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40 lines
913 B
Bash
40 lines
913 B
Bash
#!/bin/sh
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SAMPLES="
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datatype_converters_conf.xml.sample
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reports_wsgi.ini.sample
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tool_conf.xml.sample
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universe_wsgi.ini.sample
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tool-data/alignseq.loc.sample
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tool-data/binned_scores.loc.sample
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tool-data/blastdb.loc.sample
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tool-data/encode_datasets.loc.sample
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tool-data/liftOver.loc.sample
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tool-data/maf_index.loc.sample
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tool-data/maf_pairwise.loc.sample
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tool-data/microbial_data.loc.sample
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tool-data/phastOdds.loc.sample
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tool-data/quality_scores.loc.sample
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tool-data/regions.loc.sample
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tool-data/twobit.loc.sample
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"
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for sample in $SAMPLES; do
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file=`echo $sample | sed -e 's/\.sample$//'`
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if [ -f $file ]; then
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echo "Not overwriting existing $file"
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else
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echo "Copying $sample to $file"
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cp $sample $file
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fi
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done
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for dir in database/files database/tmp; do
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if [ ! -d $dir ]; then
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echo "Creating $dir"
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mkdir $dir
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fi
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done
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python ./scripts/fetch_eggs.py
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