Files
galaxy/scripts/cleanup_datasets/remove_renamed_datasets_from_disk.py
T

32 lines
988 B
Python

#!/usr/bin/env python
"""
Removes a dataset file ( which was first renamed by appending _purged to the file name ) from disk.
Usage: python remove_renamed_datasets_from_disk.py renamed.log
"""
import sys, os
assert sys.version_info[:2] >= ( 2, 4 )
def main():
infile = sys.argv[1]
outfile = infile + ".removed.log"
out = open( outfile, 'w' )
print >> out, "# The following renamed datasets have been removed from disk"
i = 0
removed_files = 0
for i, line in enumerate( open( infile ) ):
line = line.rstrip( '\r\n' )
if line and line.startswith( '/var/opt/galaxy' ):
try:
os.unlink( line )
print >> out, line
removed_files += 1
except Exception, exc:
print >> out, "# Error, exception " + str( exc ) + " caught attempting to remove " + line
print >> out, "# Removed " + str( removed_files ) + " files"
if __name__ == "__main__":
main()