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galaxy/test/integration
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mvdbeek a1ecabdfbc Adjust API tests 
Most of the time we just want an OK status code. 202, 204, 200 should
all be OK and some of this depends on the Galaxy instance config,
so this should be more robust to future changes.
2025-09-23 22:16:20 +02:00
..
chained_dyndest_rules
Fix new UP031 errors from ruff 0.4.2
2024-04-29 00:09:38 +01:00
delay_rules
…
job_resource_rules
Add integration test for ignoring invalid resource request in tool state
2023-08-22 15:29:03 +02:00
mock_biotools_content/data
Parse edam operation and topic data from bio.tools if available.
2021-09-07 14:29:38 -04:00
objectstore
Disable celery tasks for Onedata tests
2025-09-18 04:10:52 +01:00
objectstore_selection_rules
Apply black formatting.
2022-02-03 07:42:20 -05:00
oidc
Restore all environment variables at the end of Keycloak integration tests
2025-09-18 04:10:51 +01:00
panel_views_1
Exclude multiple_versions from test_global_filters_on_integrated_panel
2023-11-16 15:08:21 +01:00
resubmission_rules
Apply black formatting.
2022-02-03 07:42:20 -05:00
webdav
Pluggable URI handling across upload components.
2020-07-14 10:09:50 -04:00
__init__.py
…
chained_dyndest_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
conftest.py
Replace pytest-celery with `celery.contrib.pytest` plugin loading
2024-04-16 17:16:52 +01:00
delay_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
dockerized_job_conf.yml
Test that tmp_dir gets mounted correctly
2023-08-09 15:34:39 +02:00
dummy_job_resource_parameters.xml
Add integration test for ignoring invalid resource request in tool state
2023-08-22 15:29:03 +02:00
embedded_pulsar_docker_job_conf.yml
Drop more uWSGI legacy things
2022-03-15 21:32:00 +01:00
embedded_pulsar_job_conf.yml
Add test for proposed prod-like deployment
2025-09-21 17:03:17 +02:00
embedded_pulsar_metadata_extended_job_conf.yml
Disable conda_auto_init in embedded_pulsar_metadata_extended_job_conf.yml
2023-11-21 17:44:37 +01:00
embedded_pulsar_metadata_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
embedded_pulsar_singularity_job_conf.yml
Add `--no-mount tmp` for singularity destination in tests
2023-02-28 18:49:30 +00:00
fallback_container_resolver.yml
add test for loading a per destination container resolver config
2023-04-02 10:39:44 +02:00
file_sources_conf_remote_files.yml
Add url_regex matching for DRS filesources and add integration test
2023-06-14 19:27:31 +05:30
file_sources_conf_vault.yml
Add new secret type to user preferences that is not sent to client
2021-12-01 10:48:36 +05:30
file_sources_conf.yml
Restore original filename for file_source_conf_webdav.yml
2023-06-14 19:27:31 +05:30
handler_template_job_conf.xml
Integration tests for handler assignment methods
2019-01-04 16:46:29 -05:00
io_injection_job_conf.yml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
job_resource_error_recovery_job_conf.yml
Add integration test for ignoring invalid resource request in tool state
2023-08-22 15:29:03 +02:00
refgenie.yml
add more tests
2021-03-25 14:01:17 +01:00
resubmission_default_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_dynamic_job_conf.xml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_job_resource_parameters_conf.xml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_pulsar_job_conf.xml
Lower pulsar transport_timeout param instead of extending wait
2025-03-17 10:21:43 +01:00
resubmission_runners.py
Code cleanups from pyupgrade
2025-07-31 11:17:22 +01:00
resubmission_small_memory_job_conf.xml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_small_memory_resubmission_to_large_job_conf.xml
…
resubmission_tool_detected_always_error_job_conf.xml
Fix resubmission on tool error detection.
2018-11-23 14:32:04 +01:00
resubmission_tool_detected_resubmit_job_conf.xml
Fix resubmission on tool error detection.
2018-11-23 14:32:04 +01:00
sets_tmp_dir_expression_job_conf.xml
Fix another integration test
2021-02-25 13:49:58 +01:00
sets_tmp_dir_to_true_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
simple_job_conf.xml
Fix failing integration test.
