galaxy

api

fix common API scripts so they dont fail when response has no url param

2015-06-15 16:12:21 -04:00

cleanup_datasets

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

data_libraries

Rename universe_wsgi.ini -> galaxy.ini everywhere.

2014-09-15 16:43:51 -04:00

loc_files

Convert everything from elementtree to stdlib xml module.

2015-01-29 16:10:56 -05:00

metagenomics

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

microbes

Convert everything from elementtree to stdlib xml module.

2015-01-29 16:10:56 -05:00

migrate_tools

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

others

Rename universe_wsgi.ini -> galaxy.ini everywhere.

2014-09-15 16:43:51 -04:00

scramble

Fix path insertion vs appending of <galaxy>/lib for all scripts.

2015-02-12 10:34:51 -05:00

taxonomy

Tweaks to taxonomy tools

2010-11-15 15:04:59 -05:00

tool_shed

expose searching full TS toolset over a separate index

2015-06-19 16:24:27 -04:00

tools

Migrate 22 tools from the distribution to the tool shed.

2014-05-19 13:01:46 -04:00

__init__.py

Adding db_shell.py that can be used to simplify writing command line

2012-03-05 12:11:53 -06:00

bootstrap_history.py

Add PR7 to release notes (caught by @bgruening).

2015-05-12 12:15:56 -04:00

build_toolbox.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

build_universe_config.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

check_eggs.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

check_galaxy.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

check_python.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

common_startup.sh

Ensure the correct default Galaxy config file is found in common_startup.sh, it

2015-02-12 11:47:58 -05:00

create_db.py

Rename universe_wsgi.ini -> galaxy.ini everywhere.

2014-09-15 16:43:51 -04:00

db_shell.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

dist-scramble.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

drmaa_external_killer.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

drmaa_external_runner.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

edam_mapping.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

egg_packager_template.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

external_chown_script.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

extract_dataset_part.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

extract_toolbox_sections.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

fetch_eggs.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

functional_tests.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

get_platforms.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

helper.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

make_egg_packager.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

manage_db.py

Add all the necessary dependency requires. Note to self: fix the egg dependency resolution bug so we don't have to dot his.

2015-02-14 10:35:42 -05:00

manage_tools.py

Add all the necessary dependency requires. Note to self: fix the egg dependency resolution bug so we don't have to dot his.

2015-02-14 10:35:42 -05:00

nosetests.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

paster.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

rst2html.py

Cleaning up modules. Still a few stragglers that can't be easily eggified.

2006-11-15 18:27:21 +00:00

run_selenium_tests.sh

Adding workflow tests using Selenium. These actually drive the web browser to test the Javascript UI effectively. Currently can't run under buildbot.

2009-03-27 18:55:00 -04:00

runtime_stats.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

scramble.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

set_dataset_sizes.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

set_metadata.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

set_user_disk_usage.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

summarize_timings.py

Workflow scaling test infrastructure.

2015-03-25 14:54:48 -04:00

sync_reports_config.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

test_dist_egg.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

transfer.py

Rename universe_wsgi.ini -> galaxy.ini everywhere.

2014-09-15 16:43:51 -04:00

update_shed_config_path.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00