mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-01 15:37:32 +08:00
James Taylor
3490 lines
356 KiB
Plaintext
3490 lines
356 KiB
Plaintext
##maf version=1
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a score=121487.000000
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s hg17.chr7 127471195 331 + 158628139 gtttgccatcttttgctgctctagggaatccagcagctgtcaccatgtaaacaagcccaggctagaccaGTTACCCTCATC---ATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagccactaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAAGAGATGCTATAAAGACCACCTTTTAAAACTTCCCAAATACTGCCACTGATGTCCTGATGGAGG-------------------------------------------------------TATGAA---------AACATCCACTAA
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s panTro1.chr6 129885076 331 + 161576975 gtttgccatcttttgctgctcttgggaatccagcagctgtcaccatgtaaacaagcccaggctagaccaGTTACCCTCATC---ATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagccactaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAAGAGATGCTATAAAGACCACCTTTTGAAACTTCCCAAATACTGCCACTGATGTCCTGATGGAGG-------------------------------------------------------TATGAA---------AACATCCACTAA
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i panTro1.chr6 C 0 C 0
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s rheMac2.chr3 165787989 330 + 196418989 gcttgccatcttttgatgctcttgggaatccagcagctgtcaccat-taaacaagcccaggctagaccaGTTACCCTCATC---ATCTTAGCTGATAGCCAGCCAGCCACCATAGGCAtgagtcaggccatagtgctggacccacagaattatgagctaaataagtagtgttgggttaagtcactaagttttaggcatagtgtgttatgtagcTCACAAACATATAAGACTGTGTGTTTTTTGACTGGAGGAAGAGATGCCATAAAGACCACCTTTTGAAACTTCTCAAATACTGCCATTGATGTGCTGATGGAGG-------------------------------------------------------TATGAA---------AACATCCACTAA
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i rheMac2.chr3 C 0 C 0
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s rn3.chr4 56178191 282 + 187371129 CTTCACTCTCATTTGCTGTT----------------CTGTCACTATGGAGACAAACACAGGCTAGCCCAGTTACTATCTTGATCACAGCAGCTGT----CAGCTAGCTGCCACTCACAGGAATAAGGCCATACCATT-GATCCACTGAACCTTGATCTAGGAATTTGGC----------------------TGGGGCCAGTTTGCGGTGTCACTCATGA--CTCTAAGATTGTGTGTTTG----CTCCAGGAAGAGACGGCAAGAGGATTACCTTTAAAAGGTTCGG-AGTCTAGCTGTAGACAGCCCAATGGG---------------------------------------------------------TATAAC---------AATACTCACTAA
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i rn3.chr4 C 0 I 3727
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s mm7.chr6 28984529 357 + 149646834 CTCCACTCTCGTTTGCTGTT----------------CTGTCACCATGGAAACAAACG-AGGGTGGTCCAGTTACTATCTTG---ACTGCAGCTGG----CAGTCAGTTGCCACT--CAGGAATAAGGCTATGCCATT-GATCCACTGAACCGTGATCTGGAAACCTGGCTGTTGTTT-------CAAGCCTTGGGGCCAGTTTGCGGTGTTACTCATGA--CTCTAAGATCGTGTGCTTG----CTGCAGGAAGAGACAGCAAGGGGGTTACATTTAAAAAGCCCCC-AGTTTAGCTATAGGCAGGCCAACAGGTGTAAAAATACTCACTAGTAATGGGCTGAACTCATGGAGGTAGCATTAGTGAGACACTGTAACTGTTTTTTTAAAAATCACTAA
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i mm7.chr6 C 0 C 0
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e monDom2.scaffold_22 30245538 51850 - 46578359 I
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e echTel1.scaffold_309554 3896 34801 + 42008 I
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e dasNov1.scaffold_60130 12867 0 - 12883 I
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e loxAfr1.scaffold_2979 11430 3597 - 113413 I
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e canFam2.chr14 52842678 4750 - 63938239 I
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e bosTau2.scaffold741 358386 0 + 359342 I
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e oryCun1.scaffold_213837 7852 41067 + 53501 I
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a score=20323.000000
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s hg17.chr7 127471526 58 + 158628139 AATTTGTGGTTTATTCATTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGG
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s mm7.chr6 28984886 54 + 149646834 ----AACGTTTCATTGATTGCTCATCATTTAAAAAAAGAAATTCCTCAGTGGAAGAGG
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i mm7.chr6 C 0 I 5774
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s rheMac2.chr3 165788319 58 + 196418989 AATTTGTGGTTTATTTATTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGG
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i rheMac2.chr3 C 0 C 0
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s panTro1.chr6 129885407 58 + 161576975 AATTTGTGGTTTATTCGTTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGG
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i panTro1.chr6 C 0 C 0
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e monDom2.scaffold_22 30245538 51850 - 46578359 I
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e echTel1.scaffold_309554 3896 34801 + 42008 I
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e dasNov1.scaffold_60130 12867 0 - 12883 I
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e loxAfr1.scaffold_2979 11430 3597 - 113413 I
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e canFam2.chr14 52842678 4750 - 63938239 I
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e rn3.chr4 56178473 3727 + 187371129 I
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e bosTau2.scaffold741 358386 0 + 359342 I
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e oryCun1.scaffold_213837 7852 41067 + 53501 I
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a score=85620.000000
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s hg17.chr7 127471584 104 + 158628139 GAGATATTT-GGggaaatttt-gtatagactagctt--tcacgatgttagggaattattattgtgtgataatggtcttgcagttac-acagaaattcttcctta-ttttt
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s panTro1.chr6 129885465 104 + 161576975 GAGACATTT-GGggaaatttt-gtatagactagctt--tcacgatgttagggagttattattgtgtgataatggtcttgcagttac-acagaaattcttcctta-ttttt
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i panTro1.chr6 C 0 C 0
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s rheMac2.chr3 165788377 105 + 196418989 GAGATATTT-GGggaaatttg-gtatagactagctt--tcatgatgtaagggagttatttttgtgtgataatggccctacagttac-acagaaattcttccttatttttt
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i rheMac2.chr3 C 0 C 0
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s canFam2.chr14 52847428 108 - 63938239 gagatattt-gggggaatttgaatgtagtgttgctcttttgtgatgctaagaaattataattgtctgatgatagtctcgtggttatgggggaaatgcttcctta-ttttt
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i canFam2.chr14 I 4750 I 198
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s bosTau2.chr4 19312415 103 - 69556449 -agacattg-ggtaaaattcaaatgcagactagctc----atgatgttaaagaattactcttgtgtggtaatggtcttgtgatagagatagaaatgcttcctta-ttttt
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i bosTau2.chr4 M 120077 I 1
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s rn3.chr4 56182200 95 + 187371129 ----TATTTGGGGGAAATATG-ATGTGCA----CTT--CCATGATCTTAAAGAATTGCTACTGTTTGATAGTGATCTTATGGTTAA-ATAAAAAAAAT--CTTA-GTTGT
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i rn3.chr4 I 3727 C 0
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s dasNov1.scaffold_256527 298 94 + 1837 GAGACATTT-GGAGAAATTTG-----------Aatt--tcatgatgttaaggaattacttttgtatgatgatggtcttgtggctat-gtagaatttcttccgtg-tttta
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i dasNov1.scaffold_256527 n 0 C 0
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e monDom2.scaffold_22 30245538 51850 - 46578359 I
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e echTel1.scaffold_309554 3896 34801 + 42008 I
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e loxAfr1.scaffold_2979 11430 3597 - 113413 I
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e mm7.chr6 28984940 5774 + 149646834 I
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e oryCun1.scaffold_213837 7852 41067 + 53501 I
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a score=113319.000000
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s hg17.chr7 127471688 183 + 158628139 tgggaagcaccaaagta-------gggataaaatgtcatgatgtgtgcaatacactttaaaatgtttttgccaaaa----------taattaa-------------------------tgaagc--aaatatg---gaaaataataattattaaatctaggt-----gatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaatttttcattta--------------------------aaaa-
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s panTro1.chr6 129885569 183 + 161576975 tgggaaacaccaaagta-------gggataaaatgtcatgatgtgtgcaatacgctttaaaatatttttgccaaaa----------taattaa-------------------------tgaagc--aaatatg---gaaaataataattattaaatctaggt-----gatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaaattttcattta--------------------------aaaa-
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i panTro1.chr6 C 0 C 0
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s rheMac2.chr3 165788482 202 + 196418989 tgggaagcacaaaagta-------gggataaaatgtcatgatgtgtacaatatgctttaaaatatttttgccaaaa----------taattaa-------------------------tgaagc--aaatatg---gaaaataataactgttaaatctaggt-----gttgggtatattgcagttcattatgttattgcacacttttctgtgtgtttaaaattttcatttaaaaatatgttttaaaaatg-------aaaa-
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i rheMac2.chr3 C 0 C 0
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s rn3.chr4 56182295 194 + 187371129 TAGAAAATACTCAAATATTTAGGGGCGTGACAATGTCACAGTGTCTGCAATTTGCTTTAAAGATTTTT-----AAA----------TATTTAAAAAAGTTTTAATAATTTTGAAAAACTGAAGCTACACTATG---GGAAGTGGTAATTGTTACATATGGGT-----AATAAGTAT-----AATTCGTTATATTAT-------TTTTC------TTAGAATTTTTCATTTG--------------------------AAAA-
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i rn3.chr4 C 0 I 959
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s bosTau2.chr4 19312519 138 - 69556449 agataaacacttaagtattta---aggatgaaacgccctgatgtttgtaatttgctttagaatattttagccaaaa----------gaattaa-------------------------tgatgc--aaatatg--caaaaagagta--cgttaaacctaa-----------------------------------------------------atttgCGATTttcattta--------------------------aaaa-
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i bosTau2.chr4 I 1 I 19
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s canFam2.chr14 52847734 160 - 63938239 agacacaaactgaagtattta---aggatgaaatgtcatgatgtttgcaattggctttaaaatattttagccaaaa-----------agtaaa-------------------------tgaagc--AAATATG--GGAAGACAATAATCATTAAATCTAGGT-----GATGCATAC---------------------------TTTTCCATATGTTTGAAATTTTCATTTA--------------------------AAAA-
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i canFam2.chr14 I 198 I 225
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s dasNov1.scaffold_256527 393 232 + 1837 agacgcatgctgaagcatgta---aggataaaatgtcgtggtgtttgtaatttattctaaaacattttagccaaaaacaaataaataaataaa-------------------------tgaagc--aaatatgggggaaatgtttaattgttaaatctagatttaacacggtatataccgtgcttcattatactagtctctacttttccatgtgtttgaaattttCATTAAAATGTTTGTTTGTTGTCTGTTTTAATGAAAT
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i dasNov1.scaffold_256527 C 0 C 0
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e monDom2.scaffold_22 30245538 51850 - 46578359 I
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e echTel1.scaffold_309554 3896 34801 + 42008 I
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e loxAfr1.scaffold_2979 11430 3597 - 113413 I
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e mm7.chr6 28984940 5774 + 149646834 I
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e oryCun1.scaffold_213837 7852 41067 + 53501 I
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a score=24225.000000
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s hg17.chr7 127471871 39 + 158628139 actttgagctagacaccaggctatgagcta-ggagcatag
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s rheMac2.chr3 165788684 39 + 196418989 actttgagctagataccaggttatgagcta-ggagcatag
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i rheMac2.chr3 C 0 C 0
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s panTro1.chr6 129885752 39 + 161576975 actttgagctagacaccaggctatgagcta-ggagcatag
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i panTro1.chr6 C 0 C 0
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s bosTau2.chr4 19312676 39 - 69556449 tcttcgtgcaacgcacggggctatcaatgt-gggatacag
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i bosTau2.chr4 I 19 C 0
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s canFam2.chr14 52848119 39 - 63938239 ACATCAtgctagatcctggactatgagctg-ggtatatag
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i canFam2.chr14 I 225 C 0
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s dasNov1.scaffold_256527 625 40 + 1837 CCTTTGTGCTAGCCACTGGGATGAAAGCTAGGGAACACAG
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i dasNov1.scaffold_256527 C 0 C 0
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e monDom2.scaffold_22 30245538 51850 - 46578359 I
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e echTel1.scaffold_309554 3896 34801 + 42008 I
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e loxAfr1.scaffold_2979 11430 3597 - 113413 I
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e rn3.chr4 56182489 959 + 187371129 I
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e mm7.chr6 28984940 5774 + 149646834 I
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e oryCun1.scaffold_213837 7852 41067 + 53501 I
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a score=94204.000000
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s hg17.chr7 127471910 164 + 158628139 caatgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa-ctc-aaagaatgcacattctCTG-GGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACCTG-TGTGATCCTGGCTTTTCCTGTTCCCTCCG---CATCATCACTGCAGGTGTGTTTTCCCAAG
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s panTro1.chr6 129885791 164 + 161576975 caatgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa-ctc-aaagaatgcacattctCTG-GGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACATG-TGTGATCCTGGCTTTTCCTGTTCCCTCTG---CATCATCACTGCAGGTGTATTTTCCCAAG
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i panTro1.chr6 C 0 C 0
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s rheMac2.chr3 165788723 162 + 196418989 caatgaccaa----------------------------------------------------------------------------------------------atagacccctaccga-ctc-aaagaatgtacattctTTG-GGAAACATGTTTCCATCAGAAAATCTCAAATGCAATGTGACTGGGGTCTCCAGGACCTG-TGTGAGCCTGGCTTTTCCTGTTCCCTCCA---CATCATCACTGCAGGTGTATTTTCCC--G
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i rheMac2.chr3 C 0 C 0
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s mm7.chr6 28990714 161 + 149646834 caaaaaccaa------------------------------------------------------------------------------------------------aaaaACCTATAGC-CTC-ACAGGGTGGGTTGTCTTTG-AGGAACATGCATCCGCTAGAAAGTCCCAAGTACACTATGACAGTTG--CCCAGGCCCCGCCTTAAACCTGGTTTTCCTGGTTTCTTTCA---CATCATTACCACGAATATATTTCCTCAAG
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i mm7.chr6 I 5774 C 0
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s rn3.chr4 56183448 257 + 187371129 --ATGACCAATATACACTGTTTACATGTATAGCATTGTGAATGGAGACATAAAAAGATAATCTAGCTTTGTGCTAGGTAGGTGCTGAGCTCTTAACAGTGCTGGGCAGAAACCTATAAC-CTC-ACAGGGTGGGTTGTCTTTG-AGGAGCGTGCTAACCCTAGGAAGTCTCAAATACAATGTGATGGTTGCCCCCAGGCACCACCTTGAACCTGGTCTTCCTGGTTTCTTTCA---CACCATTACCACAAATACATTTTCTCAGG
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i rn3.chr4 I 959 C 0
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s bosTau2.chr4 19312715 168 - 69556449 atgtgaacaa---------------------------------------------------------------------------------------------aacggacccgtgtgggactcggcggagcacacagattttgcgggagCACGTTCCCGTTAGGAAGTCTCTGATGCAATACGACCGGTGCCTTCAGGACCTG-TG--AGGCTGACTTTCCTTA-CCCCTCCACACCATCATCAAGGCAGGTGTGATTTTCCAGG
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i bosTau2.chr4 C 0 I 12
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s canFam2.chr14 52848158 168 - 63938239 cagtgaacaa---------------------------------------------------------------------------------------------aacagagccctgcagt-cttgatggagcacacaacctttg-gggaaCATGTTTCCATAAGAAAGTCTCCAATGTGATCTGA-TGGTGCCGCCAGGACCTA-TGTCAGCCTACCGTTCCATGTCCCCTCCACACCATCATCACTGCAGGTGTGTTTTCCCACA
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i canFam2.chr14 C 0 C 0
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s dasNov1.scaffold_256527 665 121 + 1837 CAGTGAGCAA-----------------------------------------------------------------------------------------------CAGCCTGGCTCCGT-CC--GGGGGCCGCTCAGCAGCTC-GGGAGCGTGGAGACG---GGAAGTCTGTCACGCGATGCG-----------CTGGGCCCG------------CTGTTCCCGCCCCCCTCC---CCCC----------------TTTCCCAAG
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i dasNov1.scaffold_256527 C 0 C 0
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e monDom2.scaffold_22 30245538 51850 - 46578359 I
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e echTel1.scaffold_309554 3896 34801 + 42008 I
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e loxAfr1.scaffold_2979 11430 3597 - 113413 I
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e oryCun1.scaffold_213837 7852 41067 + 53501 I
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a score=97835.000000
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s hg17.chr7 127472074 184 + 158628139 TTTTAAA------CATTTACCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGT-ACATGAATATAACACATAACAAA-AATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaatttt-ccc-tgggcacccatgtgttcttggcactggaaaagtaccgggactgaaacagtt
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s panTro1.chr6 129885955 184 + 161576975 TTTTAAA------CATTTACCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGT-ACATGAATATAACACATAACAAA-AATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaatttt-tcc-tgggcacccatgtgttcttggcactggaaaagtaccgggactgaaacagtt
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i panTro1.chr6 C 0 C 0
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s rheMac2.chr3 165788885 184 + 196418989 TTTTAAA------CATTTACTCTCCCAGTAGCCTTGCATCTCGAGGAATCCCTGTATAGTGGT-ACATGAATATAACACATAACAAA-AATCATCTGTACGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaatttt-tcc-tgggcacccctgtgttcttggcactggaaaagtaccaggacttaaatagta
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i rheMac2.chr3 C 0 C 0
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s mm7.chr6 28990875 150 + 149646834 TTTAAAGAAAGTACCCCCTCCTTTCCAGT-GCCTCAAATCTAGAAGAATATTCATAGTGAAGT-GC------------------------ACAGCCGGGTGGTGCATGGTA-ATCTGGAAGTCACCTCTGCAAATCTT-TCC----------------TGTTGGTGCTGTGAAGGCACCAGGACTTCAAGAGTA
