Dave Bouvier 83af05b1f2 Migrate 46 tools from the distribution to the tool shed: gatk, gops, regional variation.

2014-04-01 11:04:32 -04:00

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annotation_profiler

Add information for UCSC data to annotation profiler.

2011-11-16 10:40:55 -05:00

data_source

whitespace

2014-02-20 18:14:09 -06:00

evolution

Migrate tools from the distribution to the tool shed, including but not limited to samtools and fastx_toolkit tools.

2013-09-26 10:05:00 -04:00

extract

Remove broken and/or obsolete tools.

2014-01-27 13:58:31 -05:00

fasta_tools

Enable fasta_to_len conversion to use only first word in title; this is standards compliant and used by default for automatic conversion.

2012-03-08 11:09:14 -05:00

filters

Remove dependency on simplejson; convert everything over to using the json module in the python standard library.

2014-01-10 07:29:05 -05:00

genomespace

Update GenomeSpace exporter directory listing to send the now working/required accept string.

2014-03-13 17:07:23 -04:00

maf

Make maf-to-bed object-store aware

2013-03-06 12:40:31 -05:00

meme

Specify meme requirement for fimo tool.

2012-02-02 21:29:30 -06:00

metag_tools

Remove tool that was migrated to the tool shed in 10719:c2f06b5cfba1. Remove test data that belonged to tools that were removed in 12288:401ee23dcf2f.

2014-02-17 13:05:00 -05:00

multivariate_stats

Fixed a bug in PCA tool - standard deviation & prop variance values are now sorted by PC order.

2011-07-15 10:33:02 -04:00

mutation

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

next_gen_conversion

Fixed error in solid2fasta.xml preventing help text from displaying.

2012-09-04 10:15:18 -04:00

ngs_simulation

Prevent no choice in multiple selections.

2013-09-18 14:43:59 +02:00

phenotype_association

Migrate 43 tools from the distribution to the tool shed.

2014-01-27 09:53:14 -05:00

plotting

Merged in abrenner/galaxy-central (pull request #215)

2013-10-16 22:12:40 -05:00

solid_tools

Fix tool tip for compute quality statistics

2013-03-19 12:04:24 -04:00

sr_assembly

Add <version_command>.

2013-12-20 10:58:08 +01:00

sr_mapping

Migrate 43 tools from the distribution to the tool shed.

2014-01-27 09:53:14 -05:00

stats

Merged in clayton_turner/galaxy-central (pull request #322)

2014-02-20 10:35:58 -06:00

validation

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visualization

Migrate 43 tools from the distribution to the tool shed.

2014-01-27 09:53:14 -05:00