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31 lines
1.4 KiB
Plaintext
31 lines
1.4 KiB
Plaintext
#This is a sample file distributed with Galaxy that enables tools
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#to use a directory of 2bit genome files for use with Lastz. You will
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#need to supply these files and then create a lastz_seqs.loc file
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#similar to this one (store it in this directory) that points to
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#the directories in which those files are stored. The lastz_seqs.loc
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#file has this format (white space characters are TAB characters):
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#
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#<unique_build_id> <display_name> <file_path>
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#
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#So, for example, if your lastz_seqs.loc began like this:
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#
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#hg18 Human (Homo sapiens): hg18 /depot/data2/galaxy/twobit/hg18.2bit
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#hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/twobit/hg19.2bit
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#mm9 Mouse (Mus musculus): mm9 /depot/data2/galaxy/twobit/mm9.2bit
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#
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#then your /depot/data2/galaxy/twobit/ directory
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#would need to contain the following 2bit files:
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#
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#-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 hg18.2bit
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#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 hg19.2bit
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#-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 mm9.2bit
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#
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#Your lastz_seqs.loc file should include an entry per line for
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#each file you have stored that you want to be available. Note that
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#your files should all have the extension '2bit'.
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#
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#Note that for backwards compatibility with workflows, the unique ID of
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#an entry must be the path that was in the original loc file, because that
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#is the value stored in the workflow for that parameter.
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#
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