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i mm7.chr6 C 0 C 0
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s rn3.chr4 56183705 174 + 187371129 TTTAAAAGAAGT-CCCACTCCTTTCCAGT-GCCCTAGATCTAGAAGCACATTCATAATGATGT-ACAC-----TAACCC----------GACAGCTGTGTGGTATATGGTA-TCCCGGAAGTCACCTCAGCAAACCTT-TCCCGGGGAACCTACATGGTGTTGGTGCTGTGAAGGTACCAGGTTGTCAAGGGTA
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i rn3.chr4 C 0 C 0
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s canFam2.chr14 52848326 170 - 63938239 TTTTAAA------TATCTGC-TTCCCGGTGGCCTTGAGTCTAGAGGAGTCCCCCCACTATGGTGGCACTAATACTGAAGGTCAGAAATAATCAGTTCTGTGGTGCATGTTGCCCCTGAGGTTCTGTTCGGGAAACTTC-TTC-TGAGCAC----ATGCACCTGGCACTGCAAACGTACCAGGA-----------
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i canFam2.chr14 C 0 I 195
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s dasNov1.scaffold_256527 786 178 + 1837 TTTTAAA------AATTTACCTTCCCAGTGGCGGTGAATCCGGAGGAATACGGAAACTGGGGC-GCACTACCATGACACGTGTCAAA-AATCAGTTCCGTGGTCCGTGGAGGGCCTGGGGTTC------GAAAATCTTGTCC-CGAGCACCCCCGTGCGCCTGGCACCGCGACAGTGACAGGACTGAAGCGTG-
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i dasNov1.scaffold_256527 C 0 C 0
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e monDom2.scaffold_22 30245538 51850 - 46578359 I
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e echTel1.scaffold_309554 3896 34801 + 42008 I
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e loxAfr1.scaffold_2979 11430 3597 - 113413 I
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e bosTau2.chr4 19312883 12 - 69556449 I
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e oryCun1.scaffold_213837 7852 41067 + 53501 I
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a score=14531.000000
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s hg17.chr7 127472258 22 + 158628139 gatggccca-atccctgtcctct-
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s panTro1.chr6 129886139 22 + 161576975 gatggccca-atccctgtcctct-
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i panTro1.chr6 C 0 C 0
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s rheMac2.chr3 165789069 22 + 196418989 gatggccca-atccctgtcctct-
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i rheMac2.chr3 C 0 C 0
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s mm7.chr6 28991025 23 + 149646834 AATGGCAGAGGGCTCTGTTCTCT-
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i mm7.chr6 C 0 I 471
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s rn3.chr4 56183879 23 + 187371129 AATGGCAGAGGCCCCTGTTCTCT-
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i rn3.chr4 C 0 C 0
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s canFam2.chr14 52848691 22 - 63938239 GGAGACTTG-ATGCCTGCCTTCC-
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i canFam2.chr14 I 195 I 3
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s dasNov1.scaffold_256527 964 23 + 1837 GACGGCCAG-ACCTCTGCCCTCGG
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i dasNov1.scaffold_256527 C 0 C 0
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e monDom2.scaffold_22 30245538 51850 - 46578359 I
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e echTel1.scaffold_309554 3896 34801 + 42008 I
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e loxAfr1.scaffold_2979 11430 3597 - 113413 I
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e bosTau2.chr4 19312883 12 - 69556449 I
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e oryCun1.scaffold_213837 7852 41067 + 53501 I
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a score=182774.000000
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s hg17.chr7 127472280 401 + 158628139 taaaacctaagggaggagaTGGAAAG-GGGCACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTA---AGGATG--GAGAGGCCCTA-GTGGAATGGGGAGATTCTTCCGGGAGAAGCGATGGATGCACAGTTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCA------ATGTGC-AATGTATGTGTGTTCCCTGGTTcaagggctgg-gaactttctcta--aagggccaggtagaaaacattttaggctttctaagccaagg---caaaattgaggat-attacatgggtacttatacaacaagaataaacaatt---tacacaa-ttttttgttgacagaattcaaaa---ctttat----agacac---agaaatgcaaatttcctgt
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s panTro1.chr6 129886161 401 + 161576975 taaaacctaagggaggagaTGGAAAG-GGGCACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTA---AGGATG--GAGAGACCCTA-GTGGAATGGGGAGATTCTTCCGGGAGAAGCGATGGATGCGCAGTTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCA------ATGTGC-AATGTATGTGTGTTCCCTGGTTcaagggctgg-gaactttctcta--aagggccaggtagaaaacattttaggctttctaagccaagg---caaaattgaggat-attacatgggtacttatacaacaagaataaacaatt---tacacaa-ttttttgttgacagaattcaaaa---ctttat----agacac---agaaatgtaaatttcctgt
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i panTro1.chr6 C 0 C 0
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s rheMac2.chr3 165789091 401 + 196418989 taaaacctaatggaggagatggaATG-GGTCACCCAACCCGGACTGAGAGACAGGAATTAGCTGCAAGGGTAACCAGGACAAGCTTCTCTA---ATGATG--GAGAGACCCTA-GTGGAATGGGGAGATTCTTCTGGGAGAAGCGATGGATTCGTAGTTGGGCATCCCCACAGAGGGACTGGAAAGAAAAAAGACCTGGAGGAACCA------ATGTGC-AATGTATGTGTGTTTCCTGGTTcaagggctggcaaactttctcta--aagggccagatagaaaacattttaggctttgtaagccaagg---caaaatcgaggag-attacatgggtacttatacaacaagaataaacaatt---tccacaa--tttttattcacagaattcaaaa---ctttat----agacac---agaaatgtaaatttcctgt
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i rheMac2.chr3 C 0 C 0
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s rn3.chr4 56183902 317 + 187371129 ------------------------------------GTCCATAGTCAAAG------------------------------AAGCCTCTCAG---ATGGAG--AGCAGGGCCTATGCAAAAGAGGGGGCTTCTGTAGGCAGAAGGGATGGACTAGCCTCCGGACATAGCCATAGAGAGGCTGGCAGGACTGAGACCCAGGAGAAGCCAGCGCAGGTGTGCGGGCGTGTGTATATTTCATAGTTTGCAGGTTGG----------------------------CAAACAATTCCTGCTTTGCAGGCCAAGA---GGAAACTGAAGGTGACCCCGTGAGTGCTTAC---ACAAGAGAAAACAAG-------ACAA-TTTTTGGTTGACCAAATTCAGAA---CTTTATTTGAGGATGC---TAAAGTTTAAATTTCTTTT
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i rn3.chr4 C 0 I 329
|
|
s canFam2.chr14 52848716 380 - 63938239 TACAGCCTGTGGGCAGAGGTGGGAAGAGGTCACGCAAGCCAGTTGGAATGAGGGGAGTTGGCTGGAAAGGTGACCAGGACAAGCTACTTCAACCAGGAAG--AAGAGACCCCG-GTG----------------CTTGGAGAAGGCCTGATTGAGCAGTCCTGCATGCCCGCCCAC-GACTGGCAGGAATAAAGACCCAGAAGAGCTA------ACGTGC-AATGTA------TTTTCTAGTTCCAgggttggcaaactttctctct-aagggtgggatgataaacattttaggcttttcagaccaaga---ggcgacatcagag-ggtatgtaggt---------acaagagggaaaagttgcccccggaa-ttttttg--gataaaattcaaaa---ctttacttagggatgc---caaaatgtaaacttcatat
|
|
i canFam2.chr14 I 3 C 0
|
|
s dasNov1.scaffold_256527 987 414 + 1837 CTAAATCTCGCGGAGAAGGTGGAACA-GGTTACCCAAACCCGACCGAG-GAGGCGAGTTG---GAAACGGCGACTGGGACAAGCTCCCTCA---GAGACGGAGAGAGACCCCA-GTGGAAGGGGGGAGAGGCTCTTAGGGAAACGATGGGGGGACCCGCCCGCACCCGCACAGAGGCGCTGGCAGGCACAGCGGCCCCGAGGAGCCC------AGGAGC-AGGGC-TGTGT-TCCCCTGCATcaggggttggcaaactttttctgcaaagggccagatagtaaatattttaggctttgcaaaccaagaagtagaaagggaggcc-attatgtacgtatttatatagcaagagagaacattt---cccacaatttttttattgacagaatttaaaacttctttattgatgaacaccaaagaaacttgaatttcatat
|
|
i dasNov1.scaffold_256527 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_309554 3896 34801 + 42008 I
|
|
e loxAfr1.scaffold_2979 11430 3597 - 113413 I
|
|
e mm7.chr6 28991048 471 + 149646834 I
|
|
e bosTau2.chr4 19312883 12 - 69556449 I
|
|
e oryCun1.scaffold_213837 7852 41067 + 53501 I
|
|
|
|
a score=14948.000000
|
|
s hg17.chr7 127472681 34 + 158628139 aattttcccat---gagaactattcttcttttgtttt
|
|
s rheMac2.chr3 165789492 34 + 196418989 aattttcacat---aagaactattcttcttttgtttt
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129886562 34 + 161576975 aattttcccgt---gagaactattcttcttttgtttt
|
|
i panTro1.chr6 C 0 C 0
|
|
s canFam2.chr14 52849096 35 - 63938239 aatggtcatgt--ccataactattcttcttttatttt
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_256527 1401 32 + 1837 aattttcacatatcacgaagtatttttttttt-----
|
|
i dasNov1.scaffold_256527 C 0 n 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_309554 3896 34801 + 42008 I
|
|
e loxAfr1.scaffold_2979 11430 3597 - 113413 I
|
|
e rn3.chr4 56184219 329 + 187371129 I
|
|
e mm7.chr6 28991048 471 + 149646834 I
|
|
e bosTau2.chr4 19312883 12 - 69556449 I
|
|
e oryCun1.scaffold_213837 7852 41067 + 53501 I
|
|
|
|
a score=266560.000000
|
|
s hg17.chr7 127472715 1094 + 158628139 gttttgcgacAGGGTTGCGCtgatcctcccgcctcagtctccctaagtgctgagatgttgcaggaagtcagggaccccgaacagagagatcggctggagccgtggcagaggaacataaattttgaagatttcattttaatatggacacttatcagttcccaaataatacttttataattttttatgcctgtctttgctttaatctcttaatcctgttatcttcataagctaaggatgtacgtcacctcaggaccactgtgataattgtgttaactgtacagattgattgcaaaacatgtgtgtttgaacaatatgaaatcagtgcaccttgaaaaagagcagaataacagcaatttttagggaacaagggaagacaactataaggtctgactgcctgcggggtcgggcaaagggagccatatttttcttcttgcagagagcctataaatagacctgcaagtaggagagatattgctaatttcttttgctagcatggaatattaatattaacaccctgggaaaggaatgcattcctggggggaggtctataaatggccgctctgggaatgtctatcctacgcaatggagataaggactgagatacgccctggtctcctgcagtaccctcaggcttactagggtggtgaaaaactccgccctggtaaatttgtggtcagaccagttttctgctctcgaacactgttttctgttgtttaagatgtttatcaagacaatacgtgcaccgctgaacacagacccttatcagtagttctcctttttgccctttgaagcatgtgatctactccctgtt-ttacaccccctcaccttttgaaacccttaataaaaaacttgctggttt-gaggctcaggtgggcatcacagtact--------------------accgatatgtgatgtcacccccggcggcccagctgtaaaattcctctctttgtactctctctctttatttctcagccagctgacacttatggaaaatagaaagaacctacgttgaaatattgggggcaggttcccccaataTCTGGTGCCCAACGTGGGAtactgagattacaagcatgagccactgcatctggcctcttcttttg--att
|
|
s panTro1.chr6 129886596 1090 + 161576975 C-----CGACAGGGTTGCGCtgatcctcccgcctcagtctccctaagtgctgagatgttgcaggaagtcagggaccccgaacagagagatcggctggagccgtggcagaggaacataaattttgaagatttcattttaatatggacacttatcagttcccaaataatacttttataatttcttatgcctgtctttgctttaatctcttaatcctgttatcttcataagctgaggatgtacgtcacctcaggaccactgtgataattgtgttaactgtacaaattgattgcaaaacatgtgtgtttgaacaatatgaaatcagtgcgccttgaaaaagagcagaataacagcaatttttagggaacaagggaagacaactataaggtctgactgcctgtggggtcgggcaaaaagagccatatttttcttcttgcagagagcctataaatagacctgcaagtaggagagatatcgctaatttcttttgctagcaaggaatattaatattaacaccctgggaaaggaatgcattcctggggggaggtctataaatggccgctctgggaatgtctatcctatgcaatggagataaggactgagatacgccctggtctcctgcagtaccctcaggcttactagggtggtgaaaaactccgccctggtaaatttgtggtcagaccagttttctgctctcgaaccctgttttctgttgtttaagatgtttatcaagacaatacgtgcaccgctgaacatagacccttatcagtagttctcctttttgccctttgaagcatgtgatttactccctgtt-ttacaccctctcaccttttgaaacccttaataaaaaacttgctggttttgaggctcaggtgggcatcacagtact--------------------accgatatgtgatgtcacccccggcggcccagctgtaaaattcctctctttgtactctctctctttatttctcagccagctgacacttatggaaaatagaaagaacctacgttgaaatattgggggcaggttcccccaataTCTGGTGCCCAACGTGGGATACTGATTCTACAAGCATGAGCCACTGCATCTGGCCtcttcttttg--att
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165789526 1106 + 196418989 gttttGAGACAGGGCTGTGCtgatcctcccgcctcagactccctaagtgctgagatgttgcaggaagtcagggaccccaaacagagggactggctggagctgtggcagaggaacatgaattgtgacaatttctttttaatatggacatttgtcagttcccaaataatacttttataattttatatgcctgtctttactttaatctcttaatcctgttatcttcataagctgagaatgtacatcacctcaggaccactgtgataattgtgttttctgtataaattgattgtaaaaca--tgtgtttgaacaatatgaaatcagtgcaccttgaaacagaacagaataacagcaatttttagggaac-agagaagacaaccataaggtctgactgcctgcggggtcaggcaaaaagagtcatatttttcttcttgcagagagcctataagtggacgtgcaagtaggagagatatcaccaaattcttttcctagcaaggaatattaatattaataccccgggaaaggaatggattcctggggagagggctataaacggccgctctgggaatgtctgtcttatgcggttgagataaggactgagatatgctctggtctcctgcagtaccctcaggcttattagggtggggaaaaactctgccctggtaaatttgtggtcagactggttctctgctctccaacactgttttctgttgtttaagatgtttatcaagacaataca-----cgctgaacatagacccttatcagcaattctcctttttgccctttgaagtatgtgatctactccctgttcttagactccttccccttttgaaatccttaataaaaaacttgctggttt-gaggctcaggtgggcatcacagtcatcacaggcatcacagtcctggagtgatacttgatgtcaccccaagcagcccagctgtaaatt---cctctttgtactctttctctttatttctcagctggccaacacttatggaaaatagaaagaacctacattgaaatattgggggtgggttcccccaataTCTGGAGCCCAACGTGGaatactgagattacaagcatgagccactgcatccggcCtcttcttttgatatt
|
|
i rheMac2.chr3 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_309554 3896 34801 + 42008 I
|
|
e dasNov1.scaffold_256527 1433 0 + 1837 I
|
|
e loxAfr1.scaffold_2979 11430 3597 - 113413 I
|
|
e canFam2.chr14 52849131 0 - 63938239 C
|
|
e rn3.chr4 56184219 329 + 187371129 I
|
|
e mm7.chr6 28991048 471 + 149646834 I
|
|
e bosTau2.chr4 19312883 12 - 69556449 I
|
|
e oryCun1.scaffold_213837 7852 41067 + 53501 I
|
|
|
|
a score=34738.000000
|
|
s hg17.chr7 127473809 97 + 158628139 tttttttttcaaacttttacaaatgtagaaaccattcttagcttttgggcattaccaaacccggcagtgg-caggctcggttcaccaacgtcatttgc
|
|
s rheMac2.chr3 165790632 97 + 196418989 tttttttttcaaacttttacaaatgtaaaaaccattctcagcttctgggcagtagcaaacccggcagtgg-caggtttggttcCCCGACATCATTTGC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129887686 97 + 161576975 tttttttttcaaacttttacaaatgtagaaaccattcttagcttttgggcattaccaaacccggcagtgg-AAGGCTCGGTTCACCAACATCATTTGC
|
|
i panTro1.chr6 C 0 C 0
|
|
s canFam2.chr14 52849131 97 - 63938239 tatatttttcaactctttaaaaatgcaaaaaccattcctagc-tcggggccatggtggtcctggtggtggtcggatttggctcacccacataacttgc
|
|
i canFam2.chr14 C 0 I 198
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_309554 3896 34801 + 42008 I
|
|
e dasNov1.scaffold_256527 1433 0 + 1837 I
|
|
e loxAfr1.scaffold_2979 11430 3597 - 113413 I
|
|
e rn3.chr4 56184219 329 + 187371129 I
|
|
e mm7.chr6 28991048 471 + 149646834 I
|
|
e bosTau2.chr4 19312883 12 - 69556449 I
|
|
e oryCun1.scaffold_213837 7852 41067 + 53501 I
|
|
|
|
a score=75175.000000
|
|
s hg17.chr7 127473906 327 + 158628139 agttccccgCTTTATGTTATGG------------------------gttttgttttgttttgttttt----------ttt-attgagacagagtttcactcttgttgcccaggctgtagtgcaatggtctgatcttggctcactgcaacctccacttcccaggttcaagccattctcctgcctcagcctctcaagtagctgggattacagacactcaccaccacacctggctaattttgtatttttagtagagatgaggtttcaccatgttggccaggctggtctcgaaatcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggcttgagctaccacgcct
|
|
s panTro1.chr6 129887783 314 + 161576975 AGTTCCCCGCTTTATATTATGG------------------------Gtttttttttttttttttttt----------ttttattgagacagagtttcactcttgttgcccaggctgtagtg--------------tggctcactgcaacctccacttcccaggttcaagccattctcctgcctcagcctctcaagtagctgggattacagacactcaccaccacacctggctaattttgtatttttagtagagatgaggtttcatcatgttggccaggctggtctcgaaatcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggcttgagctaccacgcct
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165790729 362 + 196418989 ACTTCCCTACTTTACATGATGGGTTGGTTCttttgtttttgtttttgttttgttttgttttgttttttgtttgtttgtttttttgagatggagtttcactcttgttgctcaggctgtagtgcaatggtctgatctcggctcactgcaacctccacctcccaggttcaagccattctcctgcctcagcctcccaagtagctgggactacaggcacttgccaccacacctggctaattttgtatttttactagagatgaggtttcaccatgttggccaggctggtctggaactcccgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacctgcgtgagctaccacgccc
|
|
i rheMac2.chr3 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_309554 3896 34801 + 42008 I
|
|
e dasNov1.scaffold_256527 1433 0 + 1837 I
|
|
e loxAfr1.scaffold_2979 11430 3597 - 113413 I
|
|
e canFam2.chr14 52849228 198 - 63938239 I
|
|
e rn3.chr4 56184219 329 + 187371129 I
|
|
e mm7.chr6 28991048 471 + 149646834 I
|
|
e bosTau2.chr4 19312883 12 - 69556449 I
|
|
e oryCun1.scaffold_213837 7852 41067 + 53501 I
|
|
|
|
a score=151646.000000
|
|
s hg17.chr7 127474233 172 + 158628139 ggctGGGTTGGTTCTCAATGGAGTGGTTTGTTTTTGGAGCTGCTCT-GCGCAGtggggacca-----gaataggcctg-------------------ggttcctag---cccattgctattccttaccagctg---tggattctaaggaaagtcatttaacctcgctggaccttag-attcctcatccctgaaGCCCAAGGGTa
|
|
s rheMac2.chr3 165791091 172 + 196418989 ggctGGGTTGGTTCTTAATGGAGAGGTTTGTTTTTGGAGCTGCTCT-GCGCAGTGgggacca-----gaataggcctg-------------------ggttcccag---cccatcgctattccttaccagctg---cagattctaagggaagtcatttaacctccctggagcttag-tttcctcatccctgaagcccaaggata
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129888097 172 + 161576975 ggctAGGTTGGTTCTCAATGGAGTGGTTTGTTTTTGGAGCTGCTCT-GCGCAGTGgggacca-----gaataggcctg-------------------ggttcctag---cccattgctattccttaccagctg---tggattctaaggaaagtcatttaatctccctggaccttag-attcctcatcCCTGAAGCCCAAGGATA
|
|
i panTro1.chr6 C 0 C 0
|
|
s loxAfr1.scaffold_2979 15027 196 - 113413 GGATGTTCTGGTTCTTAAAAGACCGGTTTGTTCTCGGAGCTGCTCT-TCGCTGTGGTGACGCGACAGGACTGGGCCTGACTTCGTTGTTCTTGTctgggtttctgg---cccatctctatcccttaccagctg---ggggtcctgggggaagtcacttaacttccgtgcacctcag-tttcctcatccctgaagctacaggata
|
|
i loxAfr1.scaffold_2979 I 3597 C 0
|
|
s dasNov1.scaffold_102887 2638 170 - 10616 ----GGGCTGGTACTTAGCAGAAGAGTTGATTTTTGGA---------GCCCAAAGGTGACCC-----GAACGGGCCTCATCTCACAGTT--------GGCGcctgggttcctgactctgcctcttaccagctg---cgggttctggagggaggc----aatctcccaggacctcag-tttcctcatccgtgaagcgggaagata
|
|
i dasNov1.scaffold_102887 n 0 C 0
|
|
s canFam2.chr14 52849426 157 - 63938239 ----GGGCTGGTGCTTAA-----CGGTTCGGTTTCAGGGCTGCTCTCCCCCTGTGGGGACGC-----GAACGG------------------------GGCTCCCTG---CCCATCGctactccttcccagctg---gtggttctggggaaagtcactgaacctccatggacttcagttttcCGCGTCCCTCAAGCCCGACG---
|
|
i canFam2.chr14 I 198 C 0
|
|
s mm7.chr6 28991519 187 + 149646834 -----GGCTGGTTCTGAGGATGATGGTTTGTTTTCAAAGCTATTTT-CAGTTGGGGTGAACT-----CAATAGGCCTGATCCAGTTGTTTCACACCTGGATCCCTG---GCTATCTCTAATCCTTAACAACTAGCTGAGGTTTTAAGACAGAAAGCTGAACTGTTCTGTATCT--G-TTTCCTCCCATTAGGAACCCAATGATA
|
|
i mm7.chr6 I 471 I 14
|
|
s rn3.chr4 56184548 185 + 187371129 ----TGGTTGGTTCTGAGGGCGATGGTTTGTTTTCAAAACTGCTTT-CAGTTGGAGTGACCT-----CAATAGGCCTGATCCAGTTGTTC--AACCTGGCTCCCTG---GCTTTCTCTAATCCTTAACAGCTAGCTGAGGTTTTAAGACAGGAAGCCAAACTCTTCCGTATCT----TTTCCTCCCACTAGGAACCCAAAGATA
|
|
i rn3.chr4 I 329 I 67
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_309554 3896 34801 + 42008 I
|
|
e bosTau2.chr4 19312883 12 - 69556449 I
|
|
e oryCun1.scaffold_213837 7852 41067 + 53501 I
|
|
|
|
a score=-6187.000000
|
|
s hg17.chr7 127474405 124 + 158628139 aaacaaaacaaaacaaaacaaaacaaaccaaCCCATCATGTAAAGCGGGGAACTACAAACGATACAGGTGAAACATGCCTACCACACC-ACTCACAGGCTATGATGACAAAAACGTGGCTACATC
|
|
s panTro1.chr6 129888269 114 + 161576975 AAACAAAACAAAACAAA----------CCAACCCATCATGTAAAGTGGGGAACTACAAACGATACAGGTGAACCATGCCTACCACCCC-ACTCACAGGCTATGATGACAAAAACGTGGCTACATC
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165791263 110 + 196418989 aAACAAAACAAAACAAA--------------CCCATCATGTAAAATGGGGAACTGCAAACGATGCAGGTGAACCAAGCCTGCCACCCC-ATTCACAGGCTATGATAAGGAAAACCTGGCTACATC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 28991720 70 + 149646834 aaaaaaaaaaaaaaaaa--------------------------------aaaCAACAACCGAAA----------------ACAACAAC-AACAACAAACC------AAACAAACATTGTTTGATC
|
|
i mm7.chr6 I 14 I 3
|
|
s canFam2.chr14 52849583 48 - 63938239 -------------------------------------------------------------------------AAGGCTCAGGCTCCT-ACTCCCAGGCC--GGGTGAGGAAATGCGGCTGCGT-