2019-05-03 08:38:33 -04:00
singularity_job_conf.yml
require_container in tests
2023-06-20 10:28:21 +02:00
test_apache_nginx_sendfile.py
Merge remote-tracking branch 'upstream/release_22.05' into dev
2022-11-16 12:07:04 +01:00
test_async_downloads.py
Replace `unittest.TestCase` in API, framework, performance, Selenium and ToolShed tests
2022-11-07 15:44:01 +00:00
test_celery_tasks.py
Merge branch 'release_23.2' into dev
2024-01-18 12:23:00 +01:00
test_celery_user_rate_limit.py
Code cleanups from pyupgrade
2025-07-31 11:17:22 +01:00
test_chained_dynamic_destinations.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_cli_runners.py
Update to black 2024 stable style
2024-01-30 18:09:51 +00:00
test_coexecution.py
Code cleanups from pyupgrade
2025-07-31 11:17:22 +01:00
test_config_options_users.py
Fix Integeration typo
2022-11-23 01:20:00 +00:00
test_config_schema.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_configuration_decode.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_container_resolvers.py
Code cleanups from pyupgrade
2025-07-31 11:17:22 +01:00
test_containerized_jobs.py
Code cleanups from pyupgrade
2025-07-31 11:17:22 +01:00
test_data_manager_refgenie.py
Update to black 2024 stable style
2024-01-30 18:09:51 +00:00
test_data_manager_workflow_bundle.py
Add data manager bundle workflow integration test
2024-02-16 15:53:16 +01:00
test_data_manager.py
Update to black 2024 stable style
2024-01-30 18:09:51 +00:00
test_dataset_copy_metadata_files.py
Fix copying metadata to copied job outputs
2023-11-10 18:03:45 +01:00
test_dataset_hashing.py
Calculate hash for new non-deferred datasets when finishing a job
2024-11-21 15:55:14 +00:00
test_datatype_upload.py
Merge pull request #17106 from tuncK/tarxz
2024-03-01 11:03:36 -05:00
test_default_permissions.py
Use `history_id` fixture instead of instance attribute. More type annotations
2022-11-23 04:04:51 +00:00
test_display_applications.py
Update to black 2024 stable style
2024-01-30 18:09:51 +00:00
test_dynamic_edam_loading.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_edam_toolbox.py
change api/tool_panels from dict of views to dict containing
2023-10-26 12:50:31 -05:00
test_error_report.py
tool error integration test
2024-04-11 10:09:05 -04:00
test_extended_metadata_mapping.py
Numerous fixes for tool input format "21.01" parameters.
2024-10-30 10:52:08 -04:00
test_extended_metadata_outputs_to_working_directory.py
Fix and extend extended metadata outputs to working directory tests
2023-09-12 13:07:10 +02:00
test_extended_metadata.py
Fix collection element sorting in extended_metadata
2025-09-19 18:57:53 +02:00
test_fail_job_tool_unavailable.py
YamlToolSource parser fixes
2025-05-12 10:54:24 +02:00
test_fluent_metrics.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_flush_per_n_datasets.py
Rename classes derived from `IntegrationInstance` which are not test cases
2024-02-16 10:53:04 +00:00
test_galaxy_interactor.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_genomes.py
Drop support for Python 3.8
2025-02-25 19:20:46 +00:00
test_handler_assignment_methods.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_history_archiving.py
Type annotation fixes for mypy 1.16.0
2025-06-10 02:22:18 +01:00
test_history_import_export.py
Type annotation fixes for mypy 1.16.0
2025-06-10 02:22:18 +01:00
test_interactivetools_api.py
Code cleanups from pyupgrade
2025-07-31 11:17:22 +01:00
test_job_environments.py
Disable conda_auto_init in embedded_pulsar_metadata_extended_job_conf.yml
2023-11-21 17:44:37 +01:00
test_job_files_tus.py
Allow job files to consume TUS uploads
2024-01-16 10:03:02 -05:00
test_job_files.py
Code cleanups from pyupgrade
2025-07-31 11:17:22 +01:00
test_job_outputs_to_working_directory.py
Use celery in more integration tests
2022-05-26 12:48:44 +02:00
test_job_recovery.py
Even more typing
2022-11-28 04:50:00 +00:00
test_job_resource_error_recovery.py
Add integration test for ignoring invalid resource request in tool state
2023-08-22 15:29:03 +02:00
test_job_resubmission.py
fix test
2025-03-26 18:07:57 +01:00
test_kubernetes_runner.py
Code cleanups from pyupgrade
2025-07-31 11:17:22 +01:00
test_legacy_store_by.py
Rename classes derived from `IntegrationInstance` which are not test cases
2024-02-16 10:53:04 +00:00
test_local_job_cancellation.py
Use model classes from `galaxy.model instead of app.model` object
2025-02-26 12:41:40 +00:00
test_materialize_dataset_instance_tasks.py
Calculate hash for new non-deferred datasets when finishing a job
2024-11-21 15:55:14 +00:00
test_max_discovered_files.py
Fix up integration test for max discovered files
2024-03-01 22:45:39 -05:00
test_metadata_strategy.py
Test case to demonstrate disk usage update for work dir outputs is broken with celery_extended.
