Daniel Blankenberg f97a380a56 Add ToolOutputActions to set dbkeys for LiftOver tool and both Bowtie wrappers; remove no longer needed code files.

2010-08-09 21:06:18 -04:00

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phastOdds

Fix locations of cached data for tests

2010-02-25 12:27:07 -05:00

extract_genomic_dna.py

Fix bug so that fasta identifier produced by 'extract genomic dna' tool for GFF files is consistent with GFF coordinates.

2010-07-15 17:03:14 -04:00

extract_genomic_dna.xml

Enable 'extract genomic DNA' tool to accept and produce GFF files and added functional tests for this feature.

2010-07-08 15:43:22 -04:00

extract_GFF_Features.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

extract_GFF_Features.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

liftOver_wrapper.py

Fix try-except-finally bug to be compatible with Python 2.4 in several tools and twilltestcase.py. Updated liftOver test to replace hard-coded (incorrect) path and modified code file to allow for new path. Improved bowtie error handling.

2010-03-10 11:51:00 -05:00

liftOver_wrapper.xml

Add ToolOutputActions to set dbkeys for LiftOver tool and both Bowtie wrappers; remove no longer needed code files.

2010-08-09 21:06:18 -04:00