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_102887 2808 42 - 10616 -----------------------------------------------------------------------------------acatcaattcacaggTTGCGATGTGGCCAGTAACGCGACGCC
|
|
i dasNov1.scaffold_102887 C 0 C 0
|
|
s loxAfr1.scaffold_2979 15223 33 - 113413 -----------------------------------------------------------------------------------acacctactcacaggtcgtggt---------gtggCAATATC
|
|
i loxAfr1.scaffold_2979 C 0 I 1
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_309554 3896 34801 + 42008 I
|
|
e rn3.chr4 56184733 67 + 187371129 I
|
|
e bosTau2.chr4 19312883 12 - 69556449 I
|
|
e oryCun1.scaffold_213837 7852 41067 + 53501 I
|
|
|
|
a score=2666.000000
|
|
s hg17.chr7 127474529 68 + 158628139 TGGGACCACCCCC-CAACCCCCACTTTGTACGTAG----------GAAATACGGAGTTGAGGA--TGGAGACCCACAGTAT
|
|
s panTro1.chr6 129888383 68 + 161576975 TGGGACCACCCCC-CAACCCCCACTTTGTACGTAG----------GAAATACGGAGTTGAGGA--TGGAGACCCACAGTAT
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165791373 69 + 196418989 TGGGACCACCCCCACAACCCCCACTTTGTACATAG----------GAAATACGGGGTTGAGGA--TGGAGACCCACAGTGA
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 28991793 32 + 149646834 GACAGGCCCTTGC-CACCTGCCCCT----------------------------------GGGAC-TGG-------------
|
|
i mm7.chr6 I 3 C 0
|
|
s oryCun1.scaffold_194876 378 61 - 8791 TGCGGCCCCTCCA-CGGCCTCACCTTCGTACACGG----------GAAACAACGG---GAGGACGTGGAAACTCA------
|
|
i oryCun1.scaffold_194876 n 41067 C 0
|
|
s canFam2.chr14 52849631 51 - 63938239 ---------------GCACCGTCCTGCGTACGCGG----------GAAACCCGGGGTAGAGGA-----GGACTCGCGGGGC
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_102887 2850 58 - 10616 TGGGACAGCCCCC-----------TTTATACACAG----------GAAATAATGGGTGGAAGA--TGGAGGGTCGTGGCAC
|
|
i dasNov1.scaffold_102887 C 0 C 0
|
|
s loxAfr1.scaffold_2979 15257 60 - 113413 -------------------CGCGTCTGGCACACAGGCAGACACACGGAATAGCGCGTTCAGCA--TGGAGGCTCGAGGGGC
|
|
i loxAfr1.scaffold_2979 I 1 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_309554 3896 34801 + 42008 I
|
|
e rn3.chr4 56184733 67 + 187371129 I
|
|
e bosTau2.chr4 19312883 12 - 69556449 I
|
|
|
|
a score=-63232.000000
|
|
s hg17.chr7 127474597 202 + 158628139 GTCCAGAGTGT-CCCCAAAGGCCACAGTG-------------------------------CCCG-----CCTGGAGCCCTCCAGAGA--G-------------------CGTGCACTCC---CTGGGGTGCCAGCCAGAGACAACTTGCCCTGAGGCTTGGAA-CTC--GATTCTCCGCGTGCCA---------GAGAAGGGG-TGGGACTTCAGAA-CCCCCAACCCCG-CAATCTGGGTCGGGGAGCCTGGCGCACTGCGGGCCGCTCCCTCTAAC
|
|
s panTro1.chr6 129888451 202 + 161576975 GTCCAGAGCAT-CCCCAAAGGCCACAGTG-------------------------------CCCG-----CCTGGAGCCCTCCAGAGA--G-------------------CGCGCACTCC---CTGGGGTGCCAGCCAGAGACAACTTGCCCTGAGGCTTGGAA-CTC--GATTCTCCGCGTGCCA---------GAGAAGGGG-TGGGACTGCAGAA-CCCCCAACCCCG-CAATCTGGGTCGGGGAGCCTGGCGCACTGCGGGCCGCTCCCTCTAAC
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165791442 202 + 196418989 GTCCAGAGCGT-CCCCAAAGGCCGCAGTG-------------------------------CCCG-----CCTGGAGTCCTCCAGAGA--G-------------------CACGCACTCC---CTTGGGTGCCAACCAGAGACAACTCGCCCTGAGGCTTGGAA-CTC--GATTCTCTGCGTGCCA---------GAGAAGGGG-TGGGACTGCAGAACCCCCCAACCCCC-CATTCTGGGTAGGGGCACCTGGCGCA-GGCCGGCCGCTCCCTCTAAC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56184800 139 + 187371129 GTCCAGAGCAT-CCCGAAA-----------------------------------------CACA-----CTTGCGGACTTCGAAGCA--G--------------------GTGCATTCT--------ATGTCATCATAAGACGAAATG-----------AGAT-GAC--TGTCTTTCGGGTACCA---------AAGGACAGT-TTTTG---------CCCTGA-----------------------GCGTGCGACT------AGTTTCCCCTCTGAG
|
|
i rn3.chr4 I 67 C 0
|
|
s mm7.chr6 28991825 139 + 149646834 -TCCAGAGCAT-CCCTAAA-----------------------------------------CACA-----CTTGCGACCTTCGAAGCA--G--------------------GTGCATTCT--------GTGATGTCACAGGATGAAATG-----------AGAC-GAC--TGTTCTTCGGGTACCA---------AAGGAAGACAAGTTG---------CCCTGA-----------------------GCTTGGGACC------AGTTTCTCCTCTGAG
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_194876 439 155 - 8791 ----AGGCCGT---GGAGG-----------------------------------------CAGG-----CTCGCCACACCCAAGGGATGG--------------------ATGCCTGCCCCCCGGGGGCGCCAACCGGAGACCAAGCC-----------GGGCAGCC--CGCTCTCCGCGCGCCACCGCAGGCGAGGCGAAGT-CAGCG---------CCCTCAACCCT------------------GCCTGGGAC-------GGCGCGCACACTG--
|
|
i oryCun1.scaffold_194876 C 0 C 0
|
|
s canFam2.chr14 52849682 139 - 63938239 GTCCGAGCCGC-TCCGAGGGCCG-------------------------------------CGTG-----CCCGGCCGGGCTCGGGGC--G--------------------TTGCGCCCA---GTGGAGCG---------GGC-----------------GGAG-------------CGCGCGCCT---------GGGCGCGGG-AGCCG---------ACCCCACCCCGGCCCATCCCGGCGGGC--GCGGGGCGCACGGAGAGCCG-----------
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_102887 2908 241 - 10616 GCCCCGAGCGCCCCCCAAAAGCCGCAGGGCCCGGTCCTCTTACAGGCTTCAGGAGCGAGCCCCG-----CGCGTAGCCTTGGGGACA--GACTCCTGAACTAGGAGTCGTGTGTCTCTC---GGGGAGCGCCAATCTGAGACCAC-CGCCCTGAGCGTGGGAG-CCTCGGGTCCCTCGAGCGCTA-----------GCAGCAG-TGGGA---------GCTGAGAGCGCC-CCGTCCGGGTGGGC--GCCTGGAGCTTGGCG-AGCGCTCTCTCGAAC
|
|
i dasNov1.scaffold_102887 C 0 C 0
|
|
s loxAfr1.scaffold_2979 15317 142 - 113413 GTTCGGAGCGC-CCCCAAA-GCCTCAGTG-------------------------------CCCGGTGCTCCTTCCAGCCTCCGGAGA--G-------------------GGCGACCTGC--------GTGTGGCCTTGGAGCGGACTC--TCTAACTTGGGAA-CTC--ATGTCTCTG---------------------GGGG-TGCTA---------ATGGGAGGCCACATGCTCTGAG--------------------------------------
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_309554 3896 34801 + 42008 I
|
|
e bosTau2.chr4 19312883 12 - 69556449 I
|
|
|
|
a score=-123387.000000
|
|
s hg17.chr7 127474799 154 + 158628139 C--CTGGGCTT---------------------CCCTGGCGTCCA----------------------GGGCCGTCGG---------------------GGCCG----AGTCCCGATTCGCTCCCACCCCGAAGCCGCGCCAGGACCAACGAGGGCGC----AGCCGTAT---------GCCCCAG---CCCGCTCCGCGGAGCCCCT--CACAGCCAcccccgccc----cgaccgcgccccgcgcg
|
|
s panTro1.chr6 129888653 154 + 161576975 C--CTGGGCTT---------------------CCCTGGCGTCCA----------------------GGGCCGTCGG---------------------GGCCG----AGTCCCGATTCGCTCCCACCCCGAAGCCGCGCCAGGGCCAAGGAGGGCGC----AGCCGTAT---------GCCCCAG---CCTGCTCCGCGGAGCCCCT--CACAGCCAcccccgccc----cgaccgcgccccgcgcg
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165791644 149 + 196418989 A--CTGGGCTT---------------------CCCGGGCTTACA----------------------GGGCCGTCGG---------------------GGCCG----AGTCCTGGTTCGCTCCCGCCCGGAGGCCGCGCCCGGGCCAGCGAGGGCGC----CACCGGAT---------GCCCCAG---CCCGCTCCACGGAGCCCCT--CACAGTCAcccccgccc----cggccgcgcccc-----
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56184939 107 + 187371129 CAACCGGGTT-------------------------AGGTATGCA--------------------AAGAGCCGTCGG--------------AAGAAGCAACTG-----GTTCTGGCTCGCT---------------------GGC----------------CTCCCTGT---------CCCAAAG---CAGGCCTTCTATAGCCC--------------------------GACTGCTCCCCGCGGT
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 28991964 111 + 149646834 CAGCCAGGTT-------------------------AGGTATGCA--------------------AAGAGCTGTCGG--------------AAAAAGCAGCTGGCAGAGTCCTGGCTCACT---------------------GGT----------------CTCCCTGT---------CCCCAAG---CCAGCCTTCTGTAGCCT---------------------------CTTGCTCCCTGCGGT
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_194876 594 106 - 8791 ----CGGGCA-------------------------GAGCTCCCA--------------------AGGGCTTCTCGG--------------CATCCCAAGCCG-----TCCATGCTCCACG---------------------GGC----GAGAGGTG----CGCCCTG--------------GAGGCCCCAGCCTCCCAGGCACCGG-----------------------CGCCTGGTCCC------
|
|
i oryCun1.scaffold_194876 C 0 C 0
|
|
s bosTau2.chr4 19312895 147 - 69556449 ---CCGGGTTTC--------------------CCCGGGGGCCCA----------------------GAGCCGTCGGGTCTTGCCGCCCAGCGGAGCTGGCTG-----CTCCGGCCTCACT---------------------GTC-----GGGGCGC----CACCG------------CCCCCAG---CCGGCTCAGAGGAACCCCT--CACCGCCACCCTGTCCC-AGGCGGCCGTTCCCCGAGA-
|
|
i bosTau2.chr4 I 12 C 0
|
|
s canFam2.chr14 52849821 82 - 63938239 -------------------------------------------------------------------GGCCGTCGG---------------------GGCAG-----CTCCG----CTTG---------------------GTC-----GAGGTcc------------------------ccgg---cgggcccggg-----ccct--cgaggacgcggcgctcc-cgccagccgccccc------
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_102887 3149 199 - 10616 --TCCGGGCTCCTCGGGCCCGAACGCTGTGGGTCTGAGCGTCTGCGGAACTCGGCAGCCCGGCTGGAGACTGTCGC-------CGTCCACCGAAGCCGGCTG-----CGCTGGCCTCGCC---------------------GTC-----GGCGCGC----CCCGGAGCAGCGAGGGAGCCAGAG---CGGGTCCCGCAACAATCCTGGGGTGGCAGCCCCAGCCCCCCGTCGCCGCGCCCCGCGCG
|
|
i dasNov1.scaffold_102887 C 0 C 0
|
|
s loxAfr1.scaffold_2979 15459 89 - 113413 -------------------------------CTTTGGCTCTCCA----------------------GTTCTCTGCG---------------------CGCCA-----GGGCGGGTGTGCG---------------------GGT----AGGAGCGCTCCATCCCGGGT---------GTGGGAG---CTGAGCGAGCGGCGAGCN-----------------------------------------
|
|
i loxAfr1.scaffold_2979 C 0 I 135
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_309554 3896 34801 + 42008 I
|
|
|
|
a score=52355.000000
|
|
s hg17.chr7 127474953 114 + 158628139 gcTCGA-AGCACCTTCCCAAGGGGCTGGTCCTTGC----------GCCATAGTCGCGCCGGAGCCTCTGGAGGGACATCAAGGATTT-CTCGCTCCTA-CCAGCCACCCCC-AAATTTTTGGGAGGTA
|
|
s panTro1.chr6 129888807 114 + 161576975 gcTCGA-AGCACCTTCCCGAGGGGCTGGTCCTTGC----------GCCATAGTCGGGCCGGAGCCTCTGGAGGGACATCAAGGATTT-CTCGCTCCTA-CCAGCCACCCCC-AAATTTTTGGGAGGTA
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165791793 107 + 196418989 --------gcACCTTCCCGAGGGGCCGATCCTTGC----------GCCATAGTCGCGCCAGAGCCTCTGGCGGGACATCGAGGACTT-CTCGCTCCTG-CCAGCCAACCCC-AAATTTTTGGGAGGTA
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56185046 117 + 187371129 GCTGGC-AGCACCATCCCAAGGGACCCGTCCTTAAACTACCTTAGACTACCGCTGCTCTGTAGCTGCTGGCGCGACCTCCAGGATTACCCGGCTCATA-CCAAGCGCCCCC-AACT--------CGCA
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 28992075 107 + 149646834 GCTGGA-AGCACCATCCCAAGGGACCCGTCCTTAA----------ACTACCGCTGCTCAGTAGCTGCTGGCCGGACCTCGAGGATTA-CCGGCTCATA-CCAAGCGCCCCCAAACT--------TGCA
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_194876 700 113 - 8791 GCTCAA-AGCACCGTCCGGCGGGG-CGATCCTTGC----------GCCACCGTCGCGCGGGAGCCTCTGGCGGGACTTTGAGGATTT-CTAGGTGCCT-GCGGCTGCCCCC-AGCCTTTCGGGACGCA
|
|
i oryCun1.scaffold_194876 C 0 C 0
|
|
s bosTau2.chr4 19313042 75 - 69556449 ---------------CCCGAGGGTCAGATCCTGGG----------GCC--------------------------ACCTCGAGGATTT-CTCACACCTGCCCAGCCACCCCC-AACTTTTCAGGCGATA
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52849903 19 - 63938239 --------------------------gcccttggg----------gcc--------------------------gccccgg-----------------------------------------------
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_102887 3348 114 - 10616 GCTCGAGGGCGCTGTCTCGAGAGGTGGATTCCCGT----------GCCACAG-AGCGTGGGAAGCTCTGGCAGGACTTCGAGGATCT-CTCGCGCTTG-CCGCCGTCCCTA-AAACTTTTGATACGTA
|
|
i dasNov1.scaffold_102887 C 0 C 0
|
|
s loxAfr1.scaffold_2979 15683 104 - 113413 GCTCGAAGGCACC------AGG----TATCCCGGC----------GCCACAAACATCGCAGCACCTTTGACCGGACCTCGAGGACT--CTCGCTCCTG-CCAGAGGTCCCC-AGTCCTCCGGGACGTA
|
|
i loxAfr1.scaffold_2979 I 135 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_309554 3896 34801 + 42008 I
|
|
|
|
a score=686179.000000
|
|
s hg17.chr7 127475067 598 + 158628139 CCCAAGGGTGCGCGCG-TGGCTCCTGGCGC-GCCGAGGCCCTCCCTCGA--GGCCCCGCGA------------------GGTGCACACTGCGGGCCCAGGGCTA--GCAGCCGCCCG----GCAC---------GTCGCTACCC----------TGAGG---GGCGGGGCGG---------GAGCTGGCGCTAGAAATGCGCCGGGGCCTGCGGGGCAGTTGCGCAAGTTGTGATCGGGCCGCTATAAGAGGGGCGGGCAGGCATGGAGCCCCG--------TAGGAATCGCAGCGCCAGC--GGTT---GCA-----AGGTAAGGCCCC-G-GCG---CGCTCCTTCCTCCTT---CTCTGCTGGTCTTTCTTGGCAGGCCACAGGGCCCC-ACACAACTCTGGATCCCGGGGAAACTGAGTCAGGAGG-GATGCAGGGCGGATGGCTTAGTTCTGGACTATGATAGCTTTGTACCGAG-----TTCTAGCCAGATAGAAGGTTACCGGGAGCTGGGGAGCGTTGGATTTGCTGCTGGGCTGTGCCGGTGCCCAGAAGGCAG------GACCTTGCAGAACCAGCCAGGTCCCTGGGAGACTGTCAGA--------CCCACCAACCTGGTGGCATTCGCAGAG-CTGAGATGCATTGGAAATTGCCTTGGGCAC-ATCCCCAAAGATCAGGAT-GTCCCACCC-----CAG
|
|
s panTro1.chr6 129888921 598 + 161576975 CCCAAGGGTGCGCGCG-TGGCTCCTGGCGC-GCCGAGGCCCTCCCTCGA--GGCCCCGCGA------------------GGTGCACACTGCGGGCCCAGGGCTA--GCAGCCGCCCG----GCAC---------GTCGCTACCC----------TGAGG---GGCGGGGCGG---------GAGCTGGCGCTAGAAATGCGCCGGGGCCTGCGGGGCAGTTGCGCAAGTTGTGATCGGGCCGCTATAAGAGGGGCGGGCAGGCATGGAGCCCCG--------TAGGAATCGCAGCGCCAGC--GGTT---GCA-----AGGTAAGGCCCC-G-GCG---CGCTCCTTCCTCCTT---CTCTGCTGGTCTTTCTTGGCAGGCCACAGGGCCCC-ACACAACTCTGGATCCCGGGGAAACTGAGTCAGGAGG-GAGGCAGGGCGGATGGCTTAGTTCTGGACTATGATAGCTTTGTACCGAG-----TTCTAGCCAGATAGAAGGTTACCGGGAGCTGGGGAGCGCTGGATTTGCTGCTGGGCTGTGCCGGTGCCCAGAAGGCAG------GACCTTGCAGAACCAGCCAGGTCCCTGGGAGACTGTCAGA--------CCCACCAACCTCGTGGCATTCGCAGAG-CTGAGATGCATTGGAAATTGCCTTGGGCAC-ATCCCCAAAGATCAGGAT-GTGCCACCC-----CAG
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165791900 592 + 196418989 CCCGAGGGTGCGCGCG-TGGCTCCTGGTGA-GCCGAGGCCCTCCCTCGA--GGCCCCGCGA------------------GGCGCACACTGCGGGCCCGGGGCTC--GCAGCCGCCCC----GCAC---------GTCGCTACCC----------TGAGG---GGCGGGGCGG---------AAGCTGGCGTTTGGAGTGCCCCGGGGCCTGCAGGGCAGTTGCGCAAGTTGTGA-AGGGCCGCTATAAGAGGGGCGGGCAGGCATGGAGCCCCG--------GAGGAATCGCGGAGCCGGC--GACT---GCA-----AGGTAAGGCCCC-G-GCG---CGCTCCTTCCTCCTT---CTCTGCTGGTCTTTCTTGGCAGGCCACAGCGCCCC-ACCCCACTCTGGATCCCGGGGAAACTGAGTCAGGAG------------GGATGGCTTAGTTCTGGACTATGATAGCTTTGTACCGAG-----TTCTAGCCAGAGAGAAGGCTACTGGGATTGGAGGAGCGTTGGATTCGCTGCTGGGCTGTGCCGGTGCCCAAAAGGCAGGACTCTGACCTTGCAGAACTAGCCAGGTCCCTGGGAGACTGTCAGA--------CCCACCAACCTCGTGGCATTCGCAGAG-CTAAGATGCACTGGAAATTGCCTTGGGCAC-ATCCGCAAAGATCAGGGT-GTCCCACCC-----CGG
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56185163 523 + 187371129 CTCGAGGGAGCG-------------------GCTGAAGTCCTCCCTTGA--GGCACCCAGAGCAGGACCTGGCTCCTGCGTGGAGCACT----------AGGCT--GCAACAGCC-------ACC---------GTCGCTGACC----------CGCTG---GGTGGGGCGG---------GAATTGGCGCTCGCAAGG-ACTGGGGCTGGCCGGGCAGTTGCGCAAGTTGCACTGGGGCAACTATAAGAGGGGCAGGCAGGCATGGAGCCCCG--------GAGGAATCCCTGCTCCAGC--AGCT---GCA-----AGGTAAGGCCTT-GGGCG---CATTACTTTCTC------CTCCACCAGTCTTTC-TGATAG-------CACCCC-ACCCAGCCCTGGAAATTAGAGAAACTGAGGCAAGAAG-GAGGTAGTGTGGACAGCTTGGTGCTGAACTA----AGTTTTGCAGGGAAGGACTCTGCAGACGGAGCGAAAGAGGCTGGGAGCTGAGGGGCATTAGAATCCTGGCTGGGCCG-GCCTGTGCCCACAGGGCACCAACCTGTTCTTGCAAAGCCAGCCAGGACTCCAAGCCTGTCTTTGG--------TC------------------TGCAGAC-TTGAG---------------------------------ATGATTAGGGG------ACAG--------
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 28992182 515 + 149646834 CTCGAGGGCGCG-------------------GCTGAAGTTCTCCCTCGA--GGCGCCTAGA------------------ATGGAGCACT----------AGGTT--GCTGCTGCC-------ACT---------GTTGCTGGCC----------CGCTG---GGTGGGGCGG---------GAGTTGGCGCTCGCAGGG-ACTGGGGCTGGCCGGACAGTTGCGCAAGTGGCACTGGGGCAGTTATAAGAGGGGCAGGCAGGCATGGAGCCCCG--------GAGGGATCCCTGCTCCAGC--AGCT---GCA-----AGGTAAGGCCCG-GGGCG---CGCTACTTTCTC------CTCCACCAGTCTTTC-TAATAG-------CACCCC-ATCCAGCTCTGGAAATTAGAGAAACTGAGGCAAGAAG-GAGGTCATGTGGACAGCTTGGTGTTGAATTCAG-TAGTTTTGCAGCGAGGGACTCTGCAGACAGAGGGAAGGCTGTTGGGAGCTGAAAGGCATTAAATTCCTGGCTGGGCCG-GCCTGTGCCCACAGGGCACCAACCTGTTCTTGCAAAGCCAGCCAGGGCTCCAAGCCTGTCTTTGG--------TC------------------TGCAGAC-TTGAG---------------------------------ATGGTTAGGTT--TCCCACAG-----CGT
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_194876 813 564 - 8791 CTAGTGCGTGTGC------------------GCTGGGCTCCT---------GGCACCGGAG---------------CGCACGACGCACTGC-CGCCCGAGGCCC--GCAGCCGCCCG----GCCC---------GACGCTGCCC----------CGCAG---GGCGGGGCGG---------GAGCTGGCGCTGGGGGTGCGCCGGGGCCTGCCGGGGAGTTGCGTAAGCTGCGCTGGGGCGGCTATAAGAGGGGCCGGCAGGCATGGAGCCCCG--------GAGGAGTCCCGGCGCCAGC--AGCT---GCA-----AGGTAAGGCCCA-GTGCGCTCCACTCCTTTCTCCTTCGTCTCCACCTTTCTTCCTTGGTGG------CCACCGC-TCCCCACTCCAGACGATAGGGAAACTGAGGCAGGCGG-CAGCGAGGGCAGATGTCTGGATTCTGGACTAGGATAGCTTTGCACCGAG-----TTCCAGCCAGAGGGCAAGCAGCCGTGAGCTG-GGGGCAGTGGATTCATGGCTGGG------CTGTGCCCAGAGGGCAAGGACCCCTCCTCACAGAACCAGCCAGGACCCCAGGAGACTGCTGGG--------TC------------------CGCAGAG-CTGGGCAGCTTTGGAAATTTGCTTTGAGCG-CAGGCCAAAGATCAGGGT-GTCCTACCTCTCCCCAT
|
|
i oryCun1.scaffold_194876 C 0 C 0
|
|
s bosTau2.chr4 19313117 571 - 69556449 CCGGAGGGTGGGCGTG-GGGCTCCTGGTGCATCCGAGTCCCTCCCTGGA--GTCCCC--GA-----------------------------------------cc--gcggccgcccg----gccc---------gacgctgccc----------cgccgcccggcagggcgg---------gagccggcgctgcgggtgcgccccggccagccgggcAGTTGCGCAAGTTGTGCTTCGGCGGCTATAAGAGGGGCGGGCAGGCATGGAGCCCCGGAGGGATCGAGGAATCGCGGCGCCAGC--AGCG---GCG-----AGGTAAGTGCCC-G-GCT---CTCTCCTTTCTACTT---CTCCGCCGGTCTTTCTTGGCAGGCCACCCAGCCCA-GCCCA-CCCGGGACCCCGGGGAAACTGAGGCAGGCGA-AGGGCAGGGCGGACGGCTTGGTTCTGGATTGGGGTAACTTTGCACCAGAG----TTCTAACCGGTGGGAAGACGGCTGGGAGCCGGGGAACGTTAGCTTTGGGGCTGGGATGTGCC--TGCC-------CAGGAATCAGCGCTCCAGGAGCCAGCCTGGGCCCCAGGAGACTGCCAGA--------GCCTCCAGCCC---------TGCCT---TTGACATGCTTTGGAAACGGCCTTGAGCAC-ACCCCCAAAGATCAGGAT-ACCTCGCCC-----CCA
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52849922 532 - 63938239 ---------gggcgcgcgggctcc---ggcagccgaggccctccctcga--ggcccg--gg----------------------------------------ccc--gcgg---------------------------------c----------cgccgccgggcggggcgg---------gggctggcgctcggggtgcg-gcgggcctgccggccAGATGCGCAAGTTGCGCTCGGGCGGCTATAAGAGGGGCGGGCAGGCATGGAGCCCCG--------GAGGAGTCGCGGCGCCAGC--AGCT---GCG-----AGGTAAGGGCCCGG-GCG---CGCTGCTCTTTCCCT---CTCCGCCGGTCTTTCTGGGCCAGGCACCACCCCCC-ACCCC-CCC-GAACGCCGGGGAAACTGAGGCGCGCGAGGGGGCGGGGCGCATGGCTTGGTTCTGGACCTTGGCGGCTTCGTGGCGGGG----TTCTGACGGGAGGGAAGGCAGCGGGGAGATCTGGA--------TTCGGGGCCGGGCTGTGCCGGTGCCCACGGAGCAGGAATCTGTGC-CATGGAGCC-GCCGGGGCCCCAGGAGACTGTCAGA--------GCCCGCGGCCC---------AGCTG---CTGAGATGCTGTGGAAATTGCCTCGAGCAC-ATCCCCAAAGATCAGGGT-ACCCTGCCC-----CCA
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_102887 3462 555 - 10616 CGCAAGGGTGTGCGTG-TGGCTCCTGGGACAGCGGAGTCCCT--CTCGA--GGCCGCCCGG--------------------------------------GGCCC--GCAGCAGACGGGCTAGCCC---------GACGCTGCCC----------AGCCG---GGCGGGGCGG---------AGGCTGGCGCT-GGGGTGCGCCGGGGCCTGCGGGCCCGTTGCGCAAGTTCTGCTCGGGCGGCTATAAGAGGGACGCGCAGGCATGGAGCCCTG---------AGGAATCGCGGCGACAGC--AGCTGCGGCG-----AGGTAAGGCCCG-G-GCG---CGCT------TTCTT---CTCTGCCGGTCCTTCTTAGAAGGCCACAGCACCCC-CCACTCC----AACCCCGGAAAAACAGAGGTGGACGG-GTAACAGGGTGGAAGACTTGGCTCTGGGCAATGGTAGCATTGCACCGAG-----TTCTAGCCAGGGGGAAGGCGGCTGGCAGCTGGGGAGGGTTGGATTCCGGGCTGGGCTGTGCAGGTGCCCACGAGGTAGGAGTGTGCACTCACTGGT---------------GGAGACCTTCAGA--------GCTGCCAGCCC---------CACCGGGACCAAGGTGCTTTGGAAATTGCCTTGAGCAC-ATCCCCAAAGGTCAAGGT-GCCACACAC-----ACA
|
|
i dasNov1.scaffold_102887 C 0 C 0
|
|
