John Chilton 0fe13b7e5a Seperate tool and job script standard I/O. ...

This should allow Galaxy to reason about what the tool reports vs. what dependency resolution and metadata reports, allow us to enable logging during metadata collection, and allow us to reason about the tool's I/O from inside the job script during cleanup/metadata collection at the end.

2019-03-04 15:39:07 -05:00

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chained_dyndest_rules

Added integration test for rules_module overrides

2018-11-16 12:27:32 +05:30

delay_rules

Integration test for job recovery (before and after handler has picked it up).

2018-08-21 15:17:12 -04:00

objectstore_selection_rules

Allow configuring object stores on a per-job-destination basis.

2018-08-06 11:29:08 -04:00

resubmission_rules

Test resubmit for completely dynamic JobDestination structures.

2017-12-06 10:25:29 -05:00

__init__.py

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chained_dyndest_job_conf.xml

Added integration test for rules_module overrides

2018-11-16 12:27:32 +05:30

delay_job_conf.xml

Integration test for job recovery (before and after handler has picked it up).

2018-08-21 15:17:12 -04:00

dockerized_job_conf.xml

Dockerized job integration testing.

2018-01-09 09:30:15 -05:00

embedded_pulsar_job_conf.xml

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handler_template_job_conf.xml

Integration tests for handler assignment methods

2019-01-04 16:46:29 -05:00

io_injection_job_conf.xml

Seperate tool and job script standard I/O.

2019-03-04 15:39:07 -05:00

objectstore_selection_job_conf.xml

Allow configuring object stores on a per-job-destination basis.

2018-08-06 11:29:08 -04:00

objectstore_selection_job_resource_parameters_conf.xml

Allow configuring object stores on a per-job-destination basis.

2018-08-06 11:29:08 -04:00

resubmission_default_job_conf.xml

Implement a Galaxy config option for default job re-submission conditions.

2017-01-04 16:11:56 -05:00

resubmission_dynamic_job_conf.xml

Test resubmit for completely dynamic JobDestination structures.

2017-12-06 10:25:29 -05:00

resubmission_job_conf.xml

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resubmission_job_resource_parameters_conf.xml

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resubmission_pulsar_job_conf.xml

Fixes for Pulsar error handling.

2018-12-21 11:16:38 -05:00

resubmission_runners.py

Implement a Galaxy config option for default job re-submission conditions.

2017-01-04 16:11:56 -05:00

resubmission_small_memory_job_conf.xml

Tool-centric annotation of out of memory errors.

2017-12-22 09:08:18 -05:00

resubmission_small_memory_resubmission_to_large_job_conf.xml

Tool-centric annotation of out of memory errors.

2017-12-22 09:08:18 -05:00

resubmission_tool_detected_always_error_job_conf.xml

Fix resubmission on tool error detection.

2018-11-23 14:32:04 +01:00

resubmission_tool_detected_resubmit_job_conf.xml

Fix resubmission on tool error detection.

2018-11-23 14:32:04 +01:00

sets_tmp_dir_expression_job_conf.xml

Improved home and temp directory handling.

2018-01-09 09:30:16 -05:00

sets_tmp_dir_to_true_job_conf.xml

Improved home and temp directory handling.

2018-01-09 09:30:16 -05:00

simple_job_conf.xml

Improved home and temp directory handling.

2018-01-09 09:30:16 -05:00

singularity_job_conf.xml

Add integration test for singularity resolution

2019-01-06 15:01:31 +01:00

test_chained_dynamic_destinations.py

Update test/integration/test_chained_dynamic_destinations.py

2018-11-16 17:12:45 +05:30

test_cli_runners.py

Share ssh key generation across tests

2018-10-14 18:08:17 +02:00

test_config_options_users.py

Tweak exposing user attributes to use an include list instead of exclude list.

2017-07-05 07:04:20 -04:00

test_containerized_jobs.py

Don't use skip_unless_docker decorator

2019-03-02 12:19:14 +01:00

test_data_manager_table_reload.py

py3: fix installing and running data managers

2018-08-14 14:56:06 +02:00

test_datatype_upload.py

Fix test logic

2018-10-30 09:27:25 +01:00

test_handler_assignment_methods.py

Integration tests for handler assignment methods

2019-01-04 16:46:29 -05:00

test_job_environments.py

Seperate tool and job script standard I/O.

2019-03-04 15:39:07 -05:00

test_job_recovery.py

Test cancelling jobs, running mulled containers on kubernetes

2019-02-19 13:22:10 +01:00

test_job_resubmission.py

Added test for pulsar resubmission

2018-11-28 22:41:38 +05:30

test_kubernetes_runner.py

Add test for tool using python dependencies

2019-02-19 20:17:16 +01:00

test_local_job_cancellation.py

Update to flake8-import-order 0.16

2017-12-01 11:09:57 +00:00

test_mules_as_job_handlers.py

Do test mules on Jenkins, I don't see why this shouldn't work

2018-08-14 14:56:07 +02:00

test_objectstore_jobs.py

Integration test for the interaction of nested object stores and jobs.

2018-07-27 09:16:05 -04:00

test_objectstore_selection.py

Allow configuring object stores on a per-job-destination basis.

2018-08-06 11:29:08 -04:00

test_pulsar_embedded.py

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test_resolvers.py

Add integration test for un/install with resolver_type

2019-01-06 15:01:31 +01:00

test_scripts.py

Integration tests for handler assignment methods

2019-01-04 16:46:29 -05:00

test_shed_tool_tests.py

Integration test case for running tool tests against shed installed tools.

2018-03-06 20:07:52 -05:00

test_upload_configuration_options.py

Directory datatype for Galaxy.

2018-10-24 09:39:06 -04:00

test_workflow_handler_configuration.py

Update to flake8-import-order 0.16

2017-12-01 11:09:57 +00:00

test_workflow_scheduling_options.py

Update to flake8-import-order 0.16

2017-12-01 11:09:57 +00:00

test_workflow_sync.py

Path-aware workflows.

2018-11-20 15:49:51 +01:00

tool_sheds_conf.xml

py3: fix installing and running data managers

2018-08-14 14:56:06 +02:00

uses_shed.py

Allow setting CONDA_PREFIX using GALAXY_TEST_CONDA_PREFIX in testing

2018-08-23 14:57:31 +02:00

workflow_handler_configuration_job_conf.xml

[17.01] Restrict workflow scheduling within a history to a fixed, random handler.

2017-03-29 22:20:41 -04:00

workflow_handler_configuration_workflow_scheduler_conf.xml

Allow explicit workflow scheduler handler process configuration.

2017-04-07 16:20:03 -04:00