Daniel Blankenberg 7b6ee414f0 Have GATK file listings written as html, be sorted.

2011-05-12 12:13:18 -04:00

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analyze_covariates.xml

Some minor fixes for 5537:1a379a0f2ecc.

2011-05-11 10:46:46 -04:00

count_covariates.xml

Allow gatk_wrapper.py to run in versions of python<2.6.

2011-05-11 16:02:06 -04:00

gatk_wrapper.py

Have GATK file listings written as html, be sorted.

2011-05-12 12:13:18 -04:00

indel_realigner.xml

Some minor fixes for 5537:1a379a0f2ecc.

2011-05-11 10:46:46 -04:00

realigner_target_creator.xml

First pass at adding some GATK tools. Included tools are "Realigner Target Creator", "Indel Realigner", "Count Covariates", "Table Recalibration", "Analyze Covariates" and "Unified Genotyper". These tool integrations should be considered beta: changes that will not be backwards-compatible with workflows and re-run functionality should be expected.

2011-05-11 09:38:23 -04:00

table_recalibration.xml

First pass at adding some GATK tools. Included tools are "Realigner Target Creator", "Indel Realigner", "Count Covariates", "Table Recalibration", "Analyze Covariates" and "Unified Genotyper". These tool integrations should be considered beta: changes that will not be backwards-compatible with workflows and re-run functionality should be expected.

2011-05-11 09:38:23 -04:00

unified_genotyper.xml

First pass at adding some GATK tools. Included tools are "Realigner Target Creator", "Indel Realigner", "Count Covariates", "Table Recalibration", "Analyze Covariates" and "Unified Genotyper". These tool integrations should be considered beta: changes that will not be backwards-compatible with workflows and re-run functionality should be expected.

2011-05-11 09:38:23 -04:00