s loxAfr1.scaffold_2979 15787 528 - 113413 TTCGAGGGTGCGAGGG-G--CTTGGGCGCC-TCCGGGTCCCT-CCCTGA--GGCCACCACT-------------------------------CACCCACGGCGC--GCA-CCGGCCG----GTCC---------GCTGCGGTCC------------CGG---GGCGGGGCAG---------GCGCTGGCACTGG------GTGCGGGCCGATGAGGCGGTTGCGCAAGTGGCGCGCGGGCGGCTATAAGAGCTGCGGGCAGGCATGGAGCCC-G--------GAGGAATAGCGGAGCTGGA--GGCT---GCG-----AGGTAAGGCCGG-C-GCG---CGCT--------------CCCTTC----CCTTCTAGGCAGGACGCGGCACCCCCACCCCAC--------CTGGGGAAACAGAGGCAGGCTG-GGAGCAGGGC-GATGGCTTGGTTGTGGACTATGGTAACTTTGCCCCGAG-----TTCCACC-AGAGGCAAGGCGGCGGGAACT--GGGAGAGTTGGATTCAGGGCTGGGCTGGATT---------GGGGCAG-----------CGCAGGGTCAGCT-GAGCCCCAGGAGACTGTCGAGTCGCCAGCGTCGCTGTTGC---------CGCAGAG-CTGAGATGCTTTGGAAATTGCTTTGAGCAC-ATCCCCAAAGATCAGGGA---CCCTCCC-----TCG
|
|
i loxAfr1.scaffold_2979 C 0 I 2
|
|
s echTel1.scaffold_183183 2806 483 + 6931 CTCAAGGGTGCCAGCG-GTCCCCCTGCAGT-TCCGGCTCCCC-CTGCGATGGGCTGGAGGG-------------------------------CGCACAGGGCTCCAGCA-CCGCGGG----GTGCCTCCCTGAGGTTGCTGTCCACTGTGATggggcgg---ggcggggcggagggggggcgcgctggc-------------gcgggcAGCCCA-GCCATTGCGCAAGTG--GCGCTGGTGGTTATAAGAAGGGCCCGCAGGCATGGAGCGA-G--------CACGTA-GGCGGCGTTGCACCGGCT---GCGGCGGCAGGGAAGGCCTG-C--TG---GGCT--------------CCCC--------------------CACGGCACCCT--------------------GGGAACCGAGGCAGGCT-------------GATAGACTGGCTGGAGAACAAGGTAACTTTG-TCCGAG-----TTTCACT--GAGGGGAAGCGGCTAAGAC-------------------------------ACT---------CAACCAG-----------CATCCCGCCAGCT-GGGCCCTGGGAGA--AGCGAG--------GTCACTGTCAC---------TGCGGGG-CTGGGATGCTCTGGAAATAGCGTTGTGCACAATCCCCAAAGACCATGGACACCCCGCCC-----CAG
|
|
i echTel1.scaffold_183183 n 34801 I 1303
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
|
|
a score=-22498.000000
|
|
s hg17.chr7 127475665 56 + 158628139 TCTG------AAGGAG-------ATAAAGTTGGGGGTAGGA--GAGACGCAG-ATGCAAGTGATC---AGTCTCA
|
|
s panTro1.chr6 129889519 56 + 161576975 TCTG------AAGGAG-------ATAAAGTTGGGGGTAGGA--GGGACGCAG-ATGCAAGTGATC---AGTCTCA
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165792492 56 + 196418989 TCTG------GAGGAG-------ACAAACTTGGGGGTAGGA--GGGATGCAG-ATGCAAGTGATC---AGTCTCA
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56185686 64 + 187371129 --AG------ATGAACAGATCCGGCAAGGCTGGGCGTGCAG--TGGA-GCAGCCCACAGCTTTCTGCCTTCCTGA
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 28992697 61 + 149646834 TCAG------ATGGAAAAA----GCAAGGCTGGACGTGTAG--TGAG-GCAG-CCACAGCTTTCCGCCTTCCTGA
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_194876 1377 43 - 8791 TCAG------AGGGG--------ACAAAGTTGGCAGTGCAG--AGGGTGCAG----------------GGTCTGA
|
|
i oryCun1.scaffold_194876 C 0 C 0
|
|
s bosTau2.chr4 19313688 45 - 69556449 TGTG------CAGAGG-------ATGTGCGTTGAGTTTCTG--AGG----AG------TGTGA-----GTTCTGA
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52850454 49 - 63938239 TCCG------GAGGCG-------GTGAAGTTGAGGGCGCTG--GGGGTTCGG------GATGA-----GCGCTGG
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_102887 4017 67 - 10616 TACGCACACAAAGGAGGGAT---TCAAAACTGTGGGTGGGGATGGGACGCGG--TGCAAAGGTTC---ACTTCCA
|
|
i dasNov1.scaffold_102887 C 0 M 1299
|
|
s loxAfr1.scaffold_2979 16317 37 - 113413 TCTG------GAGGGG------------GTCGCGGGTACCA----GCTTCGG----------------TTTCTGA
|
|
i loxAfr1.scaffold_2979 I 2 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_183183 3289 1303 + 6931 I
|
|
|
|
a score=89877.000000
|
|
s hg17.chr7 127475721 252 + 158628139 GTCCCAGACA---TTGCCTTGCTCTGCGG--GTAGGAATTC-AGGATTCATTTTCCAGGGAAG--------TTCCTGACCTCTGAATG-AGAGGGGCTGTGTAAGGCCAATGCCTGGGAGGAAGGCAAGGAT-GAGTAGAGGTGGGGGGAAACAAGTGTCAGGAAGA--CTC-------------------------------------------------------------------AAAATCTTCC--------AGAGAAATTGTG-CAGGG-TCTTACCAGATCTGTCCTCAAAGCCATGCAAATTGCCTTCTTTGCAATGCA-TACAATGAGGTGTCTCTGGG
|
|
s canFam2.chr14 52850503 261 - 63938239 GTTTCTGAGGACTAGCTTTTGCTCCGCGG--CTAAGAATTC-GGGCATCATTTTCCAGCGGGGGGTCTTCATCTCTGGTGTCTGATTG-CAAGGATTTGTATAAGGCCAAAGCCTAGGAAGGGAAGCACTGCGGAGTAGAGGCGGAAAGAAA-AC---TCAGGAAGAACCCC--------------------------------------------------------------------AAATGTCTC--------AGAGAGATTCTG-ACGAG-TCTCACCACATCTGGCCTTCAAGCCAAGCCAACGGTCTTCTTCACAGTGGA-TGAAATTGGGGTTTTCTGGG
|
|
i canFam2.chr14 C 0 I 226
|
|
s bosTau2.chr4 19313733 246 - 69556449 GGGTGTAAAG---GAGTCTTGGTCTGCAG--ATGAGAATTC-AGGCAACGTTTTCCAGCAGGG--------TTCCTGACTTGTGAATG-CGAAGGACTGTATAAAACCCAGGCCATAGCATGGAG--ATGAGGAAGTAGGGGTGAGCAGAAA-AA---CTGGGAGAA--CCC--------------------------------------------------------------------AAATCTCCC--------AAAGAAATTATG-GAAGA-TCTCACTCCATCTGTCCTCAAAGTCATGAGAACTGCCTTCTACACTGTGGA-TAAAATAGGTTTCCTTTGGG
|
|
i bosTau2.chr4 C 0 I 21
|
|
s oryCun1.scaffold_194876 1420 179 - 8791 CAACTGGACA---GAGCCTTGCTCTCCCAGGGGGAGAATTCTGGTCTTACTTTCCCAGCAAGG--------GCCCTG--CCCTGAAAG-GGAGAGACCGC---------AAGCCTGGAACAAGGGCTTGGATGGAGTGGAAGTGGG--GAGA-AGCAGTTAGGGA--------------------------------------------------------------------------------------------AGAGAAGCTGGG-CAGGACCTCACCCATCGC-GCCT-CAAGGC------------------------------------------------
|
|
i oryCun1.scaffold_194876 C 0 I 37
|
|
s mm7.chr6 28992758 281 + 149646834 AGGCCAGATA---CAACCTTGCTTTGCTG--TTGAGAGTTC--------ATTTTCCAGTGAGG--------GCCT------------------------------------ACCTAGTACTAAAACTACTGTTGAATACAGGTGGGTAGAAA-AACTGTCAGGAAGA--ACCCAGTC-CCCTCCCACCTTCACCCCCAACTTGAGCGTGcacacacaaacacacacacacacaACCAAACAAACCATCATCAACAATAAAAAAGC-----TAGGGCTCTCTCCACATCTGTCC-CAAAGCCATTCAAATTCTCTTCTTTGGGGAACAGAACAGCAGATTGTGGAGAAG
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56185750 245 + 187371129 AGACCAGATA---CAGCTTCGCTTTGCTG---TAAGAATTC--------ATTTTCCATTGAGG--------ACCT------------------------------------ACCTAGTACTAAAACTACTGTTAAGTAGAGATAGGTAGAAA-AACTGTCAGGAAGA--ACACACACACACACACACACACACACACAC-------------------ACACACACACACAC-CCCAAATGAACCATCACCAACAACGAAGAAGCTAGGATAGGACTCTTTCCACATCTGTCC-CAAAGCCATACAAATTATCTTCTTCAGAAGACA---------------------
|
|
i rn3.chr4 C 0 I 54
|
|
s rheMac2.chr3 165792548 251 + 196418989 GACCTAGACA---CTGCCTTGCTCTGCAA--GTAGGAATTC-AGGCTTCATTTTCCAGGG-AG--------TTCCTGACTTCTGAATG-GGAGGGGCTGTATAAGGCCAATGCCCAGGAGGAAGGCAATGAT-GAGTAGAGGT-GGGGGAAACAAGTGTCAGGAAGA--CTC------------------------------------------------------------------AAAAATCTTCC--------AGAGAAATTGTG-CAGGG-TCTCACCAGATCTGTCCTCAAAGCCATGCAAATTGCCTTCTTTGCAATGCA-TACAATGAGGTGTCGTTGGG
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129889575 252 + 161576975 GTCCTAGACA---TTGCCTTACTCTGCGG--GTAGGAATTC-AGGCTTCATTTTCCAGGGAAG--------TTCCTGACCTCTGAATG-AGAGGGGCTGTGTAAGGCCAATGCCTAGGAGGAAGGCAACGAT-GAGTAGAGGTGGGGGGAAACAAGTGTCAGGAAGA--CTC-------------------------------------------------------------------AAAATCTTCC--------AGAGAAATTGTG-CAGGG-TCTTACCAGATCTGTCCTCAAAGCCATGCAAATTGCCTTCTTTGCAATGCA-TACAATGAGGTGTCTCTGGG
|
|
i panTro1.chr6 C 0 C 0
|
|
s loxAfr1.scaffold_2979 16354 243 - 113413 GCACTAGACA---TAGCTTTGCTCTGCGG--ATCAGAATTC-AGGACTCAGTTTCTAGCGGGG---TCTGACCTTCGACCTCTGAACGCAGAGAGGCTGTTAGAGCCTGAGGACAAGGAAGAAGACA------GAGCAGAGG-GGGAAGAAA-AAGTGTAGGAAGAA--CCC--------------------------------------------------------------------AAATGTCCC--------AGTGAAATTGAG-CCTGG-ACTCCCCAAAGCTGCCCTC--AGCTGTGCAAATTGCCTTCTTCAGGATGGA-TAAAATGGGGTTTCT-----
|
|
i loxAfr1.scaffold_2979 C 0 I 596
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_183183 3289 1303 + 6931 I
|
|
e dasNov1.scaffold_102887 4084 1299 - 10616 M
|
|
|
|
a score=-391.000000
|
|
s hg17.chr7 127475973 19 + 158628139 GGTCAGAAC--TGG--------TTATTAG
|
|
s panTro1.chr6 129889827 19 + 161576975 GGTCAGAAC--TGG--------TTATTAG
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165792799 19 + 196418989 GTTTAGAAC--TGG--------TTATTAG
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 28993039 27 + 149646834 GCTTGTAAC--CTGCACAGTTTTTGCTGG
|
|
i mm7.chr6 C 0 I 2
|
|
s bosTau2.chr4 19314000 15 - 69556449 ----GGAAA--GGC--------CTGTTAA
|
|
i bosTau2.chr4 I 21 I 17
|
|
s canFam2.chr14 52850990 15 - 63938239 ----GGAAG--GGC--------CTACTGC
|
|
i canFam2.chr14 I 226 I 18
|
|
s dasNov1.scaffold_259847 27 19 + 4110 GCCCAGAACCGTGG--------TCATG--
|
|
i dasNov1.scaffold_259847 n 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_183183 3289 1303 + 6931 I
|
|
e loxAfr1.scaffold_2979 16597 596 - 113413 I
|
|
e rn3.chr4 56185995 54 + 187371129 I
|
|
e oryCun1.scaffold_194876 1599 37 - 8791 I
|
|
|
|
a score=27420.000000
|
|
s hg17.chr7 127475992 28 + 158628139 GGAACTTCTAGCCA-----GGACTGCTAAATAC----------------
|
|
s panTro1.chr6 129889846 28 + 161576975 GGAACTTCTAGCCA-----GGACTGCTAAATAC----------------
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165792818 28 + 196418989 CGAACCTCTAGCCA-----GGACTGCTAAATAC----------------
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56186049 28 + 187371129 GGCATTTCTACCCA-----GGATGGTTAAATGC----------------
|
|
i rn3.chr4 I 54 C 0
|
|
s mm7.chr6 28993068 28 + 149646834 GGCATTTCTACCCA-----AGATGGTTAAATAC----------------
|
|
i mm7.chr6 I 2 C 0
|
|
s oryCun1.scaffold_194876 1636 28 - 8791 GGCGATTCTAGCCA-----GGACAGCTAAATAC----------------
|
|
i oryCun1.scaffold_194876 I 37 I 2129
|
|
s bosTau2.chr4 19314032 28 - 69556449 CATTTCTCTAGCCA-----AAACTGATAAATGC----------------
|
|
i bosTau2.chr4 I 17 C 0
|
|
s canFam2.chr14 52851023 27 - 63938239 GGCCTCTCTAGTCA-----ATACCG-CAAATAC----------------
|
|
i canFam2.chr14 I 18 C 0
|
|
s dasNov1.scaffold_259847 46 49 + 4110 GGAAATGCCTGTCACCCACATGTTGCTGACTGTTACCTCGTCCACGTAC
|
|
i dasNov1.scaffold_259847 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_183183 3289 1303 + 6931 I
|
|
e loxAfr1.scaffold_2979 16597 596 - 113413 I
|
|
|
|
a score=8847.000000
|
|
s hg17.chr7 127476020 45 + 158628139 GCGCTGTTGGCCCA-------------------CCAGGCTCACCT--------ATAGCCTT-CCTTCAGT-----------CTG
|
|
s dasNov1.scaffold_259847 95 64 + 4110 -GGCTGTTGGCAGGTGGGCCCTGAGCAGACCTACCAAACCCACCC--------ATAGCCTT-CCTTCTCC----------AGGG
|
|
i dasNov1.scaffold_259847 C 0 C 0
|
|
s canFam2.chr14 52851050 44 - 63938239 CCGCTGTTGGCAGG-------------------TGGGCCCCAGGT--------CGAGTCC--CCTCCTCT-----------CCT
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19314060 54 - 69556449 ACACTATTGGCAGG-------------------TGGGCCCCCGGTGACACCTGCCAGTCCTGCCTTCTCT-----------CCT
|
|
i bosTau2.chr4 C 0 C 0
|
|
s mm7.chr6 28993096 54 + 149646834 ACGTTGCCAGCCTG---------------------AGGTCCCTGC--------ATGCCCCT-CCTTCAGCTTTCTTTCTTGCTG
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56186077 54 + 187371129 ACATTGCCAGCCTG---------------------AGGCCCCAAC--------ATGCCCCT-CCTTCAGCTGTCTTTCTCGCTG
|
|
i rn3.chr4 C 0 C 0
|
|
s rheMac2.chr3 165792846 45 + 196418989 GCGCTGTTGGCCCA-------------------CCAGCCTCACAT--------ATAGCCTT-CCTTCAGT-----------CTG
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129889874 45 + 161576975 GCTCTGTTGGCCCA-------------------CCAGGCTCGCCT--------ATAGCCTT-CCTTCAGT-----------CTG
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_183183 3289 1303 + 6931 I
|
|
e loxAfr1.scaffold_2979 16597 596 - 113413 I
|
|
e oryCun1.scaffold_194876 1664 2129 - 8791 I
|
|
|
|
a score=15200.000000
|
|
s hg17.chr7 127476065 32 + 158628139 GGCTTGGTTTGGATTTC-ACTGTGGGTGCCATC
|
|
s panTro1.chr6 129889919 32 + 161576975 CGCTTGGTTTGGATTTC-ACTGTGGGTGCCATC
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165792891 32 + 196418989 TGCTTGGTTTGGATTTC-ACTGTGGGTACCTTC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56186131 30 + 187371129 GGGTTCATTA-GACTGC-ATTCTGAATATGGT-
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 28993150 30 + 149646834 GGGTTAGTAT-TACTGC-ATTGTGGGTATGGT-
|
|
i mm7.chr6 C 0 C 0
|
|
s bosTau2.chr4 19314114 32 - 69556449 GGCTTGGTTTCGATTTC-TTGGTGGATGGGTTT
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52851094 31 - 63938239 GGCCTGGTTTACATTCA-CT-GTGAGTGTGGTT
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_259847 159 32 + 4110 GGCTTGATTTGGGTTTC-ATTGAGGGCATGGTA
|
|
i dasNov1.scaffold_259847 C 0 C 0
|
|
s echTel1.scaffold_183183 4592 30 + 6931 GGGTTGGTTTGGTTCTCTGTTGATGGTACA---
|
|
i echTel1.scaffold_183183 I 1303 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e loxAfr1.scaffold_2979 16597 596 - 113413 I
|
|
e oryCun1.scaffold_194876 1664 2129 - 8791 I
|
|
|
|
a score=96725.000000
|
|
s hg17.chr7 127476097 110 + 158628139 GCCTTTACACTCCTG--TTTCTATAGTTTAAAGATAGTGGTGCTTTGGGAAAGTGACTCCTTAAATACAGTTAGGTCCAAGTGAGACA------AGTGGCCTGGCTGTCATTTCAGAA
|
|
s panTro1.chr6 129889951 110 + 161576975 GCCTTTACACTCCTG--TTTCTATAGTTTAAAGATAGTGGTGCTTTGGGAAAGTGACTCCTTAAATACAGTTAGGTCCAAGTGAGACA------AGTGGCCTGGCTGTCATTTCAGAA
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165792923 110 + 196418989 GCCTTTACACTCCTG--TTTCTATAGTTTAAAGATGGTGGTGTTTTGGGAAAGTGACTCCTTAAATACAATTAGGTCCAAGTGAGACA------AGTAGCCTGGCTGTCATTTCAGAA
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56186161 80 + 187371129 GCCCATATACTCC------TCTATGTCTTC------------CTCTGGG-AAGTGGTGCGTTAAATATGGTCAGATACCA-------------------CCGCGCTGCCTTGTGTGAA
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 28993180 61 + 149646834 GCCCTTACACTAC------TCTATGTCTTA------------CT---------GGGTGCATTAGATATG------------------------------CCACGATGCCCTGTGTACA
|
|
i mm7.chr6 C 0 C 0
|
|
s bosTau2.chr4 19314146 113 - 69556449 GCCTTCACACTCCAG--TTTCTATAGCTTAAAGAT-GTGGCACTTTGGAAAAGTGAATTCTTAAATACAGTTTGATCCAAGT--GACACTCAATGGTGACCTGGTTGTCATTTGAGAA
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52851125 106 - 63938239 GTCTTCCCATTCCAG--TTTCTAGAGCTTCAAGATGGTGGCATTTTGGAATTGTGAATCCTTACTTACAGCTGGATCCAA----GACA------AGCGGCCTGCTTGTCACTTGAGAA
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_259847 191 98 + 4110 GCCTTTATCCTACTC--TTTCTATAGTTTAAGGAT---GACACTTTAGAAAAGTGACTCCTTAAATATGGTTTGA---------AATA------AGCGACCTGGCTGTCATTTGAGAA
|
|
i dasNov1.scaffold_259847 C 0 C 0
|
|
s loxAfr1.scaffold_2979 17193 101 - 113413 GCCTTTACCCTCCTG--TTCTAACAGTTTAAAGATGGCGGCACTTTGGA-------TTCCTTATATGCATTCC--TCTGAGAGAGACA------AGTGGCCTGGCTGTCGTTTGAGAA
|
|
i loxAfr1.scaffold_2979 I 596 C 0
|
|
s echTel1.scaffold_183183 4622 102 + 6931 GCCTTTGCTGTCCTGGATTTTGTCA-TTTCAAGATGGTGGCGTTTTGGAAAA--GGGTCGCTAGCTGGA------TCTGAGAGAGTC-------AGCGGCCCGTCTGTCACCTGAAAG
|
|
i echTel1.scaffold_183183 C 0 I 40
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e oryCun1.scaffold_194876 1664 2129 - 8791 I
|
|
|
|
a score=23394.000000
|
|
s hg17.chr7 127476207 34 + 158628139 TAGCAGCTTCCAAGAGG----------TGATTAATTTCTGTTGG
|
|
s panTro1.chr6 129890061 34 + 161576975 TAGCAGCTTCCAAGAGG----------TGATTAATTTCTGTTGG
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165793033 34 + 196418989 TAGCAACTTGGAAGAGG----------TGATTAATTTCTGTTGG
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56186241 44 + 187371129 TTGCTACTTGGGAGAGGACAAGGCAATCAAGTCATTTCTATTGG
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 28993241 44 + 149646834 TTGCTGCTTGGGAGAGGACAAAGCAAGCCAGTCATTTCTATTGG
|
|
i mm7.chr6 C 0 C 0
|
|
s bosTau2.chr4 19314259 21 - 69556449 TAGCAGCCTTGGAGAGGATT-----------------------G
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52851231 40 - 63938239 GAGCAGTTTGGGAGAGGATGAAA----GGATTGATTTCTGCTAG
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_259847 289 18 + 4110 TAGCAGCTTTGGAGGTG--------------------------G
|
|
i dasNov1.scaffold_259847 C 0 C 0
|
|
s loxAfr1.scaffold_2979 17294 36 - 113413 TAACAGCTTT-GAGAGGATG-------AGATTCATTCCTGCTGA
|
|
i loxAfr1.scaffold_2979 C 0 I 39
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_183183 4724 40 + 6931 I
|
|
e oryCun1.scaffold_194876 1664 2129 - 8791 I
|
|
|
|
a score=179740.000000
|
|
s hg17.chr7 127476241 304 + 158628139 AAGGGTGAT-------CTTTGGGGAGGT--GG------GTGAAGAGCAGAGACTTGGTGGTACCGTTCCAGGAGCACAG------GCTCTCT-----TCCTTTGCA--GTGCAGAATGACCTCTGGCAGCCGGAGTT---GTGTTTGTTCTGTAGGATTCTGAGGTGG----GCCATGGGCAGCTGGAACTGGG-------GAATTTTGCCAATCTCTTTCATATTAGGATTGTCTGCAGAACCAGATATG-----GAGGC---TTCTAGCAACGTGAGTG-CT--CCTGTTCTAATGCCCTTAGAAACAAGAAGGCCACACTGATCATTTCTCTCACTTAGGCAGGGAGACAAGGC
|
|
s panTro1.chr6 129890095 304 + 161576975 AAGGGTGAT-------CTTTGGGGAGGT--GG------GTGAAGAGCAGAGACTTGGTGGTACCGTTCCAGGAGCACAG------GCTCTCT-----TCCTTTGCA--GTGCAGAATGACCTCTGGCAGCCGGAGTT---GTGTTTGTTCTGTAGGATTCTGAGGTGG----GCCATGGGCAGCTGGAACTGGG-------GAATTTTCCCAATCTCTTTCCTATTAGGATTGTCTGCAGAACCAAATATG-----GAGGC---TTCTAGCAACGTGGGTG-CT--CCTGTTCTAATGCCCTTAGAAACAAGAAGGCCACACTGATCATTTCTCTCACTTAGGCAGGGAGACAAGGC
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165793067 299 + 196418989 AAGGGTGAT-------CTTTGGGGAGGT--GG------GCGAAGAGCAGAGACTCGGTGGTACCGTTCCAGGAGCACAA------GCTCTCT-----TCCTTTGCA--GTGCAGAATGACCTCTGGCAGCCGGGGTT---GTGTTTGTTCTGTAGGATTCTGAGCTGG----GCCATGG--AGCTGGAACCGGG-------GAGTGTTCCCAATCTCTTTCCTATTAGGATTGTCTGCAGAACCAAATATG-----GAGCC---TTCTAGCAACGTGAGTG-CT--CCTGTTCTAATGCCCTTAGAAAC---AAGGCCACACTGATCATCTCTCTCACTTAGGCAGGGAGACAAAGC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56186285 299 + 187371129 GAGCATAGT------GTTCAGGGGAGGT--AG------GCAGAGGGCGGAGACTTGGTGGCACCATTGTGGGAGCATAG------GTTCTCTGGGCGTCCTTTGCAAGGTGGAAATGGACTTCCAGTAGTGAGAGTC---ATAATTTTTTTGTAGAGTTCTT-GGTGG----ACAGTGGTCAGCTGGGACTGGGG------GAGCATTTCTGAGCTTTTCCTGATCTGTATGGTACCTAGAACCAAACTTG-AGAAGAGGCA-TGTCTAACA--GTCAG-G-TC--ACTCTCCTGGAGAGTATA--------AGGACCACACTGATCATGTATTTCGTTGAGGCATGGA--------
|
|
i rn3.chr4 C 0 I 367
|
|
s mm7.chr6 28993285 289 + 149646834 GAGCATGGG------ACTCAGGAGAGGC--AG------GCAGAGGGCAGGGATTTGGTGGCACCATCCTGGGAGCATAG------GCTCTCTGAGCACTCTTTGCAAGGTGGGAATGGAATTCCAGTAGTGAGAGTC---ATA--TTTTTCGTAGAGTTTGT-GATGG----GCAGTGGTCAGCTGGGGCTGGGGG----AGAGCATCTCTGACCTATTGCTGATTTGTACGGTGCATGGAACCAAACTTG-AAAGGAGGCA-TGTCTAACA--------G-TC--ACTCTCCTGGTGACTATA--------AGGACCACACTGATCATGTATTTCATT-------------GAGGC
|
|
i mm7.chr6 C 0 C 0
|
|
s bosTau2.chr4 19314280 280 - 69556449 GAAGGTAGT-------CTGCAGGGGAGGCGAG------GCAGAGGGCAGGGACTGGAAGGC-AAGATGCAAGAGCTCAA------AGATTCC-----CCAC-------G------CTGTCCTCTGTCCAGCCTC-TG---GTGTTTGCTCTGTAGAG-CCTAAGGTGGCAGTGCAGTGGGCAGCTAGGACCAGGTGGGACAGAGGATATCCAGGCTC-TTCCCACCGGGACGGTGTGCAGAACCA-----------CAGTC-------------------G-CT--CCCACTCTGATGCCCTCCTGAGCAGGAAGGTCTTGCTGATCTTTTCTCTCATGCAGGCAGGGGGAGAAGGC
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52851271 287 - 63938239 AAGGGTGGT-------CTTTGGGGTGGGCAGG------GCAGAGGGCAGATACTTGTAGGC-CAGACCAAGGAGCATAGTTCCTTGCCTCCC-----CCTT-------GTAGGACCTAACCACTGTCATCCCTC-TT---AAGTTC-CCCTGTAGAGTTCTGAGGTGG----GCAGCAGTGAGCTGGGACTA-GTGGGAGAGA-GATACCCAATCTCTTTCCCACCAGGTTGGTCTGCAGAACCA-----------TAGTC-------------------G-CT--GCCATTCTAACGTCCTCATGAGCAGAGATGTCAAGCCAATCATTTCTCTCACTTAGGTAGGGGGAGAAGGC
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_259847 307 308 + 4110 CAGGGCAATGACCTGGTTACGTGCAGGT--GAAAAGCCGGAAAGGGCAGGGGCTTGATGGTGCCACCCCAAGAGCAGAA------GCTCGCTGGCCGTCCTTTGCAGGGTAGGGATTTATGTCTGTCCTCGCGCATG-------TTGTTCTGTAGTGCTCTGAGGGGG----ACAG------GTTGGGGA-----------GAGGTCCCCCAGTCTCTTTCCCACCTGAGTACTCTGCAGAACCAAACCCCCAAGGAAGGCAGCTTTTAACAGGCCGGTCC-CT--CCCATCCCAACGCCCTCATGAACGGAGAGGCCAGGCCAAGCAT----------TAGGCAGGGGGAGAAGCC
