shed.structured_app import ToolShedApp
from tool_shed.webapp.model import (
GalaxySession,
User,
)
from tool_shed.webapp.model.mapping import ToolShedModelMapping
class ProvidesAppContext(Protocol):
"""For transaction-like objects to provide the shed convenience layer for
database and event handling.
Mixed in class must provide `app` property.
"""
@abc.abstractproperty
def app(self) -> ToolShedApp:
"""Provide access to the shed ``app`` object."""
@property
def security(self) -> IdEncodingHelper:
return self.app.security
@property
def sa_session(self) -> scoped_session:
"""Provide access to Galaxy's SQLAlchemy session.
:rtype: galaxy.model.scoped_session.galaxy_scoped_session
"""
return self.model.session
@property
def model(self) -> ToolShedModelMapping:
"""Provide access to Tool Shed's model mapping class."""
return self.app.model
class ProvidesUserContext(ProvidesAppContext, Protocol):
"""For transaction-like objects to provide Galaxy convenience layer for
reasoning about users.
Mixed in class must provide `user` and `app`
properties.
"""
@abc.abstractproperty
def user(self) -> Optional[User]:
"""Provide access to the user object."""
@property
def anonymous(self) -> bool:
return self.user is None
@property
def user_is_admin(self) -> bool:
return self.app.config.is_admin_user(self.user)
@property
def user_is_bootstrap_admin(self) -> bool:
"""Master key provided so there is no real user"""
user = self.user
return not self.anonymous and user is not None and user.bootstrap_admin_user
class ProvidesRepositoriesContext(ProvidesUserContext, Protocol):
@abc.abstractproperty
def repositories_hostname(self) -> str:
"""Provide access to hostname used by target mercurial server."""
class SessionRequestContext(ProvidesRepositoriesContext, Protocol):
@abc.abstractmethod
def get_galaxy_session(self) -> Optional[GalaxySession]: ...
@abc.abstractmethod
def set_galaxy_session(self, galaxy_session: GalaxySession): ...
@abc.abstractproperty
def request(self) -> GalaxyAbstractRequest: ...
@abc.abstractproperty
def response(self) -> GalaxyAbstractResponse: ...
@abc.abstractmethod
def url_builder(self): ...
@abc.abstractproperty
def session_csrf_token(self) -> str: ...
class SessionRequestContextImpl(SessionRequestContext):
_app: ToolShedApp
_user: Optional[User]
_galaxy_session: Optional[GalaxySession]
def __init__(
self,
app: ToolShedApp,
request: GalaxyAbstractRequest,
response: GalaxyAbstractResponse,
user: Optional[User] = None,
galaxy_session: Optional[GalaxySession] = None,
url_builder=None,
):
self._app = app
self._user = user
self._galaxy_session = galaxy_session
self._url_builder = url_builder
self.__request = request
self.__response = response
@property
def app(self) -> ToolShedApp:
return self._app
@property
def url_builder(self):
return self._url_builder
@property
def user(self) -> Optional[User]:
return self._user
def get_galaxy_session(self) -> Optional[GalaxySession]:
return self._galaxy_session
def set_galaxy_session(self, galaxy_session: GalaxySession):
self._galaxy_session = galaxy_session
if galaxy_session.user:
self._user = galaxy_session.user
@property
def repositories_hostname(self) -> str:
return str(self.request.base).rstrip("/")
@property
def host(self):
return self.__request.host
@property
def request(self) -> GalaxyAbstractRequest:
return self.__request
@property
def response(self) -> GalaxyAbstractResponse:
return self.__response
# Following three things added v2.0 frontend
@property
def session_csrf_token(self):
token = ""
if self._galaxy_session:
token = self.security.encode_id(self._galaxy_session.id, kind="csrf")
return token
@property
def galaxy_session(self) -> Optional[GalaxySession]:
return self._galaxy_session
def log_event(self, str):
pass