Nate Coraor bf606c99f8 merge

2009-01-30 11:39:39 -05:00

..

cleanup_datasets

Normalize the model supporting the new library features. This rev assumes all current Library tables will be dropped so they are re-created at server start-up ( all library data will be lost ). Normalized objects are as follows:

2009-01-28 16:29:30 -05:00

metagenomics

add scripts for preparing nt and wgs databases.

2008-03-27 17:41:40 +00:00

microbes

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

others

Script to enumerate GOPS JOIN jobs that could have returned an incorrect result before the issue with minimum overlap was fixed last week.

2008-12-22 13:35:01 -05:00

scramble/scripts

Use LD_RUN_PATH when building pbs_python

2008-10-30 16:11:44 -04:00

taxonomy

Finalizing taxonomy. Removed taxonomy processing from scripts. This does not require sqlite anymore. Script for fetching taxonomy now uses flat files directly and is much faster

2008-03-20 19:38:31 +00:00

update_database

Normalize the model supporting the new library features. This rev assumes all current Library tables will be dropped so they are re-created at server start-up ( all library data will be lost ). Normalized objects are as follows:

2009-01-28 16:29:30 -05:00

check_eggs.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

check_galaxy.py

Update check_galaxy for new twill.

2008-09-25 10:19:56 -04:00

dist-scramble.py

dist-scramble, scrambles eggs for distribution.

2008-05-02 17:05:40 +00:00

fetch_eggs.py

Add fetch_eggs option to pull for other platforms (e.g. cluster nodes)

2009-01-30 11:37:18 -05:00

get_platforms.py

Add fetch_eggs option to pull for other platforms (e.g. cluster nodes)

2009-01-30 11:37:18 -05:00

get_python.sh

The enormous eggs-out-of-svn commit. More details at:

2008-03-27 19:27:05 +00:00

nosetests.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

paster.py

Since tempfiles seem to occasionally be left behind, allow logging of

2008-12-23 13:28:27 -05:00

rst2html.py

Cleaning up modules. Still a few stragglers that can't be easily eggified.

2006-11-15 18:27:21 +00:00

scramble.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

yuicompressor.jar

Upgrade yuicompresor to version 2.3.5

2008-05-01 15:05:30 +00:00