Jeremy Goecks 36017bc964 Make gops subtract tool compatible with GFF features rather than lines.

2011-05-03 11:35:21 -04:00

..

basecoverage.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

cluster.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

column_join.py

Fixed another bug in column join so it will handle filling empty columns properly

2010-08-20 17:04:16 -04:00

column_join.xml

Updated column join to handle situation when last column is a join column and a row is missing that column

2010-08-20 14:40:39 -04:00

complement.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

concat.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

coverage.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

flanking_features.py

Fixed a bug in fetch closest features - adjacent upstream feature will now be reported in the output.

2010-12-03 15:07:49 -05:00

flanking_features.xml

Fixed a bug in fetch closest features - adjacent upstream feature will now be reported in the output.

2010-12-03 15:07:49 -05:00

get_flanks.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

get_flanks.xml

Adjust image links in tools to work with a proxy prefix [Brad Chapman]. Fixes #141

2010-12-14 14:22:13 -05:00

gops_basecoverage.py

Modified strand column assignment to the NiceReaderWrapper object in basecoverage tool. Previously, if the input had no strand column declared, the object would have a default strand col of 5, and return a coverage of 0 as c5 might not have been a valid strand col.

2010-02-10 14:14:55 -05:00

gops_cluster.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_complement.py

Move ucsc and gbrowse data from static to tool-data/shared.

2008-06-03 18:53:26 +00:00

gops_concat.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_coverage.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_intersect.py

Make gops subtract tool compatible with GFF features rather than lines.

2011-05-03 11:35:21 -04:00

gops_join.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_merge.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_subtract.py

Make gops subtract tool compatible with GFF features rather than lines.

2011-05-03 11:35:21 -04:00

intersect.xml

Refactor and enhance trackster visual analytics: (a) move all visual analytics code into Tool class for encapsulation; (b) put tool outputs in appropriate history when user is rerunning his own tool; (c) enable users not logged in to run tools; (d) use tool HTML to display inputs rather than sliders.

2011-04-05 11:51:48 -04:00

join.xml

Typos in tool confs

2011-03-21 13:48:28 -04:00

merge.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

operation_filter.py

Improvements to GOPS subtract: (a) preserve metadata for interval inputs; (b) allow arbitrary mix of interval and GFF inputs; and (c) functional tests updated to test new functionality.

2010-06-23 10:43:17 -04:00

subtract_query.py

Deprecated code corrections for supporting Python 2.6. Many of the Python 2.6 eggs are still throwing DeprecationWarning messages, so some things still won't work. Eggs for 2.6 need to be re-scrambled after corrections are made.

2009-08-14 15:37:31 -04:00

subtract_query.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

subtract.xml

Make gops subtract tool compatible with GFF features rather than lines.

2011-05-03 11:35:21 -04:00

tables_arithmetic_operations.pl

Adding new regional variation tools developed by Zaky from Makova lab.

2010-04-27 15:36:55 -04:00

tables_arithmetic_operations.xml

Adding new regional variation tools developed by Zaky from Makova lab.

2010-04-27 15:36:55 -04:00