Nate Coraor 244fc834cd Explicitly include PyPI as an --extra-index-url to pip so we can install ...

from PyPI even when a package exists (but the correct version or
architecture does not exist) on wheels.galaxyproject.org. Previously,
PyPI was only checked after wheels.galaxyproject.org because pypiserver
performs an automatic redirect to PyPI for any packages that do not
exist in its index.

2017-09-21 16:33:40 -04:00

..

api

Fix E127 errors introduced by previous commit

2017-08-17 11:35:39 +01:00

auth

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

cleanup_datasets

Remove container config log message from cleanup scripts logs

2017-08-18 12:35:04 +01:00

communication

Fix import order and Python3 compatibility

2017-08-18 12:35:04 +01:00

data_libraries

Fix E127 errors introduced by previous commit

2017-08-17 11:35:39 +01:00

grt

not needed

2017-08-10 14:02:18 +02:00

loc_files

Fix E127 errors introduced by previous commit

2017-08-17 11:35:39 +01:00

metagenomics

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

microbes

Fix more indentation errors

2017-08-17 11:35:39 +01:00

migrate_tools

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

others

Fix E127 errors introduced by previous commit

2017-08-17 11:35:39 +01:00

slideshow

Align architecture slides with training-material remarkjs template.

2017-02-10 15:32:58 -05:00

taxonomy

Tweaks to taxonomy tools

2010-11-15 15:04:59 -05:00

tool_shed

add logging to ts index building

2017-09-06 14:05:05 -04:00

tools

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

__init__.py

Adding db_shell.py that can be used to simplify writing command line

2012-03-05 12:11:53 -06:00

binary_compatibility.py

Add the scientific platform (Scientific Linux) as binary compatible

2016-02-03 13:33:42 -05:00

bootstrap_history.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

build_toolbox.py

Fix I201 errors from flake8-import-order

2016-11-23 18:31:04 +00:00

build_universe_config.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

check_eggs.py

Add stub fetch_eggs.py/check_eggs.py for people whose build/test/run

2015-11-06 11:06:11 -05:00

check_galaxy.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

check_python.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

common_startup_functions.sh

Centralize launching server for reports and tool shed.

2017-08-10 13:14:55 -04:00

common_startup.sh

Explicitly include PyPI as an --extra-index-url to pip so we can install

2017-09-21 16:33:40 -04:00

config_sample_to_kwalify.py

Scripts to manage configuration infrastructure.

2017-08-10 13:14:55 -04:00

create_db.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

db_shell.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

drmaa_external_killer.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

drmaa_external_runner.py

Fix E127 errors introduced by previous commit

2017-08-17 11:35:39 +01:00

dump_tour.py

PEP-8 fix as pointed out by @nsoranzo.

2016-12-01 15:58:12 -05:00

edam_mapping.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

external_chown_script.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

extract_dataset_part.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

extract_toolbox_sections.py

Fix E127 errors introduced by previous commit

2017-08-17 11:35:39 +01:00

fetch_eggs.py

Python3: scripts/cleanup_datasets scripts/data_libraries

2016-06-25 21:49:25 -04:00

functional_tests.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

galaxy-main

Fix a bunch of errors reported by Sphinx

2016-10-24 19:42:19 +01:00

get_platforms.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

helper.py

Fix E127 errors introduced by previous commit

2017-08-17 11:35:39 +01:00

manage_db.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

manage_tool_dependencies.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

manage_tools.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

nosetests.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

paster.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

patch.sh

Add the script I used to create security patches

2016-02-24 16:54:30 -05:00

rst2html.py

Cleaning up modules. Still a few stragglers that can't be easily eggified.

2006-11-15 18:27:21 +00:00

runtime_stats.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

secret_decoder_ring.py

Fix import order and Python3 compatibility

2017-08-18 12:35:04 +01:00

set_dataset_sizes.py

Fix E127 errors introduced by previous commit

2017-08-17 11:35:39 +01:00

set_user_disk_usage.py

Fix E127 errors introduced by previous commit

2017-08-17 11:35:39 +01:00

summarize_timings.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

sync_reports_config.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

transfer.py

Fix E127 errors introduced by previous commit

2017-08-17 11:35:39 +01:00

update_shed_config_path.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

validate_tools.sh

Refactor most of tool validation for CI into a standalone script.

2016-09-16 15:07:42 -04:00