mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-10-24 12:13:33 +08:00
Nicola Soranzo
a353b2e88f
using: ``` autopep8 -i -r --exclude $(sed -e 's|^|./|' -e 's|/$||' .ci/flake8_blacklist.txt | paste -sd,) --select E127 . ```
125 lines
6.7 KiB
Python
125 lines
6.7 KiB
Python
import logging
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import time
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from shed_functional.base.twilltestcase import common, ShedTwillTestCase
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log = logging.getLogger(__name__)
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repository_name = 'filtering_1410'
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repository_description = "Galaxy's filtering tool"
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repository_long_description = "Long description of Galaxy's filtering repository"
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category_name = 'Test 1410 - Galaxy Update Manager'
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category_description = 'Functional test suite to test the update manager.'
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'''
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1. Create and populate the filtering_1410 repository.
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2. Install filtering_1410 to Galaxy.
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3. Upload a readme file.
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4. Verify that the browse page now shows an update available.
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'''
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class TestUpdateManager(ShedTwillTestCase):
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'''Test the Galaxy update manager.'''
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def test_0000_initiate_users(self):
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"""Create necessary user accounts and login as an admin user."""
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"""
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Create all the user accounts that are needed for this test script to run independently of other tests.
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Previously created accounts will not be re-created.
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"""
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self.login(email=common.test_user_1_email, username=common.test_user_1_name)
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test_user_1 = self.test_db_util.get_user(common.test_user_1_email)
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assert test_user_1 is not None, 'Problem retrieving user with email %s from the database' % common.test_user_1_email
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self.test_db_util.get_private_role(test_user_1)
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self.login(email=common.admin_email, username=common.admin_username)
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admin_user = self.test_db_util.get_user(common.admin_email)
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assert admin_user is not None, 'Problem retrieving user with email %s from the database' % common.admin_email
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self.test_db_util.get_private_role(admin_user)
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self.galaxy_login(email=common.admin_email, username=common.admin_username)
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galaxy_admin_user = self.test_db_util.get_galaxy_user(common.admin_email)
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assert galaxy_admin_user is not None, 'Problem retrieving user with email %s from the database' % common.admin_email
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self.test_db_util.get_galaxy_private_role(galaxy_admin_user)
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def test_0005_create_filtering_repository(self):
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'''Create and populate the filtering_1410 repository.'''
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'''
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We are at step 1 - Create and populate the filtering_1410 repository.
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Create filtering_1410 and upload the tool tarball to it.
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'''
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self.login(email=common.admin_email, username=common.admin_username)
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category = self.create_category(name=category_name, description=category_description)
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self.login(email=common.test_user_1_email, username=common.test_user_1_name)
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repository = self.get_or_create_repository(name=repository_name,
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description=repository_description,
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long_description=repository_long_description,
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owner=common.test_user_1_name,
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category_id=self.security.encode_id(category.id))
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self.upload_file(repository,
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filename='filtering/filtering_1.1.0.tar',
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filepath=None,
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valid_tools_only=True,
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uncompress_file=True,
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remove_repo_files_not_in_tar=True,
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commit_message="Uploaded filtering 1.1.0",
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strings_displayed=[],
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strings_not_displayed=[])
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def test_0010_install_filtering_repository(self):
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'''Install the filtering_1410 repository.'''
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'''
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We are at step 2 - Install filtering_1410 to Galaxy.
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Install the filtering repository to Galaxy.
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'''
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self.galaxy_login(email=common.admin_email, username=common.admin_username)
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self.install_repository('filtering_1410',
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common.test_user_1_name,
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category_name,
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new_tool_panel_section_label='test_1410')
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installed_repository = self.test_db_util.get_installed_repository_by_name_owner('filtering_1410', common.test_user_1_name)
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strings_displayed = ['filtering_1410',
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"Galaxy's filtering tool",
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'user1',
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self.url.replace('http://', ''),
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installed_repository.installed_changeset_revision]
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self.display_galaxy_browse_repositories_page(strings_displayed=strings_displayed)
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strings_displayed.extend(['Installed tool shed repository', 'Valid tools', 'Filter1'])
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self.display_installed_repository_manage_page(installed_repository, strings_displayed=strings_displayed)
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self.verify_tool_metadata_for_installed_repository(installed_repository)
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def test_0015_upload_readme_file(self):
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'''Upload readme.txt to filtering_1410.'''
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'''
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We are at step 3 - Upload a readme file.
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Upload readme.txt. This will have the effect of making the installed changeset revision not be the most recent downloadable revision,
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but without generating a second downloadable revision. Then sleep for 3 seconds to make sure the update manager picks up the new
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revision.
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'''
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self.login(email=common.test_user_1_email, username=common.test_user_1_name)
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repository = self.test_db_util.get_repository_by_name_and_owner(repository_name, common.test_user_1_name)
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self.upload_file(repository,
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filename='readme.txt',
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filepath=None,
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valid_tools_only=True,
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uncompress_file=True,
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remove_repo_files_not_in_tar=False,
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commit_message="Uploaded readme.txt",
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strings_displayed=[],
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strings_not_displayed=[])
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def test_0020_check_for_displayed_update(self):
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'''Browse installed repositories and verify update.'''
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'''
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We are at step 4 - Verify that the browse page now shows an update available.
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The browse page should now show filtering_1410 as installed, but with a yellow box indicating that there is an update available.
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'''
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# Wait 3 seconds, just to be sure we're past hours_between_check.
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time.sleep(3)
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self.galaxy_login(email=common.admin_email, username=common.admin_username)
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self.update_tool_shed_status()
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ok_title = r'title=\"Updates are available in the Tool Shed for this revision\"'
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updates_icon = '/static/images/icon_warning_sml.gif'
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strings_displayed = [ok_title, updates_icon]
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self.display_galaxy_browse_repositories_page(strings_displayed=strings_displayed)
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