Daniel Blankenberg 6eaa6d511c Update interval2maf tools to use one script file.

2007-11-12 21:06:24 +00:00

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data_source

Enhancements to the way dynamic_options work in order to enable tools using dynemic_options to function in workdflow.

2007-10-19 20:42:11 +00:00

emboss

Changing all tools that use 'text' as file extension to now use 'txt'. We are eliminating the use of 'text' as a file extension within Galaxy and will now use only 'txt' for Text data types.

2007-09-27 12:24:27 +00:00

encode

Have interval readers ignore comments as well as headers.

2007-08-13 15:20:19 +00:00

extract

Update interval2maf tools to use one script file.

2007-11-12 21:06:24 +00:00

filters

Fix for sorter tool to allow for "tabular" dataset consisting of 1 column.

2007-11-10 19:50:09 +00:00

hyphy

Adding HYPHY tool to compute dN/dS ratio.

2007-07-11 20:05:20 +00:00

new_operations

Bug fix in subtract_query1, made CustomTrack.sniff() more restrictive.

2007-10-30 13:28:24 +00:00

patmat

Changing all tools that use 'text' as file extension to now use 'txt'. We are eliminating the use of 'text' as a file extension within Galaxy and will now use only 'txt' for Text data types.

2007-09-27 12:24:27 +00:00

plotting

More ColumnListParameter cleanup. Eliminated dynamic options from some tools by using ColumnListParameter.

2007-10-18 17:29:47 +00:00

stats

Enhancements / fixes to new approach to generating dynamic options. Fixes to aggregate scores and wiggle to simple tools. All functional tests should now pass.

2007-10-26 12:38:56 +00:00

validation

Cleanup: removing the cookbook package. Bunch and odict move to galaxy.util, tools

2007-07-31 15:45:59 +00:00

visualization

Fix for building custom tracks from interval files.

2007-11-10 01:32:19 +00:00