mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 22:06:53 +08:00
Nate Coraor
7560751dc8
Whether running locally or via PBS, $PATH should now be handled in your user's environment. This also fixes problems like PYTHONPATH on the new blast nodes being wrong (because they are x86_64 and the frontends are i686). Note that you can actually start Galaxy without having an eggs dir now.
49 lines
1.6 KiB
Python
Executable File
49 lines
1.6 KiB
Python
Executable File
"""
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usage: fetch_eggs.py [egg_name]
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With no arguments, fetches all eggs necessary according to the
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settings in universe_wsgi.ini.
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egg_name - Fetch only this egg (as defined in eggs.ini) or 'all' for
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all eggs (even those not required by your settings).
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"""
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import os, sys, logging
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root = logging.getLogger()
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root.setLevel( 10 )
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root.addHandler( logging.StreamHandler( sys.stdout ) )
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lib = os.path.abspath( os.path.join( os.path.dirname( __file__ ), "..", "lib" ) )
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sys.path.append( lib )
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from galaxy.eggs import *
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c = Crate()
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c.parse()
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try:
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if len( sys.argv ) == 1:
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galaxy_config = GalaxyConfig()
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ignore = []
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for name in c.get_names():
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if not galaxy_config.check_conditional( name ):
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ignore.append( name )
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c.fetch( ignore=ignore )
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else:
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if sys.argv[1] == 'all':
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c.fetch()
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else:
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egg = c.get( sys.argv[1] )
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if egg is None:
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print "error: %s not in eggs.ini" % sys.argv[1]
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sys.exit( 1 )
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egg.fetch()
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except EggNotFetchable, e:
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print "One of the python eggs necessary to run Galaxy couldn't be downloaded"
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print "automatically. You may want to try building it by hand with:"
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print " python scripts/scramble.py %s" % e
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sys.exit( 1 )
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except PlatformNotSupported, e:
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print "Your platform (%s) is not supported." % e
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print "Pre-built galaxy eggs are not available from the Galaxy developers for"
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print "your platform. You may be able to build them by hand with:"
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print " python scripts/scramble.py"
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sys.exit( 1 )
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