|
|
i dasNov1.scaffold_259847 C 0 C 0
|
|
s loxAfr1.scaffold_2979 17369 312 - 113413 ATGTGCTGT-------CCATGAGAAGCT--GG------G---CAGGCAGGGGACTGGCGGAGCCA-CCCAAGAGCACGG------GCTCGCGAACTGCCCTTTGCAGAGTAGAAACTGACCTCTGCTGCCTCTGGTG---GTTTCC-TTCAATAGAGTTCTGAGATGG----GCAGTGGTTTGCCGGGACTGGTGGAGGA-AGGGGCACCGCATTTCTTTCCTACCAGGAGGGTTTGCAGAACCAAACATCCAAGGAGGGTGGTTTGTAACA--------GCCCAGCCTGTCCCATTCCACCCATGAATGGAAAGGCCAGGCTGACCACTTATCTCTTGTAGGTAGAAAGAAAA---
|
|
i loxAfr1.scaffold_2979 I 39 I 207
|
|
s echTel1.scaffold_183183 4764 318 + 6931 ACGAGCCAC-------CTGGGGGAAGCT--GG------AT--TCAGCAGGGGGCTTCCAGAACCAGCCCAGGGGCACAG------GCTCGCCAGCTGCCCACGGCCGAGTAGGAATGCCTCTTGGTGGTCTCTCATGTCTATCTCC-TCACATAGCGTTCCCAGATGG----GCAGTGGCCCACTGGGACCAGTCAGGGA-GAGGGTTCC-CCTCTCTTTCCTTTGAGGAAGCTCTGCCGAACCACACACCCAAGGAGGGCGGTTTGCAATA--------G-CCAGCCTATCCCTCCCCATCCATGGACAGAAAGGCTGAGCTGACCAGCCATCCCGTGTGGGCAGGAGAGGAAACC
|
|
i echTel1.scaffold_183183 I 40 I 51
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e oryCun1.scaffold_194876 1664 2129 - 8791 I
|
|
|
|
a score=-6697.000000
|
|
s hg17.chr7 127476545 10 + 158628139 AAGAGAG------------------------------------------------------------AAA
|
|
s panTro1.chr6 129890399 10 + 161576975 AAGAGAG------------------------------------------------------------AAA
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165793366 10 + 196418989 AAGAGAC------------------------------------------------------------AAA
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 28993574 10 + 149646834 ACGAGAG------------------------------------------------------------AAG
|
|
i mm7.chr6 C 0 I 19
|
|
s bosTau2.chr4 19314560 10 - 69556449 ATGAGAA------------------------------------------------------------AAG
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52851558 10 - 63938239 AAGAGAA------------------------------------------------------------AAA
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_259847 615 9 + 4110 A-GAGAC------------------------------------------------------------CCG
|
|
i dasNov1.scaffold_259847 C 0 C 0
|
|
s loxAfr1.scaffold_2979 17888 10 - 113413 GAGTGAA------------------------------------------------------------AAA
|
|
i loxAfr1.scaffold_2979 I 207 C 0
|
|
s echTel1.scaffold_183183 5133 70 + 6931 GAGTGGAACTGTAGGCTGAGAGGTCTTCAGGGGCTGGGTTTCAAGAAGATCTCCAGAATTTCTTCCGAAG
|
|
i echTel1.scaffold_183183 I 51 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e rn3.chr4 56186584 367 + 187371129 I
|
|
e oryCun1.scaffold_194876 1664 2129 - 8791 I
|
|
|
|
a score=682002.000000
|
|
s hg17.chr7 127476555 280 + 158628139 CAGT---GGATGCTTTTAGGTTCTTTCCCTT--CCC------------------------------------------------------------------------AAGCA-GTTGTGGACATTGGGCTGA-GGGGAACATTTCCACATTGGCTAAAGGAGCGTCCTCCTCATATTTTGTACATTTTATACCCAA--AATAA-CTCTTCTTGGTATTT-GGGGAAATATTTTC-CT------------CCCCGTCC-ATTCCAGGAAATGGCTCCAAGTGC-CAAGGACAGAGCCAGGGAA--GTTGCAATGAATTCCTGCCCGTCAGCCCCAGGCAGATGCCTTGCACGTCTGAGTGGCCCATGCAGAGCGTGGAGG
|
|
s panTro1.chr6 129890409 280 + 161576975 CAGT---GGATGCTTTTCGGTTCTTTCCCTT--CCC------------------------------------------------------------------------AAGCA-GTTGTGGACATTGGGCTGA-GGGGAACATTTCCACGTTGGCTAAAGGAGCGTCCTCCTCATATTCTGTACATTTTATACCCAA--AATAA-CTCTTCTTGGTATTT-GGGGAAATATTTTC-CT------------CCCCCTCC-ATTCCAGGAAATGGCTCCAAGTGC-CAAGGACAGAGCCAGGGAA--GTTGCAATGAATTCCTGCCCGTCAGCCCCAGGCAGATGCCTTGCACATCTGAGTGGCCCATGCAGAGCGTGGAGG
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165793376 280 + 196418989 CAGT---GGATGCTTTCAGGTTCTTTCCCTT--CCC------------------------------------------------------------------------AAGCA-GTTGTGGACATTGGGCTGA-GGGGAACTTTTCCATGTTGGCTAAAGGAGCATCCTCCTCATATTTTGTACATTTTATACCCAA--AATAA-CTCTTCTTGGTATTT-GGGGAAATATTTTC-CT------------CCCCCTCC-ATTCCAGGAAATGGTTCCAAGTGC-CAAGGACAGAGCCAGGGAA--GTTGCAATGAATTCCTGCCCGTCAGCCCCAGGCAGATGCCTCACACGTCTGAGTGGCCCATGCAGAGCGCGGAGG
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56186951 285 + 187371129 CAAT---AACTCTTTTTGGGTTCTGTCCTTC--CTC------------------------------------------------------------------------AAGCA-CTCAAGGACACTGGGCTGAGGGGGAACATGCCCATGTTGACTAAAGAAGCATCCTTCTCATATTTGGTAGATCTTATACCCAAGTAACAAGCTCTTCTTGGTATCTGGGGGAAATATTTTC-CT------------CCCCCTGT-GTTCCAGGAAAAAGCTCAAAAAGC-CAAAGACGGAGCCAGGAAC--GCTGCAATAAATTCCTGTCCATCAGCCCCAGGCAGATGCCTCGCATGTCTCGGTGACCCATGTGGGACGCAGAGA
|
|
i rn3.chr4 I 367 C 0
|
|
s mm7.chr6 28993603 295 + 149646834 CAGA---CTTCTTTTTTTGGTTCTTTCCTTT--CTC------------------------------------------------------------------------AAGCA-CTCAA-GATACTGGGCTTA-GGGGAACATGCCCGTGTTGGCTAAAGAAGCATCCTTCTCATATTTGGTAGATCTCAAACCCAAGTAACAAGTTCTTCTTGGTATCTGGGGGGAATATTTTC-CTCCTTCCCCCCCACCCCCCGT-GTTCCAGGAAAAAGCTCAAAGAGC-CAAGGACAGAGCCAGGGAT--GCTGTAATAAATTCTTGTCCATCAGCCCCGGGCAGATGCCTCGCATGTCTGAGTGACCCATGTGGGATGCAGAGA
|
|
i mm7.chr6 I 19 C 0
|
|
s bosTau2.chr4 19314570 280 - 69556449 CAGT---GGGTGTGGCTCAGTTCTTTGCTTT---TC------------------------------------------------------------------------AAGCA-GTTGAGGACATTGGGCTGA-GAGGAACGTTTCCATGTTGGCCAAAGGAGCATCCCTCTCGTATTTTGTACATCTTATGCCCAA--AATAA-CTCTTCTTGGTATTTGGGGGAAATATTTTC-CT------------CCCCCTCC-ATTCCAGGAAATGGCTCCAAGCGC-CAAGGACAGAGCCAAGGAG--ATTGCAATGAATTCCTGCCCGTCAGCCGCAGGCGGATGCCTCTCGAGTCTGAGTGGCCTGTGCAGGGTGTGGAGG
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52851568 280 - 63938239 CAGT---GAATGTTTTTAGGTTCTTCCCTTT---TC------------------------------------------------------------------------TAGCA-ATAGAGGACATTAGGCTGA-GGGGAACGTTTCCATGTTGGCCAAAGGAGCGTCCTTCTCATATTTTGTACATCTTATGCCCAA--AATAA-CTCTTCTTGGTATTTGGGGGAAATATTTTC-CT------------CCCCCTCC-GTTCCAGGAAATGGCTCCAAGCGC-CAAGGACAGAGCCAGGGAG--ATTGCAATGAATTCCTGCCTTTCAGCCGCAGGCAGATGCCTTTCATGTCTGAGTGGCCTGTGCAGGGTGTGGAGG
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_259847 624 285 + 4110 CAGG---GGAGGC-CTGGGGTTCTCTCCTTTTTTCC------------------------------------------------------------------------AAGCA-GTTGAGGACCTTGGGCTGA-GGGGAATGTTTCCATGTTGGCCAAAGGAGCATCCTTCTCATATTTTGTACATCTCATGCCCA---AATAA-CTCTTCTTGGTATTTGGGGGAAATATTTTCTCT------------CTCTCTCCTGTTCTGGGAAATGGCTCTGAGCACTCAAGGACAGAGTCTAGGAAAGATTGCGTTGAATTTCTGCTCGTCAGCTCTGGGCGAATGCCTGG-GTGACTGAGTGGCCAAAGCCAAGTGCAGGGG
|
|
i dasNov1.scaffold_259847 C 0 M 2319
|
|
s loxAfr1.scaffold_2979 17898 277 - 113413 CAGC---GGATGCATATAGGTTCTTTCCTTT---TC------------------------------------------------------------------------AAGCATATCGAGGACACTGGGGTGA-GGGGAACATGTCCATGTTGGCCAAAGGAGCGTC---CTCGTATTTTGTACATCTTATGCCCAA--AATAA-CTCTTCTTGGTATTTTGGAGAAATATTTTC-CT------------CCCCCTCT-GTTCCAGGAAATGGCTCCAAGTGC-CAAGGAAAGAGCCAGGGAG--ATTGCAGCGAATTCCTGCCCATCGGCCCCAGGCAGATGCCTTGCATGGCTGAGTGGCCCATGCAG-GCTCGAAGG
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s echTel1.scaffold_183183 5203 339 + 6931 CACCTCAGGGTGGACTCAAGTGGCCACCCTC---TCAGTTAGCTGCCCCTCCCGGGCCTCTGGGCAGGAGGGCATCACTGTGGTGGCAGGTCCCCCATTCCCTTTTGCAAGCATTCCGAGGACGCTGGCT----GAGGAACGGGACCATGTTGGCCAAAGGAGCGCCCTTCTCCTAGTGTGCACATCTTTTGCCCAA--AATAA-CTCTTCCTGGTATTTTAGGGTCATGAGTTC-CT------------CCCCCTCC-ATTCCAGGAACTGGCTCCAAGTGC-CCAGGACTGAGCCAAGGCG--GTTGCAACGG-------------GGTGCCAGGCAGATGCCTCCAGTGGCTGAGTGACCCGTGCAG-GAATGGTGG
|
|
i echTel1.scaffold_183183 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e oryCun1.scaffold_194876 1664 2129 - 8791 I
|
|
|
|
a score=75835.000000
|
|
s hg17.chr7 127476835 100 + 158628139 TGGCCGCC----------------ACGGAA-C------------CTGGGTC-AATGT-CCCACCCCCG------CTTAGATGCCAC-CAGGGG--CGTGGGAGCCAAG--------------GAG--AGAAG-AGGGGCTCCAGGAAGGTAGAGTCC
|
|
s panTro1.chr6 129890689 104 + 161576975 TGGCCGCC----------------ACGGAA-T------------CTGGGTC-AATGT-CCTACTCCCGCCCA--CTTAGATGCCAC-CAGGGG--CGTGGGAGCCAAG--------------GAG--AGAAG-AGGGGCTCCAGGAAGGTAGAGTCC
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165793656 99 + 196418989 TGGCCACC----------------ACGGAA-C------------CTGGGTC-AATGT-CCCACCCCCA------CTTAGA-ACCCC-CAGGGG--CGTGGGAGCCAAG--------------GAG--AAAAG-AGGGGCTCCAGGAAGGTAGAGTCC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56187236 121 + 187371129 TGGCTGTCCCAGACGATTCCCTTTACGCAGCC------------ATCAGTC-TCTGT-TGCACCCCAG------CCTGCATCCCCC-TACAGGCACATGGGGGACAGG--------------GAGATAGAGC-AGGGTCTCCAGGAACACAGAATTC
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 28993898 122 + 149646834 TGGCTGCCGGAGACAATTCCCTTTACAGAG-C------------ACCAGTC-ATTGT-TGCACCCCATAC----CCTGTATCCCTC-TAGAGGCACATAGGATACAGG--------------GAGATAGAGC-AGGGTCTCCAGGAACATGGAATTC
|
|
i mm7.chr6 C 0 C 0
|
|
s bosTau2.chr4 19314850 121 - 69556449 TGACCGCT--------------TGGGAGAA-C------------CTGGGTC-TTTGTCCCCACTCTAG------CCTCGATGCCACTTAGGGGGACGTGGTGGTGGTGGTCAGTGGGAGTCAGAG--AGAGATTAGGGCTCCAGCGATGGGGAATCC
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52851848 118 - 63938239 TGGCCACT--------------TGGGAGAG-CTCTACTCACAGACCCAGTC-ATTGTCCCCGCTCCAG------CCTAGATGTCACCCAAGGGGATGAGGGGGTTGAG--------------GAG--AGAGA-TAGGGCTTCAGGGAAGTGGAGTCC
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 18175 126 - 113413 TGGCTGCCTGGGAGAGCTGTCCTCATAGAA-C------------CCTGGTC-ATTGT-CCACCACTCCCCTCAGGCTAAATGTCACCCAGGGGAGCGTGGGGATCAGG--------------GAG--AGAGAAAGGGGCTCCAGGGAGGTAAAGACC
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s echTel1.scaffold_183183 5542 122 + 6931 CGGCCCCTTGGGAGAGCTCTCCTCACAGAG-C------------CCCAGTCGGTTAT-CCAACCCCTCCCTC--GCTAAATGCCTCCCAAGGCAGCATGGAGGTCCGG--------------GAG--AGAG---GGGACTGCAGGGAGGTAGAAGCT
|
|
i echTel1.scaffold_183183 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e dasNov1.scaffold_259847 909 2319 + 4110 M
|
|
e oryCun1.scaffold_194876 1664 2129 - 8791 I
|
|
|
|
a score=41144.000000
|
|
s hg17.chr7 127476935 75 + 158628139 TTGTGTCTTGTGCATCT-GTGAACAGCACTGGTATGATTTAAAGGAAAATTGAGCCAAATTTTC---CGG----CAGTCAGTT--------
|
|
s canFam2.chr14 52851966 75 - 63938239 TTGGGAGGTATGCATCC-ATGAACAGCATGCGTGTGATTTAAAGGAAAATTGAGCCAAATTGTC---TTG----CAGTCAATC--------
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19314971 79 - 69556449 TCATAGTGTGTGTATCC-TTCAACCACATGCATGTAATTGAAAGGAAAACTGAGCCAATTTCTC---CTGTAGTCAGTCAGTC--------
|
|
i bosTau2.chr4 C 0 C 0
|
|
s mm7.chr6 28994020 22 + 149646834 TTGTGGGGTGGATATC--------------------------------ATTGAG-------------------------------------
|
|
i mm7.chr6 C 0 C 0
|
|
s rheMac2.chr3 165793755 75 + 196418989 TTGTGTCTTGTGCATCT-GTGAACAGCACTGGTGTGATTTAAAGGAAAATTGAGCCAAATTCTC---TGG----CAGTCAGTT--------
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129890793 75 + 161576975 TTGTGTCTTGTGCATCT-GTGAACAGCGCTGGTATGATTTAAAGGAAAATTGAGCCAAATTCTC---CGG----CAGTCAGTT--------
|
|
i panTro1.chr6 C 0 C 0
|
|
s loxAfr1.scaffold_2979 18301 82 - 113413 -TGTGGTGTGTGCATCC-TTGAATGGTTTGCGCGTGATTTCACGGAAAATTGAGCCAAATTCTC---TGG----CAGGCAGGCAGACAGTA
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s echTel1.scaffold_183183 5664 84 + 6931 -GGTTGTGTGTGCGTCCTTTGACCGG--TGCGAGTGGCTGCATAGCAAATGGAGCCAAAGCCTCGGGTGG----TGGACAGGGGGGTATTG
|
|
i echTel1.scaffold_183183 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e dasNov1.scaffold_259847 909 2319 + 4110 M
|
|
e rn3.chr4 56187357 0 + 187371129 C
|
|
e oryCun1.scaffold_194876 1664 2129 - 8791 I
|
|
|
|
a score=51269.000000
|
|
s hg17.chr7 127477010 72 + 158628139 A-----CCCCATCCCCACCGG-GGTAGGAGTCTGGCAGCCGCAGCTCCATTCTGGCCAGTCGGCAGAGAGCCTTGAAA
|
|
s panTro1.chr6 129890868 72 + 161576975 A-----CCCCATCCCCACCGG-GGTAGGAGTTTGGCAGCCGCAGCTCCATTCTGGCCAGTCGGCAGAGAGCCTTGAAA
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165793830 72 + 196418989 A-----CCCCATCCCCACCGG-GGTAGGAGTCTGGCAGCCGCAGCTCCATTCTGGCCGGTTGGCAGAAAGTCTTGAAA
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 28994042 29 + 149646834 -----------------------------------------------CATTCTGGCCCATGGAC--ACAGCCTTGGAA
|
|
i mm7.chr6 C 0 C 0
|
|
s bosTau2.chr4 19315050 77 - 69556449 AGTAGGCCCTGTTCCCACCAGCAGTAGGAGTCCAGTGGCGACAGCGCCCTCCTGGCCTGTGAG-CCAGAGTCTTGGAA
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52852041 77 - 63938239 AGTAGACCCTGTCCTTCCCAGCAGTAGGGTTCCA-TGGCAGCAGCTCCGTTCTGGCCTGCCAGCCCAGAGCCTTGAAA
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_102887 5422 72 - 10616 -----ACCTCTTCCTCACCAGTGGTAGGATTCCAG-AGCTGCGACTCCATTCTGGCCTGCCAGTGGAGAACGTTGAAA
|
|
i dasNov1.scaffold_102887 M 1299 C 0
|
|
s loxAfr1.scaffold_2979 18383 70 - 113413 ------GGCCTGTCCCATCAGGGGCAGAATTCCAGTGGCTGCAGCTCCGTCCTGGCCTG--AGCAGAGAGCCTTGACA
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s echTel1.scaffold_183183 5748 50 + 6931 ------GGCCTCCTCCATGGGGGGTGGGATTCCAGTAGCT----------------------GCAGAGCATGTAGATG
|
|
i echTel1.scaffold_183183 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e rn3.chr4 56187357 0 + 187371129 C
|
|
e oryCun1.scaffold_194876 1664 2129 - 8791 I
|
|
|
|
a score=144517.000000
|
|
s hg17.chr7 127477082 200 + 158628139 TTCTTCTTTGTCCACACAGTTGTCTCAGAGAAACAGAG--AGG------------TT-GTT-------------TCTGCTTAAA--AACAACACACT-TGGTGTCTGGGCCCAC-AGACTCCTTTGCACTTATTCCACGTGTGACAGCCAAT---GTGCCTCGTTGCTTAGCAGACAGCATGTTACCGTCTTTCCTGCTCAGTTTGT----------------TAGCTCT----ATGGAATGGAATTTATAATCA
|
|
s panTro1.chr6 129890940 200 + 161576975 TTCTTCTTTGTCCACACAGTTGTCTCAGAGAAACAGAG--AGG------------TT-GTT-------------TCTGCTTAAA--AACAACACACT-TGGTGTCTGGGTCCAC-AGACTTCTTTGCACTTATTCCACGTGTGACAGCCAAT---GTGCCTCGTTGCTTAGCAGACAGCATGTTACCATCTTTCCTGCTCAGTTTGT----------------TAGCTCT----CTGGAATGGAATCTATAATCA
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165793902 197 + 196418989 TTCTTC---GTCCACACATTTGTCTCAGAGAAACAGAG--AGG------------TT-GTT-------------TCTGCTTAAA--AACAACACACT-TGGTGTCTGGGCTCAC-AGACTCCTTTGCACTTATTCCACATGTGACAGCTGAT---GTGCCTTGTTGCTTAGCAGACAGCATGCTACCGTCTTTCCTGCTCAGTTTGT----------------TAGCTCT----CTGGAATGGAATCTATAATCA
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 28994071 169 + 149646834 ---TTCTCTCTCCATACATTTGCCTTCCAGAAATGCAG--AGG------------TTAGAC-------------TATAAGGAAA--GACAGGGCACT--------CAGATACACCAGGCAGATCAGCGCTTGCTTCCCATG-----------------CCCTGCTCTACAAAATACTGCATGATCCCATCTCTCCTGCT--GTCTGT----------------GAGCTCT----CTA------GATCTACAATC-
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56187357 186 + 187371129 TTCTCCTCTGTCTATCCAGTTACCTCCAAGAAATGCAG--AGG------------TTAGAT-------------TAGAGGGGAA--GACGAGGCACT--------CGGATACACTAGGAGGCTCAGCAC-TGCTCCCCATGGGAAGGCAGAT---GTCCCCCACTCTACAGAAAACTGCCTGTTCCCATCTCTCTTGCT--GCCTGT----------------GAGCTCT----CTG-----TGATCTACAATC-
|
|
i rn3.chr4 C 0 C 0
|
|
s bosTau2.chr4 19315127 191 - 69556449 TTCTTCTTTGTCCACACAATTGTCTCAGAGAAGTAGAA--AGG------------AT-GTT-------------TCGGCTTAAA--AACAACACACC-TGCCACCTGGGCCCAC-AGAATCCTTTGCACTT----CGTGTGTGACAACAGAT---GTACCTTGCTTCTCAGCAATCGGCATTTTACAGTGTTTCCTGCTCCATTCATCCAT------------CAGCTCT----CTG------GA---ATGATCG
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52852118 203 - 63938239 TTCTACTTTGTCCACACAGTTGTCTTAGAGAAGTAGAAAGAGG------------TT-GTT-------------TCTGCTTAAA--AACAGCACACC-TGATGCCTGGGCTCAG-GGAGTTCTTTGTGCTTATTCTATGTGTGACAACAGAT---GT-------------GCAAACTGCATTTTACAAGCTTTCCTGCTCAGTTTGTCAGTATCCCCCCTGCCCCGCTCCAGAACTG------GATTCGTGCTCG
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_102887 5494 213 - 10616 TTCTTGTTTGAACACACACCTGACTCAGAGAAACAGAA--AGAGAGATGACTGCCCT-GTT-------------TCCATTCTACTTTATAACACATC-TGATGC-TGGGCCCCC-AGAGTTTTTGACACTTATTACGTGTGTGAAATCAGAT---GCACCTTGCTTCTTGGCAAACTGCAACTTGTGACTTCTCCTGCTCAGTTTGT----------------TAGCTCT----CTGGAACCGAATCTATAGCCA
|
|
i dasNov1.scaffold_102887 C 0 C 0
|
|
s loxAfr1.scaffold_2979 18453 193 - 113413 ----TTCATGTCCACACAGTTGCCTCTGAAACAGCAAGAGAGG------------TG-GCTGCCCTCTTTCCCTTCTCCTTACA--ATCA--ACACTTTGGCCCCTGAGCTC-C-AGAATAC--GGCACTCATGATGTGTGTGGAGACAGATGTGAAAACTGCCTTT-------ATAGTC----------TTCCCTGCTCCGTTTGT----------------TAGCCCC----CCAGGATGGAATCTATACTCA
|
|
i loxAfr1.scaffold_2979 C 0 I 1817
|
|
s echTel1.scaffold_183183 5798 159 + 6931 ----CACATGTCCACAGAGTTGTCCCAGAGAACTGGGGACATG------------TT-GCT---------------------CA--GTCAGTACACTGTG---CCTGAGCCC-T-AGA---------ACCCATGACATGTAAGAGCACAGAC---CAGCCTGGCTTCCCAGCGAACAGCCTCCCCTAG--TTCCCTGCTCCATCTGT----------------TAGCCTC----GGGG-----------------
|
|
i echTel1.scaffold_183183 C 0 I 54
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e oryCun1.scaffold_194876 1664 2129 - 8791 I
|
|
|
|
a score=97359.000000
|
|
s hg17.chr7 127477282 91 + 158628139 ATGCCCATACCAACATTTCACTAATATCATAGGAGATTTAGTCTCCATCTGGGTGTACATTACATTTG--CTCTGGGG-TGCTCCAGGCT-GGGG
|
|
s dasNov1.scaffold_102887 5707 92 - 10616 GTGTCAATGCCGACATCTCACTGATACCACAGAGGATTTAGTCTCCTTCCGTGCACACACTGCTTTTGTCCTCTGGAG-TACCCCAGGCT-GGC-
|
|
i dasNov1.scaffold_102887 C 0 C 0
|
|
s canFam2.chr14 52852321 93 - 63938239 GTGCCAATGCCGACATCTCACTGATTTCATTGAAGATTTCATCCCCACCTGTGTGCACATTGTGCTTGTAGTCTGGGGATGCACTGGGCT-GGG-
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19315318 92 - 69556449 GTGTCGATGCTGATATCTCATCCATCCCACAGAAGATTTCATTCCCATCT-TACACATACTGAGTTTGTACTCTAGGG-TACTCCAGACT-GGGT
|
|
i bosTau2.chr4 C 0 C 0
|
|
s rn3.chr4 56187543 85 + 187371129 ATGTCCGTGCTGACATTTCACCAAAACCAT---AGACTAAGTCTCCATCTGTGTGCACATTGCCTTTG--CCCTCAGG-AGAACCAC----AGAG
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 28994240 85 + 149646834 ATGTCTGTGCTGACATTTCACCTAAACCAA---AGACTAAGACTCCATCTGTGTGCGCATTGTCTTTG--CCCTCAGG-AGTACCAC----AGAG
|
|
i mm7.chr6 C 0 C 0
|
|
s rheMac2.chr3 165794099 92 + 196418989 ATGCCCATACCAACATTTCACTAATACCATAGGAGATTTAGTCTCCATCTGGGTGTACATTACATTTG--CTCTGGGG-TGCTCCAGGCTGGGGG
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129891140 91 + 161576975 ATGCCCATACCAACATTTCACTAATATCATAGGAGATTTAGTCTCCATCTGGGCGTACATTACATTTG--CTCTGGGG-TGCTCCAGGCT-GGGG
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_183183 5957 54 + 6931 I
|
|
e loxAfr1.scaffold_2979 18646 1817 - 113413 I
|
|
e oryCun1.scaffold_194876 1664 2129 - 8791 I
|
|
|
|
a score=110713.000000
|
|
s hg17.chr7 127477373 285 + 158628139 GGTTGCCAAGGAAGAGAAGA----GAAACCGCAGAGAAGAC---GGGAGGGCAGGGCAGGGGTCTCTGAGAAGGGGAGGGGTCCCAGAGTGCAGGAGCAGGAGCCAGGC---------TCATGAAAGGGGCCACGGGCGGGAGTATCCAGGGACGGCAGTCAAGATGGAGCACAGCTTAGGAAGCTGAA-GGGAATCCTGGCCCACCTGGGTGC-------------TAGAGGGCACATAGGAAGTGCAGGAAGCAGACCAAGGTCCCCAAGAGAGGGAGACCTGGACGCTGAAGCATTTTCTGTCTTTATTAAG
|
|
s panTro1.chr6 129891231 285 + 161576975 GGTTGCCAAGGAAGAGAAGA----GAAACTGCAGAGAAGAC---GGGAGGGGAGAGCAGGGGTCTCTGAGAAGGGGAGGGGTCCCAGAGTGCAGGAGCAGGAGCCAGGC---------TCATGAAAGGGGCCACGGCGGGGAGTATCCAGGGACGGCAGTCAAGATGGAGCACAGCTTAGGAAGCTGAA-GGGAATCCTGGCCCACCTGGGTGC-------------TAGAGGGCACATAGGAAGTGCAGGAAGCAGACCAAGGTCCCCAAGAGAGGGAGACCTGGACACTGAAGCATTTTCTGTCTTTATTAAG
