galaxy/test/unit/config/test_path_graph.py

import pytest

from galaxy.config import BaseAppConfiguration
from galaxy.config.schema import AppSchema
from galaxy.exceptions import ConfigurationError

# When a config property 'foo' has an attribute 'path_resolves_to', that attribute is a reference to
# another property 'bar'. Together, these two properties form a graph where 'foo' and 'bar are
# vertices and the reference from 'foo' to 'bar' is a directed edge.
#
# A schema may have any number of such implicit graphs, each having one or more edges. All together,
# they should form a DAG (directed acyclic graph).
#
# These tests ensure that the graph is loaded correctly for a variety of valid configurations,
# whereas an invalid configuration raises an error.


def get_schema(app_mapping):
    return {"mapping": {"_": {"mapping": app_mapping}}}


def test_basecase(monkeypatch):
    # Check that a valid graph is loaded correctly (this graph has 2 components)
    mock_schema = {
        "component1_path0": {
            "type": "str",
            "default": "value0",
        },
        "component1_path1": {
            "type": "str",
            "default": "value1",
            "path_resolves_to": "component1_path0",
        },
        "component1_path2": {
            "type": "str",
            "default": "value2",
            "path_resolves_to": "component1_path1",
        },
        "component2_path0": {
            "type": "str",
            "default": "value3",
        },
        "component2_path1": {
            "type": "str",
            "default": "value4",
            "path_resolves_to": "component2_path0",
        },
    }
    monkeypatch.setattr(AppSchema, "_read_schema", lambda a, b: get_schema(mock_schema))
    monkeypatch.setattr(BaseAppConfiguration, "_load_schema", lambda a: AppSchema(None, "_"))

    config = BaseAppConfiguration()
    assert config.component1_path0 == "value0"
    assert config.component1_path1 == "value0/value1"
    assert config.component1_path2 == "value0/value1/value2"
    assert config.component2_path0 == "value3"
    assert config.component2_path1 == "value3/value4"


def test_resolves_to_invalid_property(monkeypatch):
    # 'path_resolves_to' should point to an existing property in the schema
    mock_schema = {
        "path0": {
            "type": "str",
            "default": "value0",
        },
        "path1": {
            "type": "str",
            "default": "value1",
            "path_resolves_to": "invalid",  # invalid
        },
    }
    monkeypatch.setattr(AppSchema, "_read_schema", lambda a, b: get_schema(mock_schema))

    with pytest.raises(ConfigurationError):
        AppSchema(None, "_").validate_path_resolution_graph()


def test_path_resolution_cycle(monkeypatch):
    # Must be a DAG, but this one has a cycle
    mock_schema = {
        "path0": {
            "type": "str",
            "default": "value0",
            "path_resolves_to": "path2",
        },
        "path1": {
            "type": "str",
            "default": "value1",
            "path_resolves_to": "path0",
        },
        "path2": {
            "type": "str",
            "default": "value2",
            "path_resolves_to": "path1",
        },
    }
    monkeypatch.setattr(AppSchema, "_read_schema", lambda a, b: get_schema(mock_schema))

    with pytest.raises(ConfigurationError):
        AppSchema(None, "_").validate_path_resolution_graph()


def test_path_invalid_type(monkeypatch):
    # Paths should be strings
    mock_schema = {
        "path0": {
            "type": "str",
            "default": "value0",
        },
        "path1": {
            "type": "float",  # invalid
            "default": "value1",
            "path_resolves_to": "path0",
        },
    }
    monkeypatch.setattr(AppSchema, "_read_schema", lambda a, b: get_schema(mock_schema))

    with pytest.raises(ConfigurationError):
        AppSchema(None, "_").validate_path_resolution_graph()


def test_resolves_to_invalid_type(monkeypatch):
    # Paths should be strings
    mock_schema = {
        "path0": {
            "type": "int",  # invalid
            "default": "value0",
        },
        "path1": {
            "type": "str",
            "default": "value1",
            "path_resolves_to": "path0",
        },
    }
    monkeypatch.setattr(AppSchema, "_read_schema", lambda a, b: get_schema(mock_schema))

    with pytest.raises(ConfigurationError):
        AppSchema(None, "_").validate_path_resolution_graph()


def test_resolves_with_empty_component(monkeypatch):
    # A path can be None (root path is never None; may be asigned elsewhere)
    mock_schema = {
        "path0": {
            "type": "str",
            "default": "value0",
        },
        "path1": {
            "type": "str",
            "path_resolves_to": "path0",
        },
        "path2": {
            "type": "str",
            "default": "value2",
            "path_resolves_to": "path1",
        },
    }
    monkeypatch.setattr(AppSchema, "_read_schema", lambda a, b: get_schema(mock_schema))
    monkeypatch.setattr(BaseAppConfiguration, "_load_schema", lambda a: AppSchema(None, "_"))

    config = BaseAppConfiguration()
    assert config.path0 == "value0"
    assert config.path1 == "value0"
    assert config.path2 == "value0/value2"