galaxy

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Nate Coraor ee1a2b8972 Relocate the external set_metadata script to the galaxy_utils package.

A temporary script in the job working directory will be created to
import and call it (trusting that `$PYTHONPATH` in a job script is
always set to `galaxy/lib`). This is so the auto-detect button can defer
command line generation until job preparation time for the case that
handlers and web processes run from different paths.

Related Trello card: https://trello.com/c/v2eCOYZi

(cherry picked from commit b043d43a35)

Move set_metadata script from galaxy_utils to galaxy, remove unused
imports.

(cherry picked from commit e093f58d63)

Restore old set_metadata files to prevent failure of jobs running at
upgrade time.

(cherry picked from commit 4443b64eae)

Fix unit test broken by set_metadata changes.

(cherry picked from commit d242286187)

Use the job working directory for creating MetadataFiles in external
set_metadata, rather than new_files_path.

(cherry picked from commit 8116d2c917)

2015-03-12 13:17:41 -04:00

dataset_collections

Bugfix: Rework collection matching logic so it properly matches combined collection/subcollection mapping.

2014-05-07 15:39:03 -05:00

datatypes/dataproviders

Allow run_unit_tests.sh to execute all unit tests in test/unit.

2013-12-04 11:46:32 -06:00

jobs

Relocate the external set_metadata script to the galaxy_utils package.

2015-03-12 13:17:41 -04:00

managers

Fix path insertion vs appending of <galaxy>/lib for unit tests.