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165794191 285 + 196418989 GGTTGCCAAGGAAGAGAAGA----GAAACCGCAGAGAAGAT---GGGAGGGCAGAGCAGGGGTCTCTGAGAAGGGCAGGGGTCCCAGAGTGCAGGAGCAGGAGCCAGGC---------TCACGAATGGGTCCATGGGAGGGAGTACCTAGGGATGACAGTCAAGATGGAGCAGAGCTTAGGAAGCTGAA-GGGAATCCTGGCCCACCTGGGTGC-------------TAGAGGGCACATAGGAAGTGCAGGAAGCAGACCAAGGTCCCCAAGAAAGGGAGACTTGGACACTGAAGCATTTTCTGTCTTTATTAAG
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 28994325 252 + 149646834 TTCTGC-----------AGG----GAAGCCACACAATAGGCATAGGAAGCTCAGTATTGGGTTCCTTGGCAAAGACAGGGCACCTAGAGTGCTGGAAATGGA--CAGACATAGAATGGAAATAGACGGGTTGGTGGTGGGGAGTCACTGGGAATAACAGTGCACAC--AGCAGAGGTAAG---ACTGAA-AGGAAT-CAGAACTAGGTAGGCAG-----------------GGATACAGGAGAGATGT-GGAG----------GCTTTGGAGGGAGAGAAAGACAGGCACTGGAGCACTTTA-----------AG
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56187628 236 + 187371129 TTCTGC-----------AGG----GAAGCCACAAAGTAAGCAGTAAGAGATCAGCA-TGGGTCCCTTGGCAAAGACAGGGCACCTAGAGCACTGGAAATGGA--CAGCT----------CGTGGAGGGGTGTGTGGTGGGGAGTCACTGGGAATGACAGTCCACAC--AGCA-------------------------CAGAACTATGTAGGTGGGGGCGGGGGGGAGGGGAGGATACAGAGGAGATGT-GGAGGCTCTCCAAAGCTTTGGAGGGAGAGAAAGC------------TACGTTA-----------AG
|
|
i rn3.chr4 C 0 C 0
|
|
s bosTau2.chr4 19315410 266 - 69556449 G--TGCCAAAGAAGTGGA------GAAGCCACAGGGAAGAG----TCTGAGCAGAGCAGAGACCTCTGAGAAGGGCAGGAGGCCCAGAGCACAGTAAGAGGAGCCAGGC---------TGATGAATGGGACCAAGACAGGGAGTATCT-GGGACAATAGTTAAGATGGAACAGAATTCAGGAAGCTGAATGGGAATAGGGGCCCATGT-AGTGT-------------TAGAGGACACCTGTGGGGTACAAGACA-------------CCGTGAAAAGGAGATCAGGATTCTGCAGCATTTTCTGTCTTCATTAAG
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52852414 223 - 63938239 --------GAGGAGTGCAAAGGCGGGGGCTACAGAGAAGAA-------AAGAGGGAGAGGGGTCTCTGAGGAGGGCAGGAGGCCCAGAGC-----AGCTGGAGCCAGGC---------TGATGAATGGAACTA---------------------------------------------AGGAAGCTGAA-AGGAATGGGGATCCACAT-GGTGC-------------TGGAGGACACATAAAAGGTGCAGGAAGCCAACCAAGAGACCCGTTAAAGGGAGATGTGGAAGCCAAAGTGATTTCTA---TCATTAAG
|
|
i canFam2.chr14 C 0 I 196
|
|
s dasNov1.scaffold_102887 5799 207 - 10616 ------------------------G-----------------------------------------------GGGCAGGAGGCGCGGA-------------AGCCGGGC---------TCAGGAATGGGTCCAAGGCAGGGGG-GCCTGGGGACATCAGCCAAGGTGGAGCAGAGCCCAGGAACCTGAT-GGGAACCTTGGCCTGCTTGGGTGG-------------CAAGGGACACCTAGGAGGTGCAGCAAGGAGACCGAGGCCTCCGTGAGAGGAAGACCTGGATATTGAAGAGTTTCCTGGCTTCTTTTAA
|
|
i dasNov1.scaffold_102887 C 0 C 0
|
|
s echTel1.scaffold_183183 6011 200 + 6931 ACTCCCCACCGCAGAGCAGC----GAAGCCACAGGGCAGGG-------------------------------CAGGAGCAGCCCTGGAG------GTCAGGATCCAGGC---------TCAAGGATGGGGCCAAAGCAGGA---CACCCTGCATGCCAGCGAAGGCAGAGGTGAGCTCAG-ACGCTGAA-GGGGCATGGGGTCCACGTGGACTG-------------------------------------------ACCA----------------GAACCCTGGCCATTGGAATCTTCCTCTCCTTCTTGGA-
|
|
i echTel1.scaffold_183183 I 54 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e loxAfr1.scaffold_2979 18646 1817 - 113413 I
|
|
e oryCun1.scaffold_194876 1664 2129 - 8791 I
|
|
|
|
a score=94945.000000
|
|
s hg17.chr7 127477658 45 + 158628139 ACAACTCCGTAAGAATTCCTGCTGGGCCAAAGTGAATTCTAGGAT
|
|
s panTro1.chr6 129891516 45 + 161576975 ACAACTCTATAAGAATTCCTGCTGGGCCAAAGTGAATTCTAGGAT
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165794476 45 + 196418989 ACAACTTCATAAGAATTCCTGCTGGGCCAAAGTGAATTCTAGGAT
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56187864 45 + 187371129 ACAGTCTCTTAGGTACTTCTGTTGGGCACAAGTAAATTCTAAAAT
|
|
i rn3.chr4 C 0 I 103
|
|
s mm7.chr6 28994577 45 + 149646834 ACAGCTTCTTAGGTATTTCTGTGGGGCAAAAGTAAATTCTAAAAt
|
|
i mm7.chr6 C 0 I 103
|
|
s oryCun1.scaffold_194876 3793 45 - 8791 ACAACTTCTTGGGAATTCCTTCTGGGCAAAAGTGAATTCTAGGCT
|
|
i oryCun1.scaffold_194876 I 2129 C 0
|
|
s bosTau2.chr4 19315676 44 - 69556449 AAAGCTTCTTAGGAATTCCTGCTGGGCAAAACTGAATTCTA-GAT
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52852833 45 - 63938239 aTAATTTCCTAGGGATTCCTGCTGGGCAAAAGTGAATTCTACGAT
|
|
i canFam2.chr14 I 196 C 0
|
|
s dasNov1.scaffold_102887 6006 42 - 10616 AAAG---CGTAGGAATTTCTGTTGGGTGAAGGTGAATTCTAGGAT
|
|
i dasNov1.scaffold_102887 C 0 C 0
|
|
s echTel1.scaffold_183183 6211 40 + 6931 AAAGCATCTTAAGAATGTGTCCTGGGCTCA--TGAACCCCAG---
|
|
i echTel1.scaffold_183183 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e loxAfr1.scaffold_2979 18646 1817 - 113413 I
|
|
|
|
a score=195259.000000
|
|
s hg17.chr7 127477703 145 + 158628139 GCGA-CTTTAAGATGGGAGCAAGCGAACCATTGAGGAGGCAGGTTACCCTAGTTAGCCAATGCAGATCGAGAATGGGAAATCTTTCatttattcatgcaacagatatttaacgaagccctgccgtgttccaggcctgt--gatagatg
|
|
s panTro1.chr6 129891561 145 + 161576975 GTGA-CTTTAAGATGGGAGCAAGTGAACCATTGAGGAGGTAGGTTACCCTAGTTAGCCAATGCAGATCGAGAATGGGAAATCTCTCatttattcatgcaacaaatatttaacaaagccctgccgtgttccaggcctgt--gatagatg
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165794521 145 + 196418989 GTGA-CTTTAAGATGGGAGCAAGTGAACCATTGAGGAGTTAGGTTACCCTGGTTAGCCAATGCAGATCGAGAATGGGAAATCTTTCatttattcatgcaacaaatatttaatgaagccctgctgtgttccaggcttgt--ggtagatg
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56188012 137 + 187371129 ATGA-TTTTCAAGTGG--------AAGCCACCTTAGGGACAGTTTAGCCTGGTCAGCCAATGGTGATGAAGGATGGGGAATACTTTACTTATTCATTCAACAAAAGTTGAATAAACACCTGCCCTGCGTCAGGCCTTT--GATAAATG
|
|
i rn3.chr4 I 103 C 0
|
|
s mm7.chr6 28994725 131 + 149646834 ATGATTTTTCAGAGGG--------AAGCCACCTTAGGAACATGTTAGCCTGGTCAGC-------GATGAAGGATGGGGAATACTTTACttattcattcaacaaaaattgaataaatgcctgctctgtgtcaggccctt--ggtagatg
|
|
i mm7.chr6 I 103 C 0
|
|
s oryCun1.scaffold_194876 3838 138 - 8791 GTGG---CTCCGATGGGAGTAGGTAAGCCATCATAGAGATGAATTAACCTGGTCAGCCCTGGAGGACCCACAATGGGAAATACGTCatttattcattcaactaatatttaaggaacacctgctc-----cagaccctt--ggtagatg
|
|
i oryCun1.scaffold_194876 C 0 C 0
|
|
s bosTau2.chr4 19315720 145 - 69556449 G-GA-CTTTAAAATGGAAGCAGCCTAACCATC-TAGAGGTAGGTTAACCTCATTAGATAATGAAAACCAGAGATGGGAAATATTTCATtcactcattccacaaacattcagtgaggacctactctgtgccaaggccttgggggagatg
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52852878 142 - 63938239 GTGA-CTTTGAGACAGGCGCAGGTGAACCACAGTAGAGGTAGGTTAACCTGGTGAGACAATGAAGATCAGAGATGGGAAATATttgatttat---ttcaacaattatttaatgagtacctgctgtgtgccaggccctC--GGGAAATG
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_102887 6048 121 - 10616 GTAA-TTTCAAGGTGGGAGCAGGTGAGCCATCAGAGAGGCTGGCTAACCAGGTTAAAGAATAAAGACCTGGCCTGGGAAGTATGTCACTTACTCAT----CAAATAT--------------------GCCAGACCCTT--GGTAGGTG
|
|
i dasNov1.scaffold_102887 C 0 C 0
|
|
s echTel1.scaffold_183183 6251 117 + 6931 -----------GGTGGGTGCAGCTGAGCCATCTCAGTGAC----TGACCTGGTGACAGAATGGTG----GGAACGGATCGTGTATTGCCTGCACGT----------TTTGGTGAGCACCTGCTCTGTGCCAGGCCTCT--GTTAACTG
|
|
i echTel1.scaffold_183183 C 0 n 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e loxAfr1.scaffold_2979 18646 1817 - 113413 I
|
|
|
|
a score=23722.000000
|
|
s hg17.chr7 127477848 87 + 158628139 ctggaacaggtacagagat-------------------------Acaggtgtcattaattgatcagggcaa--cctctc---cttctgagt--cttgctggag-cttcagatgcccctca-
|
|
s panTro1.chr6 129891706 87 + 161576975 ctggaacaggtacagaggt-------------------------Acaggtgtcattaattgatcagggcaa--cctctc---cttctgagt--cttgctggag-cttaagatgcccctca-
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165794666 80 + 196418989 ctggAACAGG--------T-------------------------ACACGTGtcattaactgatcagggcag--cctctc---cttctgagt--ctcgttggagacttcagatgcccctca-
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56188149 86 + 187371129 CCGAACCAAG--------T-------------------------GCAGATGTCATTAATGGATTGTGGTACAGCCCCCCAAGCCTCCTGGTGTGTGGCAGGAG-CTCCAGATTCCTTCTG-
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 28994856 81 + 149646834 ctgaaccaag--------t-------------------------gcaggcgtctctagtagagtgtggtgc--ccctcc---tcTCTGAGTGCATGGCAGGAG-CTCCAGATCCCCTTTG-
|
|
i mm7.chr6 C 0 I 76
|
|
s oryCun1.scaffold_194876 3976 76 - 8791 ctggA-CAAG--------C-------------------------gcaggcatcaataattggccatggcac--catctc---cctctgagt--ctggctggag-cctcaaattcccct---
|
|
i oryCun1.scaffold_194876 C 0 I 12
|
|
s bosTau2.chr4 19315865 103 - 69556449 tt-gaacaag--------tgACAtattcaccactcctggatccagcagacatcagtgattgatcacagcac--cttatc---cctctcata--ctggaggggg-cttcagattcctctcc-
|
|
i bosTau2.chr4 C 0 I 1
|
|
s canFam2.chr14 52853020 43 - 63938239 CTGGAACAAG--------TAGCacgtccccgactcctgcacctggaagaca----------------------------------------------------------------------
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_102887 6169 98 - 10616 CTGGGATACG--------TGACACAGCCAGCActcctgtacctggcaggcatcactcactgactgtggca------------cccctgagc--ctggctggag-cttcacgttcccatcaa
|
|
i dasNov1.scaffold_102887 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_183183 6368 0 + 6931 I
|
|
e loxAfr1.scaffold_2979 18646 1817 - 113413 I
|
|
|
|
a score=12231.000000
|
|
s hg17.chr7 127477935 38 + 158628139 cacagagctcgagggagcctc-aacaattgatcagaagt
|
|
s panTro1.chr6 129891793 38 + 161576975 cacagagctcaagggagcctc-aaaaattgatcagaagt
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165794746 38 + 196418989 cacagagctcgagggagcctc-aaaaactgatcagaggc
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56188235 33 + 187371129 GACAGTGCTCCGGGAAGCCACTGAAAATTGATC------
|
|
i rn3.chr4 C 0 C 0
|
|
s bosTau2.chr4 19315969 38 - 69556449 ctcagcactccaaggaaccac-aaaacctgatcagagtt
|
|
i bosTau2.chr4 I 1 I 36
|
|
s canFam2.chr14 52853063 14 - 63938239 -tcactagttgatgg------------------------
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_102887 6267 38 - 10616 ttcagtgctccggggagccaccaccaatggataagagg-
|
|
i dasNov1.scaffold_102887 C 0 I 522
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_183183 6368 0 + 6931 I
|
|
e loxAfr1.scaffold_2979 18646 1817 - 113413 I
|
|
e mm7.chr6 28994937 76 + 149646834 I
|
|
e oryCun1.scaffold_194876 4052 12 - 8791 I
|
|
|
|
a score=25281.000000
|
|
s hg17.chr7 127477973 109 + 158628139 caggcaccatggctcacgcatataatcccagcactttgggaggccaaggcaggtggatcactggagcccaggagttccagatcagctggggcaacatggcaaaacccca
|
|
s rheMac2.chr3 165794784 109 + 196418989 caggcaccatgactcatgcctataatcccagcactttgggaggccaaggcaggtagatcactggggcccaggagttccagaccagccggggcaacatggcaaaatccca
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129891831 109 + 161576975 caggcaccatggctcacgcatgtaatcccagcactttgggaggccaaggcaggtggatcactggagcccaggagttccagatcagctggggcaacatggcaaaacccca
|
|
i panTro1.chr6 C 0 C 0
|
|
s canFam2.chr14 52853077 41 - 63938239 -aggtacc----ctctcgcct---------------------------------------------ctgaggaacttcagggccgc------------------ctcca
|
|
i canFam2.chr14 C 0 I 29
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_183183 6368 0 + 6931 I
|
|
e dasNov1.scaffold_102887 6305 522 - 10616 I
|
|
e loxAfr1.scaffold_2979 18646 1817 - 113413 I
|
|
e rn3.chr4 56188268 0 + 187371129 C
|
|
e mm7.chr6 28994937 76 + 149646834 I
|
|
e bosTau2.chr4 19316007 36 - 69556449 I
|
|
e oryCun1.scaffold_194876 4052 12 - 8791 I
|
|
|
|
a score=47628.000000
|
|
s hg17.chr7 127478082 202 + 158628139 tctctat----taaaaaaaaaaaaagtaactggatgtgatggtacacacctgtagtcccagctacttgggaggctgagaggtgggagaattgcttgagcccgggaagtcgggggtccagtgagccttgatcacaccactgcactccagcctgagtgacagagcaagaccctgacacacacacacacacacacacacacacacacac---------
|
|
s panTro1.chr6 129891940 188 + 161576975 tctctat-------aaaaaaaaaaattaactggatgtgatggtacacacctgtagtccctgctacttgggaggctgagaggtgggagaattgcttgagcccgggaagtcgggggtccagtgagccttgatcacaccactgcactccagcctgagtgacagagcgagaccctgacacacacacacacacacacaca--------------------
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165794893 215 + 196418989 tctctataaaaaaaaaaaaaaaaaattaacttgatgtggtggtgcacacctgtagtcccagctactcgggaagctgagaggtgggagaattgcttgagccctggaagtcggggctccagtgagccttgatcacaccactgcactccagcctgagtgacagagcaagaccctgacacacacacacacacacacacacacacacacacacacacaca
|
|
i rheMac2.chr3 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_183183 6368 0 + 6931 I
|
|
e dasNov1.scaffold_102887 6305 522 - 10616 I
|
|
e loxAfr1.scaffold_2979 18646 1817 - 113413 I
|
|
e canFam2.chr14 52853118 29 - 63938239 I
|
|
e rn3.chr4 56188268 0 + 187371129 C
|
|
e mm7.chr6 28994937 76 + 149646834 I
|
|
e bosTau2.chr4 19316007 36 - 69556449 I
|
|
e oryCun1.scaffold_194876 4052 12 - 8791 I
|
|
|
|
a score=27292.000000
|
|
s hg17.chr7 127478284 64 + 158628139 agattagagctgaaacaggagtagaaacctatctg-tatctctgATGA-GATCAGATC---------TTTCTGAT
|
|
s oryCun1.scaffold_194876 4064 63 - 8791 -gattagagctgacagaggagttgaaatccatttgccatccTCAATGA-GATCAGACC---------TCAGGGT-
|
|
i oryCun1.scaffold_194876 I 12 C 0
|
|
s rn3.chr4 56188268 43 + 187371129 -----AGAGTTGACGCAGGAGTTGAAATCTATTTGCTTTCCCTAATGG---------------------------
|
|
i rn3.chr4 C 0 C 0
|
|
s canFam2.chr14 52853147 69 - 63938239 -gatcagagttgacac-----tggaaacccatgtgttatccctAATGAGGATCAGATCTGAGGGTGGTTTATGAG
|
|
i canFam2.chr14 I 29 C 0
|
|
s bosTau2.chr4 19316043 27 - 69556449 A------------------------------------------------GATTGAATCTAAGGGTAGTTTCTGAT
|
|
i bosTau2.chr4 I 36 C 0
|
|
s panTro1.chr6 129892128 64 + 161576975 agattagagctgaaacaggagtagaaacctatctg-tatctctgATGA-GATCAGATC---------TTTCTGAT
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165795108 63 + 196418989 agattagagctgacacagga-tagaaacctatctg-tatctctgATGA-GATCAGATC---------TTTCTGAT
|
|
i rheMac2.chr3 C 0 C 0
|
|
s loxAfr1.scaffold_2979 20463 63 - 113413 ----------tgacacagaaattgaaacttatttgctatccccgATG--GGTCAGATCTAGGCGTAGTTTCTGGT
|
|
i loxAfr1.scaffold_2979 I 1817 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_183183 6368 0 + 6931 I
|
|
e dasNov1.scaffold_102887 6305 522 - 10616 I
|
|
e mm7.chr6 28994937 76 + 149646834 I
|
|
|
|
a score=268900.000000
|
|
s hg17.chr7 127478348 205 + 158628139 GAACAGAAAGAATGTAACCCCTGTACTCACACCCTCTCTGCTGGTTACATATGTTAACACGATTTCTCAAATGAGGCTTTTGGTTGCAAATAAGAGAAAA-TCACTCACGCT-GGCCCTGTGT--TTTTC-AAATTGTTTATTGTGATCAACAT--------TTGAAAAAAGAGCCGAGACTCTCAAGAGTGCATTACCCACGGTAAGGGTGAATTTT--------------------------------------------------------
|
|
s canFam2.chr14 52853216 193 - 63938239 GAGTACGAAGACTATAACCCCCACACCCACACTCTGGCTGCTGGTTAAGTAGGTTAAC---ATTTCTGAAACAAGGCTTTCAGTTGCAGATAAGAGAAAA-CCACTCATGCT-AGCTCAGTGT----GTC-AAACAACATATTGCAACCCACAT--------TTAAAAAACAGA-----ACTCTTAGGAGTATATCACTCACAGT--AAGTGAATTTG--------------------------------------------------------
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19316070 203 - 69556449 GAACAGAAAAACTATAACCCTTGCACCCACATTCTGGCTACCAATTAAGTATGTTAACCTGATTTCTCAACCAGGCTCCTTACTTGCAAATAAGAGAAAA-TCACTCATGCT-AGCTCAGTGT----TTT-CAACTGCATATTGCAACCAACAC--------TTAAAACCAGGATGGAGACTCTCCAGTATGCATCACCCATAGTGAAGATGAATTTT--------------------------------------------------------
|
|
i bosTau2.chr4 C 0 C 0
|
|
s oryCun1.scaffold_194876 4127 186 - 8791 AGCTCCTAAGAATCTAGAGCCCT-ACTCACTTCCTGGCTGCTAGGTAAGGAGATTATCAGGATTTCTCAAATGCTGCTTTGGGTTACAGAAAAGAGAAAGCCTGCTCACGGC-AGCGCAGTGC--TGTTC-AGATGGTGTGCTGTGACCAGCGT--------TTGAAAAAC-AACTGGTACCTTCTGGGCCACACCACCC--------------------------------------------------------------------------
|
|
i oryCun1.scaffold_194876 C 0 C 0
|
|
s mm7.chr6 28995013 199 + 149646834 GAATGAAAAGAATATAACCCCCTCACCCACACTGTGCCTACCAGCTAAGAATGTCAGCATGATTTCTCAAGCAAGGCCTTTGGTTGCAGAGAAGAGAAAA-TTGCTCCTGCTAAGATCAGTGA--TTTTC-AAATTGTATACTGTGGCCAGCAC--------TTGAAGAATGAGCTGAAATCCCCTAG---AGATCACCTGCAGCAAGGGCAAA------------------------------------------------------------
|
|
i mm7.chr6 I 76 I 1582
|
|
s rn3.chr4 56188311 205 + 187371129 GAATGAAAGCAATATAACCCCCTCACCCACACTGTGCCTACCAGCTAAGAATGTCAGCATGATTTCTCAAGCAAGGCCTTTGGTTGCAGAGAAGAGAAAA-TTGCTCCTGCTAAGCTTAGTGACTTTTTC-AAATTGTGTACCATGGCCAACAC--------TTGAGGAATGAGATAAAATCCCCACG---AGATCACCTGCAGCAAGGGCAGATCCT--------------------------------------------------------
|
|
i rn3.chr4 C 0 I 2126
|
|
s rheMac2.chr3 165795171 205 + 196418989 GAACAGAAAGAATGTAACCCCTGTACTCACACCCTGTCTGAGGGTTACATATGTTAACACGATTTCTCAAATGAGGCTTTTGGTTGCAAACAAGAGAAAA-TCGCTCATGCT-GGCCCTGTGT--TTTTC-AAATTGTATATTGTAATCAACAT--------TTGAAAAAAGAGCCAAGACTCTCAAGAGTGCATTACCCATGGTAAGGGTGAATTTT--------------------------------------------------------
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129892192 205 + 161576975 GAACAGAAAGAATGTAACCCCTGTACTCACACCCTCTCTGCTGGTTACATATGTTAACACGATTTCTCAAATGAGGCTTTTGGTTGCAAATAAGAGAAAA-TCACTCACGCT-GGCCCTGTGT--TTTTC-AAACTGTTTATTGTGATCAACAT--------TTGAAAAAAGAGCCGAGACTCTCAAGAGTGCATTACCCATGGTAAGGGTGAATTTT--------------------------------------------------------
|
|
i panTro1.chr6 C 0 C 0
|
|
s loxAfr1.scaffold_2979 20526 268 - 113413 GGACAGGAAGAATATAATCCTCATGCCCACAATCTAGCTACCAGTTAGGAATGTTAACATGATTTCTCAAATTAGGCCCTTGGTTGAAAATAAGAGAAA--CCACTCACGCT-AGCCTAGTGT--TTTTCAAAAATGTGTTTTGAgactaacataaataaaaagaaagaaagaatcaagactctc-ggaatgcaccacccatagtaagggtgaagtttgtaactgacacttgtttcatttaAGGTCCCTGGGTGGTGCAAAAGGTTTGCATTTT
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_183183 6368 0 + 6931 I
|
|
e dasNov1.scaffold_102887 6305 522 - 10616 I
|
|
|
|
a score=74124.000000
|
|
s hg17.chr7 127478553 88 + 158628139 ACTTCTTGACAC-------------------------------------------TTATTTCTCTTACA--TGTATCTATC------TGTCTCAAATGAAAAA----TATATTTAGAAAGTTGAAAGCTATCCAAGTG---AGTAT
|
|
s panTro1.chr6 129892397 88 + 161576975 ACTTCTTGACAC-------------------------------------------TTATTTCTCTTACA--TGTATCTATC------TGTCTCAAATGAAAAA----TATATTTAGAAAGTTGAAAGCTCTCCAAGTG---AGTAT
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165795376 90 + 196418989 ATTTCTTGACAC-------------------------------------------TTATTTCTCTTACA--TGTATCTATCTA----TGTCTCAAATGAAAAA----TAGATCTATAAAGTTGAAAGCTATCCAAGTG---AGTAT
|
|
i rheMac2.chr3 C 0 C 0
|
|
s oryCun1.scaffold_194876 4313 73 - 8791 ---------------------------------------------------------GTTCCTCTTTCAGGTGTATCTGTC------TGTT---AAACAAAAA----TACATTCAGAAAATCAAAAGCTGCTCAAGTA---AGAAT
|
|
i oryCun1.scaffold_194876 C 0 I 541
|
|
s bosTau2.chr4 19316273 101 - 69556449 ATTTCCTGACAC-------------------------------------------TTGTTTTTCTTACA--GGTGTGTATCTATATGTCTCCTGGATGAAAAAAATGTATATTCAGAAAGTTGAAAACTACTCAAGTGAGCAGTAT
|
|
i bosTau2.chr4 C 0 I 1
|
|
s canFam2.chr14 52853409 89 - 63938239 ATTTCTTGACAT-------------------------------------------TTGTTCCTCTTACT--TGTGTTTATCTATA--TCCCCTGGATTAAAAAA---TATAATCAGAGAGCTGAAATGTACCCG-------AGTCT
|
|
i canFam2.chr14 C 0 I 1
|
|
s dasNov1.scaffold_102887 6827 85 - 10616 ATTTCTTGAGAC-------------------------------------------TGGCTTCACTTATACGTGTATCTGTCTG----TGTCCTGGG-----------TGTATTCAGAAAGTTGAATGTTGCTCGAGTG---CGTAG
|
|
i dasNov1.scaffold_102887 I 522 I 1
|
|
s loxAfr1.scaffold_2979 20864 137 - 113413 ACTATGTAACACATGCAGTTGCCATAAATTGGAACTGATTAGAAGACAATGGGTTTTGTTTCACTTACG--TGTGTGTATCTTTATGTCTCTTGGGTGAAAAA----CATATTCAGAAAGTCAAAAGCTACCCAATTG---AGGCT
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_183183 6368 0 + 6931 I
|
|
e rn3.chr4 56188516 2126 + 187371129 I
|
|
e mm7.chr6 28995212 1582 + 149646834 I