2023-05-18 16:01:14 +02:00
test_model_store_scripts.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_notifications.py
Adjust API tests
2025-09-23 22:16:20 +02:00
test_page_revision_json_encoding.py
Type annotation improvements
2025-02-21 15:46:14 +00:00
test_panel_views.py
Merge branch 'release_23.1' into dev
2023-11-21 09:36:51 +01:00
test_prefix_handling.py
Various fixes to path prefix handling
2023-05-05 16:38:17 +02:00
test_pulsar_embedded_containers.py
Use `history_id` fixture instead of instance attribute. More type annotations
2022-11-23 04:04:51 +00:00
test_pulsar_embedded_copy_working.py
test a tool with from_working_dir and pulsar
2019-12-13 22:58:32 +01:00
test_pulsar_embedded_extended_metadata.py
Test sessionless tag creation
2025-09-19 15:44:48 +02:00
test_pulsar_embedded_mq.py
Fix uploads in pulsar embedded test case
2025-02-26 14:55:08 +01:00
test_pulsar_embedded_remote_metadata.py
Fix tool stdio on pulsar and implement job stdio
2023-04-06 17:07:00 +02:00
test_pulsar_embedded.py
Make to_cwl compatible with pulsar
2025-05-12 10:54:56 +02:00
test_purge_datasets.py
Attempt to fix typing issues in integration tests.
2023-05-24 13:20:21 -04:00
test_quota.py
remove assert
2024-09-19 09:39:08 +02:00
test_recalculate_user_disk_usage.py
Fix new linting errors from flake8 6.1.0
2023-10-19 12:53:59 +01:00
test_remote_files_histories.py
Update to black 2024 stable style
2024-01-30 18:09:51 +00:00
test_remote_files_posix.py
Type annotation fixes for mypy 1.16.0
2025-06-10 02:22:18 +01:00
test_remote_files.py
Handle directories with percents in export_remote.xml.
2025-03-20 16:25:09 -04:00
test_repository_operations.py
Remove transaction helper from test.integration
2025-01-23 11:39:24 -05:00
test_resolvers.py
Update to black 2024 stable style
2024-01-30 18:09:51 +00:00
test_save_job_id_on_datasets.py
Removed deprecated `current` attribute of scoped_session
2025-02-21 09:29:41 +00:00
test_scripts_pgcleanup.py
Code cleanups from pyupgrade
2025-07-31 11:17:22 +01:00
test_scripts.py
Format code with black 25.1.0
2025-02-16 18:07:51 +00:00
test_shed_tool_tests.py
Update to black 2024 stable style
2024-01-30 18:09:51 +00:00
test_storage_cleaner.py
Code cleanups from pyupgrade
2025-07-31 11:17:22 +01:00
test_structured_dataset.py
Fix new UP031 errors from ruff 0.4.2
2024-04-29 00:09:38 +01:00
test_tool_data_bundles.py
Push extra files from object store cache to object store
2023-08-26 08:30:16 +02:00
test_tool_data_delete.py
Send reload message after data bundle import is complete
2023-09-03 18:24:28 +02:00
test_tool_submission_errors.py
Serialize message exceptions on execution error
2025-01-30 09:43:55 +01:00
test_upload_configuration_options.py
Tests for preserving column definitions in different metadata collection strategies.
2025-08-14 09:57:45 -04:00
test_user_defined_tool_job_conf.py
Add test for proposed prod-like deployment
2025-09-21 17:03:17 +02:00
test_user_preferences.py
Add first user data access tests
2024-06-10 15:48:10 -04:00
test_users.py
Code cleanups from pyupgrade
2025-07-31 11:17:22 +01:00
test_vault_extra_prefs.py
Merge branch 'release_24.1' into release_24.2
2025-02-16 17:26:50 +00:00
test_vault_file_source.py
Add first user data access tests
2024-06-10 15:48:10 -04:00
test_web_framework_config.py
Allow CORS requests to api/workflow_landings
2024-10-10 09:40:28 +02:00
test_webdav.py
Restore original filename for file_source_conf_webdav.yml
2023-06-14 19:27:31 +05:30
test_work_queue_put_failure.py
use history_id fixture instead of instance variable with the same name
2022-11-23 01:19:59 +00:00
test_workflow_handler_configuration.py
Type annotation improvements
2025-02-21 15:46:14 +00:00
test_workflow_invocation.py
Add test for keeping picked dataset's extension in place
2024-09-10 18:50:12 +02:00
test_workflow_refactoring.py
Code cleanups from pyupgrade
2025-07-31 11:17:22 +01:00
test_workflow_scheduling_options.py
Merge branch 'release_23.2' into dev
2024-03-04 13:02:17 -05:00
test_workflow_sync.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_workflow_tasks.py
Code cleanups from pyupgrade
2025-07-31 11:17:22 +01:00
user_preferences_extra_conf.yml
Add integration tests for non-vault user preferences handling
2025-02-13 18:40:55 +01:00
workflow_handler_configuration_job_conf.xml
…