mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-10-28 02:58:18 +08:00
Michael R. Crusoe
c00967cca4
Fixes: https://github.com/galaxyproject/galaxy/issues/16394 Also upgrade code to Python 3.8 syntax with: ``` ack --type=python -f | grep -v '^lib/galaxy/schema/bco/\|^lib/galaxy/schema/drs/\|lib/tool_shed_client/schema/trs.*.py\|^tools/\|^.venv/\|^.tox/' | grep -v '^lib/galaxy/files/sources/\|^lib/galaxy/job_metrics/\|^lib/galaxy/objectstore/\|^lib/galaxy/tool_util/\|^lib/galaxy/util/' | xargs pyupgrade --py38-plus ```
60 lines
1.8 KiB
YAML
60 lines
1.8 KiB
YAML
name: macOS startup
|
|
on:
|
|
push:
|
|
paths-ignore:
|
|
- 'doc/**'
|
|
- 'lib/galaxy_test/selenium/**'
|
|
pull_request:
|
|
paths-ignore:
|
|
- 'doc/**'
|
|
- 'lib/galaxy_test/selenium/**'
|
|
concurrency:
|
|
group: ${{ github.workflow }}-${{ github.ref }}
|
|
cancel-in-progress: true
|
|
jobs:
|
|
test:
|
|
name: Startup test
|
|
runs-on: macos-latest
|
|
strategy:
|
|
fail-fast: false
|
|
matrix:
|
|
python-version: ['3.8', '3.11']
|
|
defaults:
|
|
run:
|
|
shell: bash -l {0}
|
|
steps:
|
|
- uses: actions/checkout@v3
|
|
with:
|
|
path: 'galaxy root'
|
|
- uses: actions/setup-node@v3
|
|
with:
|
|
node-version: '18.12.1'
|
|
cache: 'yarn'
|
|
cache-dependency-path: 'galaxy root/client/yarn.lock'
|
|
- name: Get full Python version
|
|
id: full-python-version
|
|
shell: bash
|
|
run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
|
|
- name: Cache pip dir
|
|
uses: actions/cache@v3
|
|
id: pip-cache
|
|
with:
|
|
path: ~/Library/Caches/pip
|
|
key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
|
|
- name: Cache tox env
|
|
uses: actions/cache@v3
|
|
with:
|
|
path: .tox
|
|
key: tox-cache-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('galaxy root/requirements.txt') }}-osx
|
|
- name: Install miniconda # use this job to test using Python from a conda environment
|
|
uses: conda-incubator/setup-miniconda@v2
|
|
with:
|
|
activate-environment: ''
|
|
- name: Install tox
|
|
run: pip install tox
|
|
- name: Run tests
|
|
run: tox -e first_startup
|
|
working-directory: 'galaxy root'
|
|
env:
|
|
GALAXY_CONDA_PYTHON_VERSION: "${{ matrix.python-version }}"
|