|
|
|
|
a score=75466.000000
|
|
s hg17.chr7 127478641 106 + 158628139 AAGAAAAGAGTATCTCACCCTGAAGGCTAAGGACAGG--------------GAGGGC---------------------------CACCAGGCCTCACGAGGACCCAGGAACCACAAAGAAGG-CTAGGAAGGAGCACAGGCGGTGACC
|
|
s rheMac2.chr3 165795466 106 + 196418989 AAGAAAAGAGTATCTCACCCTGGAGGCTAAGGACGGG--------------GAGAGC---------------------------CACCAGGCCTCACGAGGACCCAGGAACCACAAAGAAGG-CTAGGAAGGAGCACAGGTGGTGACC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129892485 133 + 161576975 AAGAAAAGAGTATCTCACCCTGAAGGCTAAGGACAGG--------------GAGGGCCACCAGGCCTCACGAGGACCCAGGAAGCACCAGGCCTCACGAGGACCCAGGAACCACAAAGAAGG-CTAGGAAGGAGCACAGGCAGTGACC
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19316375 101 - 69556449 TGTGAAAAAGTATCTCACCCTTGAGGCTAAGGACAGG--------------GCGAGC-----------------------------CTAGAACCAACAAGCA--CAGG-ACCAGAAAGAAGG-TCAAGAAAAAGCACAAGCATTGACC
|
|
i bosTau2.chr4 I 1 C 0
|
|
s canFam2.chr14 52853499 103 - 63938239 CGTGGAAGAGTATCTCACAGTGGAGGCTAAGGACAGG--------------GAGGGT-----------------------------CCAGAACCAACAAGGT--GAGGAACCAGAAAGAAGGTTCAGGAAGGAGCATAGGCACTGACT
|
|
i canFam2.chr14 I 1 C 0
|
|
s dasNov1.scaffold_102887 6913 92 - 10616 AATGGAAGAGTGTATCACACGGGAGCCTGAGGACAGGAGG------CTCATGAGGAC-----------------------------TCAGAACCAAAAAGGT--CTGGGACCAGACAGAAGG-TCAGGAA------------------
|
|
i dasNov1.scaffold_102887 I 1 C 0
|
|
s loxAfr1.scaffold_2979 21004 110 - 113413 TGGAAAAGAGTATGGCACACTGTAGCCTGAGGTTAGAAAGCTGTGCCTCATGAGGGG-----------------------------CCAGAATCCAAAAGT---CAGGAATCAAAGAGAAGG-TTTGGAA-----CCAGGCAGTGTCC
|
|
i loxAfr1.scaffold_2979 C 0 I 1
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_183183 6368 0 + 6931 I
|
|
e rn3.chr4 56188516 2126 + 187371129 I
|
|
e mm7.chr6 28995212 1582 + 149646834 I
|
|
e oryCun1.scaffold_194876 4386 541 - 8791 I
|
|
|
|
a score=53832.000000
|
|
s hg17.chr7 127478747 90 + 158628139 ATACTCTGG-------------CTCAGTGGCTATGTGGGCTCTGGTCTCTCTCAGCTGTTCCATGCATATGAGGCCAAATGTGGCTACCCTAGAGCTTCTGAG
|
|
s dasNov1.scaffold_102887 7005 68 - 10616 ---------------------CCAGAGTGGTGA---------CGGTCTCCGTC-----TCCCGTGCACACAAGGCCAAACGTGACCGCCTCGGAGATTCCAAG
|
|
i dasNov1.scaffold_102887 C 0 C 0
|
|
s canFam2.chr14 52853602 88 - 63938239 GTAACCCACCTG---------TTACAG------GATGAACTCTGGTCTTCCTCAGCTATTCCATGCACATGAGGGCAATCGCAGCTAACCTGGAGCTTCTGAG
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19316476 103 - 69556449 ATAATCCACACGCCCCCCTCCCCGCAGTGGGTAGATGGACCCTGGTCTCTCTTAACTACTCCATGCATGTGATGTCAGCCATGGCTACCCTTGAGTTTCTGAG
|
|
i bosTau2.chr4 C 0 C 0
|
|
s panTro1.chr6 129892618 90 + 161576975 ATACTCTGG-------------CTCAGTGGCTATGTGGGCTCTGGTCTCTCTCAGCTGTTCCATGCATATGAGGCCAAATGTGGCTACCCTAGAGCTTCTGAG
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165795572 92 + 196418989 GTACTCCGGT-----------TCTCAGTGGCTATGTGGGCTCTGGTCTCTCTCAGCTGTCCCATGCACATGAGGCCAAATGTGGCTACCCTAGAGCTTCTGAG
|
|
i rheMac2.chr3 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_183183 6368 0 + 6931 I
|
|
e loxAfr1.scaffold_2979 21114 1 - 113413 I
|
|
e rn3.chr4 56188516 2126 + 187371129 I
|
|
e mm7.chr6 28995212 1582 + 149646834 I
|
|
e oryCun1.scaffold_194876 4386 541 - 8791 I
|
|
|
|
a score=82828.000000
|
|
s hg17.chr7 127478837 99 + 158628139 CCCTCAACAGAGATGAACTGGACTCTCTGCAGCCCCACTCTAAATTCCTAAGAGAG-AAGTTGATTGACCCAATCAGGGTCAGGAGAAGGAAGGGAGGAG
|
|
s rheMac2.chr3 165795664 99 + 196418989 CCCTCAACAGAGATGAACTGGACTTTCTGCAGCCCCACTGTAAGTTCCTAAGAGAG-CAGTTGATTGACCCAATCAGGGTCAGGAGAAGGAATGTAGGAG
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129892708 99 + 161576975 CCCTCAACAGAGATGAACTGGACTCTCTGCAGCCCCACTCTAAATTCCTAAGAGAG-AAGTTGATTGACCCAATCAGGGTCAGGAGAAGGAAGGGAGGAG
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19316579 87 - 69556449 TCTTCATCAGAGGCAAACTGGACTCCTCAGAG-CATACTTTAAATTCCTGGGAGAG-ATGTTAACTGACCCAGTCAGGACC-----------TGGAGGAG
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52853690 88 - 63938239 CCCTCAACAGAGACAAACTGGGCTCTCTGAAGCCCTACTTTCAATTCCTGGAAGAG-ATGGTAATTGACCGGATCAGGGTT-----------TGGAGGAG
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_102887 7073 100 - 10616 CCCTCAACAGAGACAGATTGAGCTCTCTGAACCCCTCCTCTAAATCCCTGGGAATGCGGGCTGCTTGATCCAATCAGGGGCTGGAGGAGGAAGGGATGAG
|
|
i dasNov1.scaffold_102887 C 0 I 2281
|
|
s echTel1.scaffold_303592 39927 82 - 43113 CCTCCAAGAGAGATGGACAAGACGTTCTGTGTACTGACTCCAATTTCTCAAAGCAG-AAGCTGATTGGCCCAGCATGGGCTGG-----------------
|
|
i echTel1.scaffold_303592 n 0 n 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e loxAfr1.scaffold_2979 21114 1 - 113413 I
|
|
e rn3.chr4 56188516 2126 + 187371129 I
|
|
e mm7.chr6 28995212 1582 + 149646834 I
|
|
e oryCun1.scaffold_194876 4386 541 - 8791 I
|
|
|
|
a score=114470.000000
|
|
s hg17.chr7 127478936 271 + 158628139 GAAAGGGAGGA-----GAGAAGAGC-CTCTTCGTCTCTTGCCTACCACTGGCCAGGCAATTGTAGCCAAGGGGGCTGGAGTGTAAATGCAAACATAGCCATCAAGGGTtgtgtatgtgtgtgtgtgtgtctgtgtgtgtgtatgtgtgtCTCTTGGGTAGGTTAGA-TCTCCCAGGAGGTCCCTACTAAA--CAGACTTAAGCCCGCAAAATTTTAGCTCTCCAGCCTCACACACTCCACCCCTCTACCATATTGAATCTTCCCAAACCAACTATGGCTT
|
|
s rheMac2.chr3 165795763 262 + 196418989 GAAAGGGAGGA-----GAGAAGAGC-CTCTTCGTCTCTTGCCTACCACT-----GGCAGTTGTAGCCAAGGGGGCTGGAGTGTAAATGCAGACATAGCCACCAAGGGTtgtgtatgtgtgtgtgtgtg--tgtgtctgtgtatgtgtg--CCTTGGGTAGGTTAGA-TCTCCCAGCAGGTCCCTACTAAA--CAGACTTAAGTCCCCCAAATTTTAGCTCTCCAGCCTCACACACTCCACCCCTCTACCATAGTGAATTCTCCCAAACCAACCATGGTTT
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129892807 271 + 161576975 GAAAGGGAGGA-----GAGAAGAGC-CTCTTGGTCTCTTGCCTACCACTGGCCAGGCAGTTGTAGCCAAGGGGGCTGGAGTGTAAATGCAAACATAGCCATCAAGGGTtgtgtatgtgtgtgtgtgtgtctgtgtgtgtgtatgtgtgtCTCTTTGGTAGGTTAGA-TCTCCCATGAGGTCCCTACTAAA--CAGACTTAAGCCCCCAAAATTTTAGCTCTCCAGCCTCACACACTCCACCCCTCTACCATATTGAATCTTCCCAAACTAACCATGGCTT
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19316666 224 - 69556449 GAAAGGGAAGA-----GAAAAGAGTATTCTGCTTCTCTTGCCCACTACT--------------------------------GTTAATGCAAACATCGCCTCCAGGATTCgtgtgtgtgtgtgtgtgtg----------------tgtg--tCCTGCATAGGGCAGA-TCTCCCAGAAGGTCCCGGCCACCCATAGAATCAAGCCCAGGAcattctagctctccagcctcacatacactactcttcttccatattgaattctctcaaacccaccatggtat
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52853778 195 - 63938239 AAAGAGATAGAAGGAGGAGAAGAGTATTCTCGGTCTCTTGCCTACCACT--------------------------------GGTCATGCC-------CCTCCAGG--------------GCGTGTGTG----------------TGTG--TTCTG-AGAGGGCAGATTCCCCCACGAGG-------------TGGAATCCAGCCTGGGACAttctagctctctagccttacatgctctatcattctgccatattgaattctcctaaacccaccatagttt
|
|
i canFam2.chr14 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_303592 40009 0 - 43113 I
|
|
e dasNov1.scaffold_102887 7173 2281 - 10616 I
|
|
e loxAfr1.scaffold_2979 21114 1 - 113413 I
|
|
e rn3.chr4 56188516 2126 + 187371129 I
|
|
e mm7.chr6 28995212 1582 + 149646834 I
|
|
e oryCun1.scaffold_194876 4386 541 - 8791 I
|
|
|
|
a score=34916.000000
|
|
s hg17.chr7 127479207 46 + 158628139 TCCCTAACTCCGGA------Gcttggcctggaatgccctgcttcccctcttt
|
|
s canFam2.chr14 52853973 52 - 63938239 ttcccaactccacactgtcacattggtctggaatgccctgcttgccttcttc
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19316890 52 - 69556449 atcccaactccacactgtccccttggcctggaatgctctgcttgcttccctc
|
|
i bosTau2.chr4 C 0 C 0
|
|
s panTro1.chr6 129893078 46 + 161576975 TCCCTAACTCCGGA------Gcttggcctggaatgccctgcttcccctcttt
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165796025 46 + 196418989 TCTCCAACTCCGGA------Gcttggcctggaatgccctgcttcacctcttt
|
|
i rheMac2.chr3 C 0 C 0
|
|
s echTel1.scaffold_20104 1435 46 + 4160 TCTCAAGCTCTGCC------CTTCTGCCTGGGGCACCCTGCTTCCCCCCTCC
|
|
i echTel1.scaffold_20104 n 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e dasNov1.scaffold_102887 7173 2281 - 10616 I
|
|
e loxAfr1.scaffold_2979 21114 1 - 113413 I
|
|
e rn3.chr4 56188516 2126 + 187371129 I
|
|
e mm7.chr6 28995212 1582 + 149646834 I
|
|
e oryCun1.scaffold_194876 4386 541 - 8791 I
|
|
|
|
a score=73711.000000
|
|
s hg17.chr7 127479253 118 + 158628139 cccctggggaacgcctgtccttcaggcctcagttcacacactgcctcccttgcaaagctctccTCCCATCCCCGGAGTC----CCTCTTCCCCTTTGTTCTTTGGGTTCTATGCTTCTTCCC
|
|
s rheMac2.chr3 165796071 118 + 196418989 tccctggggaatgcctgtctttcaggcctcaattcacatactgcctccctttcaaagctctcctcccgtccctagagtc----cctcttcccctttgttctttgggttctatgcttcttccc
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129893124 118 + 161576975 cccctggggaacgcctgtccttcaggcctcagttcacacactgcctcccttgcaaagctctcctcccatccccagagtc----cctcttcccctttgttctttgggttctatgcttcttccc
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19316942 101 - 69556449 ctcctggggaactccggtccttcaggtctc------------------tgtgcaaagctat-cttggctgcccagagtca--gcccttttccctgtgctcccccagatccaggttccttccc
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52854025 119 - 63938239 cgcctggaggactcctgtccttaaggtctcagttcaaatactgtctcatttgcaaagctgtcctcacctttctagggtta--cttctttcctctatgctccccagattctaTGTTCCTT-CC
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_259847 3245 117 + 4110 CCCATGGGACACGCCTGTCCTTCA-GCCTCAGTGCAGATGTTGCCCGCTTCGTGATGCTCTCCCCACCGCCCCAGCGCT---GCCCTCTCCCCTCTGCTGCCT-GGTCCTCCACTCCCCCTT
|
|
i dasNov1.scaffold_259847 M 2319 C 0
|
|
s echTel1.scaffold_20104 1481 101 + 4160 TCCCTGGAGAAC-CCTGCCCATCAG--------------ATAGGCCACTTTGAGAAGCTCCCCTC-----TCCAGAGTTGCCAACCCTCCCGCTGTCTCCCCT-GATCCTGGGCTGCCGCCA
|
|
i echTel1.scaffold_20104 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e loxAfr1.scaffold_2979 21114 1 - 113413 I
|
|
e rn3.chr4 56188516 2126 + 187371129 I
|
|
e mm7.chr6 28995212 1582 + 149646834 I
|
|
e oryCun1.scaffold_194876 4386 541 - 8791 I
|
|
|
|
a score=56693.000000
|
|
s hg17.chr7 127479371 42 + 158628139 TCATAACTCCCACCAGGTTGTGTTAAAATGAGTTGTTCAAGG
|
|
s panTro1.chr6 129893242 42 + 161576975 tcataactcccactaggttgtgttaaaatgagttgttcaagg
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165796189 42 + 196418989 tcataagctccaccaggttgtgttaaaatgagttgttcaagc
|
|
i rheMac2.chr3 C 0 C 0
|
|
s oryCun1.scaffold_136519 39377 42 + 60523 TCATAGTATCCACCAGAATGTGGCTGAGTGAGTTATTTATGC
|
|
i oryCun1.scaffold_136519 n 541 C 0
|
|
s bosTau2.chr4 19317043 42 - 69556449 ttataacgttcaccaggttgtattaaaatgagttgtttaagc
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52854144 42 - 63938239 TCATAACCTTGATGAGATTGTATTAAAGTGAGTTATTTAAGC
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_259847 3362 42 + 4110 TTATCACATTCATCAGGTGGTGTTAAAATGATTTGTTAAggg
|
|
i dasNov1.scaffold_259847 C 0 I 183
|
|
s echTel1.scaffold_20104 1582 42 + 4160 TCATAATCTTTACCCCGTTGGGTCCAAATGATTTGTTTGAAA
|
|
i echTel1.scaffold_20104 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e loxAfr1.scaffold_2979 21114 1 - 113413 I
|
|
e rn3.chr4 56188516 2126 + 187371129 I
|
|
e mm7.chr6 28995212 1582 + 149646834 I
|
|
|
|
a score=43313.000000
|
|
s hg17.chr7 127479413 38 + 158628139 TCCTGTCTGTTCCACTAGATTCTGAGCAACTTGGAGAA
|
|
s panTro1.chr6 129893284 38 + 161576975 tcctgtctgttccactagattctgagcAACCTGGAGAA
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165796231 38 + 196418989 ttctgtctgttccagtagattctgagcAACTTGGAGAA
|
|
i rheMac2.chr3 C 0 C 0
|
|
s oryCun1.scaffold_136519 39419 38 + 60523 ACCTGTCTGCTCTTCTAGACTCTGAATGTGCTGAGGAA
|
|
i oryCun1.scaffold_136519 C 0 n 0
|
|
s bosTau2.chr4 19317085 38 - 69556449 ttctgtctgttccactggattctgaagaactcagagga
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52854186 38 - 63938239 TTCTGTTTGTTCCACTGGATTCTGAGTAGCTTGAATGA
|
|
i canFam2.chr14 C 0 C 0
|
|
s echTel1.scaffold_20104 1625 37 + 4160 CTCTGCCTGTTCCACTGGAC-CTGGGTCGCTTGAAGAA
|
|
i echTel1.scaffold_20104 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e dasNov1.scaffold_259847 3404 183 + 4110 I
|
|
e loxAfr1.scaffold_2979 21114 1 - 113413 I
|
|
e rn3.chr4 56188516 2126 + 187371129 I
|
|
e mm7.chr6 28995212 1582 + 149646834 I
|
|
|
|
a score=20824.000000
|
|
s hg17.chr7 127479451 42 + 158628139 CGAAGATCCAAACTTCGCTGCCTTTATTTCCTCCTTTGTTCT----
|
|
s rheMac2.chr3 165796269 42 + 196418989 CCAAGATCCAAACTTCACTGTCTTTATTTCCTCCTTTGTTCT----
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129893322 42 + 161576975 TGAAGATCCAAACTTCGCTGCCTTTATTTCCTCCTTTGTTCT----
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19317123 34 - 69556449 c------ccagacttctctgtctcc--ttcatcctttgtccT----
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52854224 41 - 63938239 CCAGCATCCAGGCTTCTCTGTCTCTA-TTCATCCTTTGTTTA----
|
|
i canFam2.chr14 C 0 C 0
|
|
s echTel1.scaffold_20104 1662 37 + 4160 -------CCGTGCCTAGCAGTCTGT--TTCCTCCTTGGTCTGCCTT
|
|
i echTel1.scaffold_20104 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e dasNov1.scaffold_259847 3404 183 + 4110 I
|
|
e loxAfr1.scaffold_2979 21114 1 - 113413 I
|
|
e rn3.chr4 56188516 2126 + 187371129 I
|
|
e mm7.chr6 28995212 1582 + 149646834 I
|
|
e oryCun1.scaffold_136519 39457 0 + 60523 I
|
|
|
|
a score=34031.000000
|
|
s hg17.chr7 127479493 36 + 158628139 TTTCTCATCCCCA--AGTCCCTTCCAACTTGG---------------AGTTAT
|
|
s rheMac2.chr3 165796311 51 + 196418989 TTCCTCATCCCCA--GGTCCCTTCCAACTTGGAGTTggaagaaaggaagttat
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129893364 36 + 161576975 TTTCTCATCCCCA--AGTCCCTTCCAACTTGG---------------AGTTAT
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19317157 36 - 69556449 TTCTTCATCCCCA--AGTCCCTTCCTACTGAC---------------AGTAAG
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52854265 36 - 63938239 TTCCTTGTCCCCA--AGTCCCTTCCAACTTAG---------------AATTAC
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 21115 36 - 113413 TTCCTCATCCCCA--TATCCCTTTCATCTTGG---------------AGGTAT
|
|
i loxAfr1.scaffold_2979 I 1 I 237
|
|
s echTel1.scaffold_20104 1699 36 + 4160 ATCCCCATCCTCAAGTGTCCATTCCA--GTCG---------------AGCTAT
|
|
i echTel1.scaffold_20104 C 0 I 1
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e dasNov1.scaffold_259847 3404 183 + 4110 I
|
|
e rn3.chr4 56188516 2126 + 187371129 I
|
|
e mm7.chr6 28995212 1582 + 149646834 I
|
|
e oryCun1.scaffold_136519 39457 0 + 60523 I
|
|
|
|
a score=66138.000000
|
|
s hg17.chr7 127479529 85 + 158628139 gaagaaaggaaggaaggaagggtgggagggaagaaCAGGAGGGGAT-CCCACAGGAGAATGTGTATAGGGA----GAGGACTCAGACTAG
|
|
s rheMac2.chr3 165796362 85 + 196418989 gaagaaaggaaggaaggaaggGTGGGAGGGAAAAACAGGAGGGGGT-CCCATGGGAGAATGTGTATAGGGA----GAGGACTCAGACTAG
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129893400 85 + 161576975 gaagaaaggaaggaaggaagggtgggagggaagaaCAGGAGGGGAT-CCCACAGGAGAATGTGTATAGGGA----GAGGACTCAGACTAG
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19317193 89 - 69556449 GGAGAAAGGAATGAAGGAAGGCTGAGAGGGAAGAATGCAAGGGAAC-CAACAGGAAAGATTTCTACAGGGAGAGAGAAGGCATAGACTAC
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52854301 80 - 63938239 GGAGACAGGAAAGCAGAG----TAGAAGGAAAGGATGAGAGGGAGC-CCACAGGAAGAATTTCTGCAAGGA-----AAGGCTTAGACCAT
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 21388 86 - 113413 gaaggaaggaaggaaggaaggGTGAGAAGGTAGGTTGGGAGGGCAGCCCACAGGAAGAATTTCTATAGCAA----GAGGTCTTAGACCAT
|
|
i loxAfr1.scaffold_2979 I 237 C 0
|
|
s echTel1.scaffold_20104 1736 51 + 4160 CGAGAAAGGAAG-----------------------------------TCCCAGGGAGAATCTCTGTGGGGA----GAAGGCTTAGACCAG
|
|
i echTel1.scaffold_20104 I 1 I 1394
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e dasNov1.scaffold_259847 3404 183 + 4110 I
|
|
e rn3.chr4 56188516 2126 + 187371129 I
|
|
e mm7.chr6 28995212 1582 + 149646834 I
|
|
e oryCun1.scaffold_136519 39457 0 + 60523 I
|
|
|
|
a score=35456.000000
|
|
s hg17.chr7 127479614 35 + 158628139 CTAAAGCTTTTCCCTCATAATTAATAGCAAATACC-
|
|
s rheMac2.chr3 165796447 35 + 196418989 CTAAAGGTTTTCCCTTATAATTAATAGTAAATACC-
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129893485 35 + 161576975 CTAAAGCTTTTCCCTCATAATTAATAGCAAATGCC-
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19317282 35 - 69556449 CCAAAGCTTTCTCCTTAAAATGAATAGTAAATACC-
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52854381 35 - 63938239 CCAAAGCTTTTCCCTCATAATTAATAGCAAATATC-
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 21474 36 - 113413 CCAAAGCTTTTTCCTTGTAATTAATGGCAAATAACC
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 1787 1394 + 4160 I
|
|
e dasNov1.scaffold_259847 3404 183 + 4110 I
|
|
e rn3.chr4 56188516 2126 + 187371129 I
|
|
e mm7.chr6 28995212 1582 + 149646834 I
|
|
e oryCun1.scaffold_136519 39457 0 + 60523 I
|
|
|
|
a score=57983.000000
|
|
s hg17.chr7 127479649 40 + 158628139 ATGTT-ACCTGAATTTAATTCACAGTAGCATACAAAAGACT
|
|
s panTro1.chr6 129893520 40 + 161576975 ATGTT-ACCTGAATTTAATTCACAGTAGCATACAAAAGACT
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165796482 40 + 196418989 ATGTT-ACCTGAATTTAATTCACAGTAGCATACCAAAGACT
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56190642 40 + 187371129 ACATT-ATCTGAATTTAATTCATAGTAGCATACCAAAGACT
|
|
i rn3.chr4 I 2126 C 0
|
|
s mm7.chr6 28996794 37 + 149646834 ---TT-ATCTGAATTTAATTCATAGTAGCATACCAAAGACT
|
|
i mm7.chr6 I 1582 I 164
|
|
s bosTau2.chr4 19317317 22 - 69556449 ACAttcagttcagttcagttca-------------------
|
|
i bosTau2.chr4 C 0 I 815
|
|
s canFam2.chr14 52854416 40 - 63938239 ACATT-ATCTGAATTTAATTCACACTAGCACATCAAGGATT
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 21510 40 - 113413 ATATT-ACCTGAATTTAATTCATACTAGCATGCAAAAGGCT
|
|
i loxAfr1.scaffold_2979 C 0 I 998
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 1787 1394 + 4160 I
|
|
e dasNov1.scaffold_259847 3404 183 + 4110 I
|
|
e oryCun1.scaffold_136519 39457 0 + 60523 I
|
|
|
|
a score=2250.000000
|
|
s hg17.chr7 127479689 5 + 158628139 CGCTT
|
|
s panTro1.chr6 129893560 5 + 161576975 CGCTT
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165796522 5 + 196418989 CTCTT
|
|
i rheMac2.chr3 C 0 C 0
|
|
e rn3.chr4 56190687 0 + 187371129 C
|
|
s canFam2.chr14 52854540 5 - 63938239 CGCTT
|
|
i canFam2.chr14 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 1787 1394 + 4160 I
|
|
e dasNov1.scaffold_259847 3404 183 + 4110 I
|
|
e loxAfr1.scaffold_2979 21550 998 - 113413 I
|
|
e mm7.chr6 28996831 164 + 149646834 I
|
|
e bosTau2.chr4 19317339 815 - 69556449 I
|
|
e oryCun1.scaffold_136519 39457 0 + 60523 I
|
|
|
|
a score=3817.000000
|
|
s hg17.chr7 127479694 24 + 158628139 TGTTCTCCCCA----TTGATGTCATCAG
|
|
s panTro1.chr6 129893565 24 + 161576975 TGTTCTCCCCA----TTGATGTCATTGG
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165796527 22 + 196418989 TGCTCTCCCCA----CTGCTATTATC--
|
|
i rheMac2.chr3 C 0 I 2
|
|
s rn3.chr4 56190700 28 + 187371129 TACTTAAAAAAAAATCTGATGGCTGGAG
|
|
i rn3.chr4 I 13 I 3
|
|
s mm7.chr6 28996995 24 + 149646834 TGCTTCCCCCA----TTGCTGCTTGCAG
|
|
i mm7.chr6 I 164 I 3
|
|
s canFam2.chr14 52854628 24 - 63938239 CTTGCCCCCCA----CTGCCTTCATCAG
|
|
