mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Nicola Soranzo
21b44bf348
using the following command: ``` autopep8 -i -r --exclude $(sed -e 's|^|./|' -e 's|/$||' .ci/flake8_blacklist.txt | paste -sd,) --select E201,E202 . ```
47 lines
2.2 KiB
Python
47 lines
2.2 KiB
Python
#!/usr/bin/env python
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"""
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Import the contents of a repository capsule exported from a Tool Shed into another Tool Shed. For each exported repository
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archive contained in the capsule, inspect the Tool Shed to see if that repository already exists or if the current user is
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authorized to create the repository. If repository dependencies are included in the capsule, repositories may have various
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owners. We will keep repositories associated with owners, so we need to restrict created repositories to those the current
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user can create. If the current user is an admin or a member of the IUC, all repositories will be created no matter the owner.
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Otherwise, only repositories whose associated owner is the current user will be created.
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Repositories are also associated with 1 or more categories in the Tool Shed from which the capsule was exported. If any of
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these categories are not contained in the Tool Shed to which the capsule is being imported, they will NOT be created by this
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method (they'll have to be created manually, which can be done after the import).
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Here is a working example of how to use this script to install a repository from the test tool shed.
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./import_capsule.py -a <api key> -u http://localhost:9009 -c capsule_localhost_colon_9009_filter_test1_8923f52d5c6d.tar.gz
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"""
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import argparse
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import logging
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import sys
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from common import submit
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log = logging.getLogger(__name__)
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def main(options):
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api_key = options.api
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base_tool_shed_url = options.tool_shed_url.rstrip('/')
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data = {}
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data['tool_shed_url'] = options.tool_shed_url
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data['capsule_file_name'] = options.capsule_file_name
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url = '%s/api/repositories/new/import_capsule' % base_tool_shed_url
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try:
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submit(url, data, api_key)
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except Exception as e:
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log.exception(str(e))
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sys.exit(1)
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if __name__ == '__main__':
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parser = argparse.ArgumentParser(description='Import the contents of a repository capsule via the Tool Shed API.')
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parser.add_argument("-u", "--url", dest="tool_shed_url", required=True, help="Tool Shed URL")
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parser.add_argument("-a", "--api", dest="api", required=True, help="API Key")
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parser.add_argument("-c", "--capsule_file_name", required=True, help="Capsule file name.")
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options = parser.parse_args()
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main(options)
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