mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 13:50:20 +08:00
John Chilton
6d37b2890c
create_db and manage_db should now work with install as well. Migrations are symbolic links into lib/galaxy/model/migrate/versions of migrations affecting these tables. All future migrations to these tables should created in one place like this and linked in the other.
43 lines
1.4 KiB
Python
Executable File
43 lines
1.4 KiB
Python
Executable File
"""
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Creates the initial galaxy database schema using the settings defined in
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universe_wsgi.ini.
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This script is also wrapped by create_db.sh.
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.. note: pass '-c /location/to/your_config.ini' for non-standard ini file
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locations.
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.. note: if no database_connection is set in universe_wsgi.ini, the default,
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sqlite database will be constructed.
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Using the database_file setting in universe_wsgi.ini will create the file
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at the settings location (??)
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.. seealso: universe_wsgi.ini, specifically the settings: database_connection
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and database file
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"""
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import sys
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import os.path
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new_path = [ os.path.join( os.getcwd(), "lib" ) ]
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new_path.extend( sys.path[1:] ) # remove scripts/ from the path
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sys.path = new_path
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from galaxy.model.orm.scripts import get_config
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from galaxy.model.migrate.check import create_or_verify_database as create_db
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from galaxy.model.tool_shed_install.migrate.check import create_or_verify_database as create_install_db
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from galaxy.webapps.tool_shed.model.migrate.check import create_or_verify_database as create_tool_shed_db
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def invoke_create():
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config = get_config(sys.argv)
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if config['database'] == 'galaxy':
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create_db(config['db_url'], config['config_file'])
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elif config['database'] == 'tool_shed':
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create_tool_shed_db(config['db_url'])
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elif config['database'] == 'install':
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create_install_db(config['db_url'])
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if __name__ == "__main__":
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invoke_create()
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