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171 lines
3.4 KiB
ReStructuredText
171 lines
3.4 KiB
ReStructuredText
~~~~~~~~~~~~~~~
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``filter-with``
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~~~~~~~~~~~~~~~
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:Description:
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If running behind a proxy server and Galaxy is served from a
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subdirectory, enable the proxy-prefix filter and set the prefix in
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the [filter:proxy-prefix] section above.
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:Default: ``proxy-prefix``
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:Type: str
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~~~~~~~~~~~~~~~
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``cookie_path``
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~~~~~~~~~~~~~~~
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:Description:
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If proxy-prefix is enabled and you're running more than one Galaxy
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instance behind one hostname, you will want to set this to the
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same path as the prefix in the filter above. This value becomes
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the "path" attribute set in the cookie so the cookies from each
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instance will not clobber each other.
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:Default: ``None``
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:Type: str
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~~~~~~~~~~~~~
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``log_level``
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~~~~~~~~~~~~~
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:Description:
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Verbosity of console log messages. Acceptable values can be found
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here: https://docs.python.org/2/library/logging.html#logging-
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levels
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:Default: ``DEBUG``
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:Type: str
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~~~~~~~~~~~~~~~~~~~~~~~
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``database_connection``
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~~~~~~~~~~~~~~~~~~~~~~~
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:Description:
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Database connection Galaxy reports are intended for production
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Galaxy instances, so sqlite (and the default value below) is not
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supported. An SQLAlchemy connection string should be used specify
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an external database.
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:Default: ``sqlite:///./database/universe.sqlite?isolation_level=IMMEDIATE``
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:Type: str
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~~~~~~~~~~~~~
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``file_path``
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~~~~~~~~~~~~~
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:Description:
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Where dataset files are saved Temporary storage for additional
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datasets, this should be shared through the cluster
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:Default: ``database/files``
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:Type: str
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~~~~~~~~~~~~~~~~~
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``new_file_path``
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~~~~~~~~~~~~~~~~~
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:Description:
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Where dataset files are saved Temporary storage for additional
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datasets, this should be shared through the cluster
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:Default: ``database/tmp``
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:Type: str
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~~~~~~~~~~~~~~~~~~~~~~~
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``template_cache_path``
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~~~~~~~~~~~~~~~~~~~~~~~
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:Description:
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Mako templates are compiled as needed and cached for reuse, this
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directory is used for the cache
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:Default: ``database/compiled_templates/reports``
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:Type: str
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~~~~~~~~~
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``debug``
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~~~~~~~~~
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:Description:
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Configuration for debugging middleware
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:Default: ``false``
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:Type: bool
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~~~~~~~~~~~~
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``use_lint``
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~~~~~~~~~~~~
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:Description:
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Check for WSGI compliance.
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:Default: ``false``
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:Type: bool
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~~~~~~~~~~~~~~~~~~~
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``use_interactive``
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~~~~~~~~~~~~~~~~~~~
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:Description:
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NEVER enable this on a public site (even test or QA)
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:Default: ``true``
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:Type: bool
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~~~~~~~~~~~~~~~~~
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``use_heartbeat``
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~~~~~~~~~~~~~~~~~
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:Description:
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Write thread status periodically to 'heartbeat.log' (careful, uses
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disk space rapidly!)
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:Default: ``true``
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:Type: bool
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~~~~~~~~~~~~~~~
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``use_profile``
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~~~~~~~~~~~~~~~
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:Description:
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Profiling middleware (cProfile based)
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:Default: ``true``
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:Type: bool
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~~~~~~~~~~~~~~~
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``smtp_server``
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~~~~~~~~~~~~~~~
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:Description:
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Mail
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:Default: ``yourserver@yourfacility.edu``
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:Type: str
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~~~~~~~~~~~~~~~~~~
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``error_email_to``
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~~~~~~~~~~~~~~~~~~
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:Description:
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Mail
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:Default: ``your_bugs@bx.psu.edu``
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:Type: str
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~~~~~~~~~~~~~~~~~~~~
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``enable_beta_gdpr``
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~~~~~~~~~~~~~~~~~~~~
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:Description:
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Enables GDPR Compliance mode. This makes several changes to the
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way Galaxy logs and exposes data externally such as removing
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emails/usernames from logs and bug reports. You are responsible
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for removing personal data from backups. Please read the GDPR
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section under the special topics area of the admin documentation.
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:Default: ``false``
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:Type: bool
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