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26 lines
977 B
Plaintext
26 lines
977 B
Plaintext
#This is a sample file distributed with Galaxy that enables tools
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#to use a directory of SRMA indexed sequences data files. You will need
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#to create these data files and then create a srma_index.loc file
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#similar to this one (store it in this directory) that points to
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#the directories in which those files are stored. The srma_index.loc
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#file has this format (white space is the TAB character):
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#
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#<build> <fasta_file>
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#
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#So, for example, if you had hg18 indexed and stored in
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#/depot/data2/galaxy/srma/hg18/,
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#then the srma_index.loc entry would look like this:
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#
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#hg18 /depot/data2/galaxy/srma/hg18/hg18.fa
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#
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#and your /depot/data2/galaxy/srma/hg18/ directory
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#would contain the following three files:
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#hg18.fa
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#hg18.dict
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#hg18.fa.fai
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#
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#The dictionary file for each reference (ex. hg18.dict) must be
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#created via Picard (http://picard.sourceforge.net). Note that
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#the dict file does not have the .fa extension although the
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#path list in the loc file does include it.
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