Greg Von Kuster 71d16671bc First pass at final phase of cleaning up approach to dynamic select lists. Added a functional test to phastOdds tool. The following tools now use this latest approach to dynamic optioons: ...

axt_to_fasta, phastOdds, axt_to_lav, random_intervals, extractAxt_wrapper, axt_to_concat_fasta, aggregate_binned_scores.

2007-11-16 20:08:31 +00:00

..

data_source

Enhancements to the way dynamic_options work in order to enable tools using dynemic_options to function in workdflow.

2007-10-19 20:42:11 +00:00

emboss

Changing all tools that use 'text' as file extension to now use 'txt'. We are eliminating the use of 'text' as a file extension within Galaxy and will now use only 'txt' for Text data types.

2007-09-27 12:24:27 +00:00

encode

First pass at final phase of cleaning up approach to dynamic select lists. Added a functional test to phastOdds tool. The following tools now use this latest approach to dynamic optioons:

2007-11-16 20:08:31 +00:00

extract

First pass at final phase of cleaning up approach to dynamic select lists. Added a functional test to phastOdds tool. The following tools now use this latest approach to dynamic optioons:

2007-11-16 20:08:31 +00:00

filters

First pass at final phase of cleaning up approach to dynamic select lists. Added a functional test to phastOdds tool. The following tools now use this latest approach to dynamic optioons:

2007-11-16 20:08:31 +00:00

hyphy

Adding HYPHY tool to compute dN/dS ratio.

2007-07-11 20:05:20 +00:00

new_operations

Bug fix in subtract_query1, made CustomTrack.sniff() more restrictive.

2007-10-30 13:28:24 +00:00

patmat

Changing all tools that use 'text' as file extension to now use 'txt'. We are eliminating the use of 'text' as a file extension within Galaxy and will now use only 'txt' for Text data types.

2007-09-27 12:24:27 +00:00

plotting

More ColumnListParameter cleanup. Eliminated dynamic options from some tools by using ColumnListParameter.

2007-10-18 17:29:47 +00:00

stats

First pass at final phase of cleaning up approach to dynamic select lists. Added a functional test to phastOdds tool. The following tools now use this latest approach to dynamic optioons:

2007-11-16 20:08:31 +00:00

validation

Cleanup: removing the cookbook package. Bunch and odict move to galaxy.util, tools

2007-07-31 15:45:59 +00:00

visualization

Fix for building custom tracks from interval files.

2007-11-10 01:32:19 +00:00