Kanwei Li a1f9e6a572 Support for VCFv4.0 and misc VCF fixes [Brad Chapman] ...

- Support for VCFv4.0, which should be identical to 3.3 support
- Correctly handle chromosome references when they start with 'chr' (instead of just numbers)
- Handle extra empty tabs on the header line which are present in GATK produced VCF and confuse the determination of how many sample states should be parsed.

2010-08-03 10:43:32 -04:00

..

__init__.py

Add a new FASTQ tool suite. Four FASTQ variants are supported: sanger, illumina, solexa and solid.

2010-02-23 16:48:07 -05:00

fasta.py

Change color space FASTA file type from fastqsolid to fastqcssanger.

2010-03-02 10:47:23 -05:00

fastq.py

Allow FASTQ Groomer/parser to work on tab-delimited decimal scores.

2010-05-24 15:33:55 -04:00

sequence.py

Add a new FASTQ tool suite. Four FASTQ variants are supported: sanger, illumina, solexa and solid.

2010-02-23 16:48:07 -05:00

transform.py

Add ability for reverse complement in e.g. FASTQ Manipulation tool to handle ambiguity codes.

2010-03-29 14:54:23 -04:00

vcf.py

Support for VCFv4.0 and misc VCF fixes [Brad Chapman]

2010-08-03 10:43:32 -04:00