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https://github.com/galaxyproject/galaxy.git
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John Chilton
5979ac41c8
Implement API test for this and fixup test for previous commit related improved workflow run endpoint.
70 lines
2.4 KiB
XML
70 lines
2.4 KiB
XML
<tool id="collection_two_paired" name="collection_two_paired" version="0.1.0">
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<command>
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#if $kind.collection_type == "paired"
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cat $kind.f1.forward $kind.f1['reverse'] >> $out1;
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cat $kind.f2.forward $kind.f2['reverse'] >> $out1;
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#else
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#for $i, $_ in enumerate($kind.f1):
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cat $kind.f1[$i] $kind.f2[$i] >> $out1;
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#end for
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#end if
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</command>
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<inputs>
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<conditional name="kind">
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<param type="select" name="collection_type">
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<option value="paired">Paired Datasets</option>
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<option value="list">List of Datasets</option>
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</param>
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<when value="paired">
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<param name="f1" type="data_collection" collection_type="paired" label="F1" />
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<param name="f2" type="data_collection" collection_type="paired" label="F2" />
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</when>
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<when value="list">
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<param name="f1" type="data_collection" collection_type="list" label="F1" />
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<param name="f2" type="data_collection" collection_type="list" label="F2" />
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</when>
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</conditional>
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</inputs>
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<outputs>
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<data format="txt" name="out1" />
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</outputs>
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<tests>
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<test>
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<conditional name="kind">
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<param name="collection_type" value="paired" />
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<param name="f1">
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<collection type="paired">
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<element name="forward" value="simple_line.txt" />
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<element name="reverse" value="simple_line_alternative.txt" />
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</collection>
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</param>
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<param name="f2">
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<collection type="paired">
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<element name="forward" value="simple_line.txt" />
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<element name="reverse" value="simple_line_alternative.txt" />
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</collection>
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</param>
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</conditional>
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<output name="out1" file="simple_lines_interleaved.txt"/>
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</test>
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<test>
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<conditional name="kind">
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<param name="collection_type" value="list" />
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<param name="f1">
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<collection type="list">
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<element name="l11" value="simple_line.txt" />
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<element name="l12" value="simple_line.txt" />
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</collection>
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</param>
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<param name="f2">
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<collection type="list">
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<element name="l21" value="simple_line_alternative.txt" />
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<element name="l22" value="simple_line_alternative.txt" />
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</collection>
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</param>
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</conditional>
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<output name="out1" file="simple_lines_interleaved.txt"/>
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</test>
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</tests>
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</tool>
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