i canFam2.chr14 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 1787 1394 + 4160 I
|
|
e dasNov1.scaffold_259847 3404 183 + 4110 I
|
|
e loxAfr1.scaffold_2979 21550 998 - 113413 I
|
|
e bosTau2.chr4 19317339 815 - 69556449 I
|
|
e oryCun1.scaffold_136519 39457 0 + 60523 I
|
|
|
|
a score=16300.000000
|
|
s hg17.chr7 127479718 67 + 158628139 AGGGCTGTGGGCAGGCCTAATCTTGG------------CTCAGGAGGCCCT-----------CCAGCCTGGATCTAAAGA------------GCAGCAGATG
|
|
s panTro1.chr6 129893589 67 + 161576975 AGGGCTGTGGGCAGGCCTGATCTTGG------------CTCAGGAGGCCCT-----------CCAGCCTGGATCTAAAGA------------GCAGCAGACG
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165796551 64 + 196418989 AAGGCTGTGGGCAGGCGTGATTTTGG------------CTCAGGAGGCCCT-----------CCAGCCTGGATCTAGAGA------------GCAGCAG---
|
|
i rheMac2.chr3 I 2 C 0
|
|
s rn3.chr4 56190731 102 + 187371129 AAAGAAGAGAGAGTGTGTGCTTTGGGTCTCTTGGTAATCTCTGGTGTAATCAGCCCGGGAAGCTAGGCTGAGTTCAAAGATGGCGGCCTTGGCCAGCAGATG
|
|
i rn3.chr4 I 3 I 386
|
|
s mm7.chr6 28997022 49 + 149646834 ATGGCAG-------GCCTGACCCAGG------------CTCTGCTGTCTT------------CCAGTTCGGATCTGAAGA----------------------
|
|
i mm7.chr6 I 3 C 0
|
|
s canFam2.chr14 52854652 53 - 63938239 AAGGCTATAGGCAGGCCTGACCTTGG------------CCCAGCAAACCAT-----------CCAGCCTAGATCTA--------------------------
|
|
i canFam2.chr14 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 1787 1394 + 4160 I
|
|
e dasNov1.scaffold_259847 3404 183 + 4110 I
|
|
e loxAfr1.scaffold_2979 21550 998 - 113413 I
|
|
e bosTau2.chr4 19317339 815 - 69556449 I
|
|
e oryCun1.scaffold_136519 39457 0 + 60523 I
|
|
|
|
a score=29834.000000
|
|
s hg17.chr7 127479785 326 + 158628139 ggccaggctcggtggctcatgcctgtaatcccagcattttgggaggccgaggcgggtggatcacgaggtcaggagtttgagaccagcctggccaagatggtgaagcctcgtctctactaaaaatacaaaaattagccaggtgcggtggtgggcgcctgtatttccagctacccgggaggctgaggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgaggtcacgccactgcactctagcctgggcaacagagcaagactccgtcaaaaaaaaaataaaaaaataaaaaaataaaaaaaataaa
|
|
s panTro1.chr6 129893656 324 + 161576975 ggccaggctcggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagtttgagaccagcctggccaagatggtgaagcctcgtctctactaaaaatacaaaaattagccaggtgcggtggtgggcgcctgtatttccagctactagggaggctgaggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagccgaggtcacgccactgcactctagcctgggcaacagagcaagactctgtc--aaaaaaaataaaaaaataaaaaaataaaaaaaataaa
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 1787 1394 + 4160 I
|
|
e dasNov1.scaffold_259847 3404 183 + 4110 I
|
|
e loxAfr1.scaffold_2979 21550 998 - 113413 I
|
|
e canFam2.chr14 52854705 0 - 63938239 C
|
|
e rn3.chr4 56190833 386 + 187371129 I
|
|
e mm7.chr6 28997071 0 + 149646834 C
|
|
e rheMac2.chr3 165796615 0 + 196418989 C
|
|
e bosTau2.chr4 19317339 815 - 69556449 I
|
|
e oryCun1.scaffold_136519 39457 0 + 60523 I
|
|
|
|
a score=20720.000000
|
|
s hg17.chr7 127480111 94 + 158628139 GAGGAGCACACATCTCTGCCCATCCTAACTCCCACTTTGACATTGAGGTCCCCAGGATGGAGGGTCTGCCTCCATCTGCCTTGTCCCCT-GCAAT
|
|
s mm7.chr6 28997071 59 + 149646834 ----AGTGGACAGTTGTGCCCATCCCCACTCATTCCCTGAT--------------------GGG----------TCTGCCCTGTCCCCT-G-AAT
|
|
i mm7.chr6 C 0 C 0
|
|
s rheMac2.chr3 165796615 85 + 196418989 ---------ACATCTCTGCCCATCTCAACTCCCACTTTGACACTGAGGTCCCCAGGATGGAGGGTCTGCCTCTATCTGCCTTGTCCCCT-GCAAT
|
|
i rheMac2.chr3 C 0 C 0
|
|
s bosTau2.chr4 19318154 52 - 69556449 ----------------------------CTCCTACCTTAACATGGAGGCTCCCACT-----TGG----------TCTGCTGCATCCCCCAGGACA
|
|
i bosTau2.chr4 I 815 C 0
|
|
s canFam2.chr14 52854705 56 - 63938239 GAGA-----------------AGCACACCCCCTATCTTGGCATAGAGGC------------TGG----------TCTGCCTCATTTCCTAGGACC
|
|
i canFam2.chr14 C 0 C 0
|
|
s panTro1.chr6 129893980 94 + 161576975 GAGGAGCAGACATCTCTGCCCATCCTAACTCCCACTTTGACATTGAGGTCCCCAGGATGGAGGGTCTGCCTCCATCTGCCTTGTCCCCT-GCAAT
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 1787 1394 + 4160 I
|
|
e dasNov1.scaffold_259847 3404 183 + 4110 I
|
|
e loxAfr1.scaffold_2979 21550 998 - 113413 I
|
|
e rn3.chr4 56190833 386 + 187371129 I
|
|
e oryCun1.scaffold_136519 39457 0 + 60523 I
|
|
|
|
a score=49860.000000
|
|
s hg17.chr7 127480205 45 + 158628139 GGTGGGAAGGTGATGGAGCTCAAGTCTAGAGGCCACCAGCTTCTT
|
|
s panTro1.chr6 129894074 45 + 161576975 GGTGGGAAGGTGATGGAGCTCAAGTCTAGAGGCCACCAGCTTCTT
|
|
i panTro1.chr6 C 0 C 0
|
|
s canFam2.chr14 52854761 45 - 63938239 AGAGTGAAGGTGAAGGAGGTCATATCTGGAGGCCAGCAGCTTCTT
|
|
i canFam2.chr14 C 0 I 1
|
|
s bosTau2.chr4 19318206 45 - 69556449 AGAGGGAAGGTGAGGGAGCTTATGTCTGGAGGCCACCAGCTTCTT
|
|
i bosTau2.chr4 C 0 C 0
|
|
s rheMac2.chr3 165796700 45 + 196418989 GGCGGGAAGGTGATGGAGCTCAGGTCTAGAGGCTACCAGCTTCTT
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 28997130 44 + 149646834 GGAAGAAAGCTGAGGGTGCTCACACCT-GACATGACCAGTGTCAT
|
|
i mm7.chr6 C 0 I 2
|
|
s dasNov1.scaffold_259847 3587 45 + 4110 GGTGGGGATGGGGGGGAGCTCATGGGTGAAGGCCACCAGCTTCTT
|
|
i dasNov1.scaffold_259847 I 183 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 1787 1394 + 4160 I
|
|
e loxAfr1.scaffold_2979 21550 998 - 113413 I
|
|
e rn3.chr4 56190833 386 + 187371129 I
|
|
e oryCun1.scaffold_136519 39457 0 + 60523 I
|
|
|
|
a score=61038.000000
|
|
s hg17.chr7 127480250 171 + 158628139 AGGGAGGTAGGAGGTG------------GAGGGTGGGGTG---CGGGCCCTGCACACAACTG-----CCAAGTGAGGATGG-GGGTG--GG----G-----TCCACCTGAGGATAAGTAACAGTGA--------------GGCTGGTGCAG---AGGACCCAGGTGGAGGTAGACAGCA-GAATTTGTGGTGGGGTGGATGGCAC-ATTA------TATAAGCCTCTC
|
|
s panTro1.chr6 129894119 172 + 161576975 AGGGAGGTAGGAGGTG------------GAGGGTGGGGTG---CGGGCCCTGCACACAACTG-----CCAAGTGAGGATGG-GGGTG--GG---AG-----TCCACCTGAGGATAAGTAACAGTGA--------------GGCTGGTGCAA---AGGACCCAGGTGGAGGTAGACAGCA-GAATTTGTGGTGGGGTGGATGGCAC-ATTA------TATAAGCCTCTC
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165796745 172 + 196418989 AGGGAGGTAGGAGGTG------------GAGGGTGGGGTA---GGGGTCCTGCACACAACCA-----CCAAGTGGGGATGG-GGTTG--AG---GG-----CCCACCTGAGGATGAGTAATAGTGA--------------GGCTGGCGCAG---AGGACCCAGGTGGAGGCAGACAGCA-GAATTTGTGGTGGGGTGGATGGCAC-ATTA------TATAAGCCTCTC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 28997176 169 + 149646834 GGGGAATTAGGGTGTGATCTTGCCTGCAGGGAATGTGGTA-----------GCATAGACCTG-----CCCTCTGGGGATGT-AGGTG--AA---GG-----ATCACCTAACTAG-GGG----GTAG--------------GGGAGGCTCTGTCCAGGATCCAGATGAGATCAGAAAGGG-GG------GGGGGGGGTTCTGGTGC-CACCT-----TACAAGCCTCTT
|
|
i mm7.chr6 I 2 I 6
|
|
s oryCun1.scaffold_194876 4927 175 - 8791 AGGG-----GGGCGTGGCCTC-------GGGGAGGTGGC------------GCAGGGCCCTGCCGGACCTGCTAGGG--GC-AGGTG--GG---GGTGTGAGTCGCCTAAGGATCAGT----GCAG--------------GGGCAGCGCCAGCCAGGACCCGGGTGAAGTCAGAGAGCG-GGACAC-TGGCGGGGTGGGCGGTGC-CTTATGGGAGTATGAGCCTCTC
|
|
i oryCun1.scaffold_194876 I 541 I 2401
|
|
s canFam2.chr14 52854807 182 - 63938239 GGGGAAGGAAGGGGTGAGCTTGTCTGTGGTGAAGGCAGAG---------GTGAGGGGGCCTT-----CATAGAAGTGGGGCAGGGTTGGGG---GG-----GTCAGCTAAAGATGAATAGAGGTAG--------------GACCGGCACCC---AGGCCCCAGGTGAACCTGGGCAGTA-GAAACTGTGGTGGCATGGAAGGTGTGGTTA------TGTGCACCTCTC
|
|
i canFam2.chr14 I 1 C 0
|
|
s bosTau2.chr4 19318251 192 - 69556449 GGGGAACCAAGAGGCAAGCTTGTCTGTGGAGAAGGGGACG---------CTGCAAGGAACTG-----CCAAGTGGGGGAACAAGGCC--TG---CA-----GTCAACCCTGGATGAGTAGCGGGGGCGGGGGGGGGGGGTGGCCAGTGCCC---AGGACCCAGGTGAAGTCAG--AGCA-GGGGTCGTGACAGGGTTGATGGCAAGGTTA------CAGGATCCTCTT
|
|
i bosTau2.chr4 C 0 C 0
|
|
s dasNov1.scaffold_259847 3632 184 + 4110 GGGGAGGTAGAAGGCAGGTCTGTCTGTAGAGAGTGAGAAGGCAGGGGTGGGGCGGGAGGC-------CAGTGTGGAGCAGAGAGGTG--TGAGCGG-----CCCAGCTGGGGTGGCCT----GGAG--------------AGTCCGCT------GAGGCCCAGGTGAAGGCAGAGAGCGTGAAATTGTGGTGGGGTTGGTGGCGC-CTTCC-----TATGAGCCCCTC
|
|
i dasNov1.scaffold_259847 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 1787 1394 + 4160 I
|
|
e loxAfr1.scaffold_2979 21550 998 - 113413 I
|
|
e rn3.chr4 56190833 386 + 187371129 I
|
|
|
|
a score=-3971.000000
|
|
s hg17.chr7 127480421 30 + 158628139 TTGCTG-------CCCTGT-----------TTACTGAGATTGTTTCAt
|
|
s panTro1.chr6 129894291 30 + 161576975 TTGCTG-------CCCTGT-----------TTACTGAGATTGTTTCAT
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165796917 30 + 196418989 TTGCTG-------CCCTGT-----------TTACTGAGATTGTTTCAt
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 28997351 30 + 149646834 GTCTTG-------AGCCTT-----------TTTCTGAAGATGTGTTAC
|
|
i mm7.chr6 I 6 C 0
|
|
s canFam2.chr14 52854989 33 - 63938239 ---------------CTCCTGGCCTTGGAACTGTTGGAACTGTTTTCT
|
|
i canFam2.chr14 C 0 I 7
|
|
s bosTau2.chr4 19318443 4 - 69556449 ---------------CCAT-----------------------------
|
|
i bosTau2.chr4 C 0 C 0
|
|
s dasNov1.scaffold_259847 3816 30 + 4110 CTGCTGGCCTCCAGCCTGT-----------TTTCTGTGATT-------
|
|
i dasNov1.scaffold_259847 C 0 I 17
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 1787 1394 + 4160 I
|
|
e loxAfr1.scaffold_2979 21550 998 - 113413 I
|
|
e rn3.chr4 56190833 386 + 187371129 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=16473.000000
|
|
s hg17.chr7 127480451 81 + 158628139 tatcttttttggcttttgtttttaagagatggggtcttgctgtgtcacacaggctggagtgcactgtgtgatcatacc-----tca
|
|
s rheMac2.chr3 165796947 86 + 196418989 tatctcttttggtttttgtttttaagagatggggtctcgctctgtcacactgactggagtgcagtgtgtgatcatagttatgatca
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129894321 81 + 161576975 TATCttttttggcttttgtttttaagagatggggtcttgctgtgtcacacaggctggagtgcactgtgtgatcataac-----tca
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19318447 34 - 69556449 --TAGCCTTTAGC--CTGTTTTC-------------------------------------------TGTGATTACATT-----TCA
|
|
i bosTau2.chr4 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 1787 1394 + 4160 I
|
|
e dasNov1.scaffold_259847 3846 17 + 4110 I
|
|
e loxAfr1.scaffold_2979 21550 998 - 113413 I
|
|
e canFam2.chr14 52855022 7 - 63938239 I
|
|
e rn3.chr4 56190833 386 + 187371129 I
|
|
e mm7.chr6 28997381 0 + 149646834 C
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=26347.000000
|
|
s hg17.chr7 127480532 111 + 158628139 ctgcagcctcgacatcctgggctcaggcaaacctcccaccttggcctcccaagtagctgggaccacaagcgtttgccaccacactcagct--------atttttatttttattttta--tt
|
|
s panTro1.chr6 129894402 113 + 161576975 ctgcagcctcgacatcctgggctcaagcaaacctcccaccttggcctcccaagtagctgggaccacaagcgtttgccaccacactcagct--------atttttatttttattattatttt
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165797033 121 + 196418989 ctgcagcctcgacatcctgggctcaagcaaacttcccaccttggcctccccagtagctaggaccacaagcatttgccaccacacccagctaatttttaatttttttttttttttttttttt
|
|
i rheMac2.chr3 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 1787 1394 + 4160 I
|
|
e dasNov1.scaffold_259847 3846 17 + 4110 I
|
|
e loxAfr1.scaffold_2979 21550 998 - 113413 I
|
|
e canFam2.chr14 52855022 7 - 63938239 I
|
|
e rn3.chr4 56190833 386 + 187371129 I
|
|
e mm7.chr6 28997381 0 + 149646834 C
|
|
e bosTau2.chr4 19318481 0 - 69556449 C
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=25462.000000
|
|
s hg17.chr7 127480643 123 + 158628139 ttttttagagatggggtcttgctgtgtcgcccaggctggtcttgaactcctgggctcaagcgatcctcctgccttggcctcccaaagccctgggattataggctgagccaccacacccagccA
|
|
s rheMac2.chr3 165797154 122 + 196418989 ttttttagagatggggtcttgctgtgttgcctaggctggtcttgaactcctgggctcaagcgatcctcctgccttggcctcccaaagtcct-ggattataggctgagccaccgcacccagccA
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129894515 123 + 161576975 ttttttagagatggggtcttgctgtgtcgcccaggctggtcttgaactcctgggctcaagcaatcctcctgccttggcctcccaaagccctgggattataggctgagccaccacacccagccA
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19318481 28 - 69556449 TTTTCTAGTG--------------------------------------------------------------------CTCC------CCTGGGGGTAGGGG---------------------
|
|
i bosTau2.chr4 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 1787 1394 + 4160 I
|
|
e dasNov1.scaffold_259847 3846 17 + 4110 I
|
|
e loxAfr1.scaffold_2979 21550 998 - 113413 I
|
|
e canFam2.chr14 52855022 7 - 63938239 I
|
|
e rn3.chr4 56190833 386 + 187371129 I
|
|
e mm7.chr6 28997381 0 + 149646834 C
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=11030.000000
|
|
s hg17.chr7 127480766 46 + 158628139 CATTTCATCTGTGCAGCTCCAGGGGCTCCACATTCTAC-TCTTCTCA
|
|
s bosTau2.chr4 19318509 27 - 69556449 -------------------GTGGAGCT-CATTCACTGGTTTTTCTCT
|
|
i bosTau2.chr4 C 0 C 0
|
|
s dasNov1.scaffold_259847 3863 36 + 4110 -----------TGCTGCCCTGGGGGCTCCGTTGTCTGGTTTTTCTCT
|
|
i dasNov1.scaffold_259847 I 17 C 0
|
|
s rheMac2.chr3 165797276 47 + 196418989 CGTTTCATCCGTGCAGCCCCAGGGGCTCCACGTTCTACTTTTTCTCA
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129894638 46 + 161576975 CATTTCATCTGTGTAGCCCCAGGAGCTCCACATTCTAC-TTTTCTCA
|
|
i panTro1.chr6 C 0 C 0
|
|
s canFam2.chr14 52855029 43 - 63938239 CATT----TCCTTTTCCCTGGGAGGCTCCATTTTCTGGTTTTTCTCC
|
|
i canFam2.chr14 I 7 C 0
|
|
s rn3.chr4 56191219 39 + 187371129 -------CTGGAGCTGCCTTAGGGCCTCCCCTCGCCGC-TGTTCTTT
|
|
i rn3.chr4 I 386 C 0
|
|
s mm7.chr6 28997381 39 + 149646834 ----TGCCTGGAGCTGCCTCAGGGTCTCTCCT---CTC-TGTTCTTT
|
|
i mm7.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 1787 1394 + 4160 I
|
|
e loxAfr1.scaffold_2979 21550 998 - 113413 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=49723.000000
|
|
s hg17.chr7 127480812 136 + 158628139 TTTCTTCTCCAGGGTACCCA----------TGGCAAGGGATGAGGGT--AGAAG---ATGGGGCA--GCCAGGCCTTGATTAAAGGA---------------GAAGGAAGGCAG-CCTGT-GGAGA-------------GGGCAGCCCAGGGAGT-----GCAGA--------GAGAAGTGGGCCATGAGGGAGAC-
|
|
s mm7.chr6 28997420 121 + 149646834 TAACCTCTCTAGTGTGCCC-----------TGGCAGGGAGTCACAATGGAGAAG---GTGAGGCA--------CATGGGTAGATGGC---------------AGGGGAAGGCAG-CCGGA-GAGGA---------------GCTTTCTAGT------------GA--------GACAACCTGAACATAAAACAGA--
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56191258 138 + 187371129 TAACCTCTCCAGTGTGCCC-----------TGCCAGGGAGTCACAGTGGAGAAG---GGGAGGCA--T---GGCATGGGTAGATGGCCACGGGGGTTGGGGAAGAGGCAGGCAGCCCTCA-GGTGA---------------GCTTTCCAGT------------GA--------GAAGACCTGA--GTAAAACAGA--
|
|
i rn3.chr4 C 0 C 0
|
|
s canFam2.chr14 52855072 141 - 63938239 TTTCTTCTCCAGTGCACCAGTATAGGGGAATAGTAGGGGATGCTGGTAAAGATG---ATGGGGAGTGGCAGGGTCTTAATTAGGGAG---------------AGGGAAAG-------TGACAGTGAAAGCTGGTGAAC-AGGAAGTCCAGAGGAT-----GAGCA------------------------GGGCACC-
|
|
i canFam2.chr14 C 0 C 0
|
|
s panTro1.chr6 129894684 136 + 161576975 TTTCTTCTCCAGGGTACCCA----------TGGCAAGGGATGAGGGT--AGAAG---ATGGGGCA--GCCAGGCCTTGATTAAAGGA---------------GAAGGAAGGCAG-CCTGT-GGAGA-------------GGGCAGCCCAGGGAGT-----GCAGA--------GAGAAGTGGGCCATGAGGGAGAC-
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165797323 136 + 196418989 TTTCTTCTCCAGGGCACCCA----------TGGCTAGGGATGAGGGT--AGAAG---ATGGGGCA--GCAGGGCCTTGATTAAAGGA---------------GAAGGAAGGCAG-CCTGT-GGAGA-------------AGGTGGCCCAGGGAAT-----GCAGA--------GAGGAGCAGGCTGTGAGGGAGAT-
|
|
i rheMac2.chr3 C 0 C 0
|
|
s dasNov1.scaffold_259847 3899 158 + 4110 TTTCTTCTCCAGTGCACCCC----------TGGCAGGGGATGGTAGTAGAGATG---ATGGGGAATGGTGGGCTCTTAATTAAAGGA---------------GAAGGAAGGCAG-CTTGA-GGCAAAAGCTGGTGAGCGCGGCGACCCAGCCAGTGGTGAGCAGG--------GAGGAGTGGGTGGAGAGAGAGAC-
|
|
i dasNov1.scaffold_259847 C 0 n 0
|
|
s bosTau2.chr4 19318536 160 - 69556449 TTTTTTCTCCAGTGCCCCTG----------TGGCAGGGGATGCTGGTAGACCTG---ATGGGGCATGGTCAGGTCTTAATTCAAGGA---------------AAGGAAAGGCAG-TCTGA-AGCACAAGTTAGTTGGC-AGGGCATCTAGAGGAT-----GCACAGACCCACAGAAGAGTGGGTGGTGGGGAAGCC-
|
|
i bosTau2.chr4 C 0 C 0
|
|
s echTel1.scaffold_20104 3181 137 + 4160 TCTCTTCCCT--------------------GGGGATGGGGCGATGGCATAGATGGGTGTGGGGATGGCAGGGGTCTTAATTAAAGGA---------------GAAGGGAGGC-G-CCTGA-AACATGACCTGGTCATC-AGGTGGCC-------------CCAGA--------GGAGAGCGAGTGTTGGGGGGTGGT
|
|
i echTel1.scaffold_20104 I 1394 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e loxAfr1.scaffold_2979 21550 998 - 113413 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=21825.000000
|
|
s hg17.chr7 127480948 98 + 158628139 AGCAGAGTGCAGGCT-GCGTCCC----AAATGAGCATACAGCCCACTGTGAGCCCACC--ATCTTCCT------AGA-GACCCCTCTCCTCTCC----AGGAGCTGCTTCAGTAGC
|
|
s rheMac2.chr3 165797459 98 + 196418989 AGCAGAGTGCAGGCT-GCGTCCC----AAATGAGCACACCGCCCACTGCGAGCCCACC--ACCTGCCT------AGA-GACCCCTCTCCTCTCC----AGCATCTGCTCCAGTAGC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129894820 98 + 161576975 AGCAGAGTGCAGGCT-GCGTCCC----AAATGAGCACACGGCCCACTGTGAGCCCACC--ATCTTCCT------AGA-GACCCCTCTCCTCTCC----AGGAGCTGCTTCAGTAGC
|
|
i panTro1.chr6 C 0 C 0
|
|
s canFam2.chr14 52855213 94 - 63938239 AGCAGAGTGAATGGG-AGGCCTT-GGCCAGTGTGCAAGCCACCC--------ATTGGT--ACCCCCGG------AGGTACCCATCTCCCTCCCC----AGGCCCCGCTTGAATAAT
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19318696 110 - 69556449 AGCGGAGTGGAGGGG-AGACCTCAGGGTGGAGAGCAAGCCTCCCCCTTCATGAGCAGC--ACACACAG---TCCAGCTACCCCCTACCCTCTCCCAGTAGTGCCCCCTTCCTCTCC
|
|
i bosTau2.chr4 C 0 C 0
|
|
s rn3.chr4 56191396 84 + 187371129 AGCAGAGGGCAGG------------------GAGGTAGCCTCCCCAT----GCCTACCC-ATCCTCCT------GAATGGCCCCTCTTCCTTCCA---AGGCTCTGCTGCAATAGT
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 28997541 84 + 149646834 AGTAGAGGGCAGG------------------GAGGTCGCCGCCCAGT----GCCCACCCTGTCCTCCC------AGATGGTCCCTTTTCTTTCC----AGGCTCTGCTGCAATAGT
|
|
i mm7.chr6 C 0 C 0
|
|
s echTel1.scaffold_20104 3318 84 + 4160 TGCAGGGTGCAGGCCAGTGTCCC--------------TCCTCCTTCC----TCCTGCC--ACACCCCTGCCTCCAGGCTTCCCCTTGCCCCTGC----AGGCTCTGCT--------
|
|
i echTel1.scaffold_20104 C 0 I 503
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e dasNov1.scaffold_259847 4057 0 + 4110 I
|
|
e loxAfr1.scaffold_2979 21550 998 - 113413 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=120952.000000
|
|
s hg17.chr7 127481046 212 + 158628139 ACTCA---------GAGGAAAGAATGATGC--------TGTATCAACATTTCAGCA-GCTCATCTTTTAACTCTAAGAAAATGGCAGCTCCTAAATGTTCAA--AACTGCTTTGGAAACTTCTGGAG---AGAGGTTTTGCAGCTCAGGCAGACAGCTGATCGCGGCCTTTCTTCCACCC--------CAACCCATGCTCTCCCCATGCTCTC----CTGCCACAG-CTGCAGCG--GGC-CCCTGGGTCC
|
|
s rheMac2.chr3 165797557 212 + 196418989 TCTCA---------GAGGAAAGAATGATGC--------TGTATCAACATTTCATCA-GCTCATCTTTTCACTCTAAGAAAATGGCAGCTCCTAAATGTTCAA--AACTGCTTTGGAAACTTCTGGAG---AGAGGTTTTACAGCTCAAGCAGACAGCTGACCGCGGCCTTTCTTTCACCC--------CAACCCATGCCCTCCCCGTGCTTTC----CTGCCACAG-TTGCAGTG--GGC-CCTTGGGTCC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129894918 212 + 161576975 ACTCA---------GAGGAAAGAATGATGC--------TGTATCAACATTTCAGCA-GCTCATCTTTTAACTCTAAGAAAATGGCAGCTCCTAAATGTTCAA--AACTGCTTTGGAAACTTCTGGAG---AGAGGTTTTGCAGCTCAGGCAGACAGCTGATCGCGGCCTTTCTTCCACCC--------CAACCCATGCTCTCCCCATGCTTTC----CTGCCACAG-CTGCAGCG--GGC-CCCTGGGTCC
|
|
i panTro1.chr6 C 0 C 0
|
|
s canFam2.chr14 52855307 212 - 63938239 GGGCAGAGAGAAATAAAGGAGACAGGATGT--------TGTATTAACATGTCAACA-GTTCACCTTTTAACTCTCAGACAATGACAGCTCCTAAATGTTCAA--AACCATTTTGGAAACTTCTAGAGAGAAAAGGTTTTGCAGCCCAGGCAGCTGGCTGACAATCACCTTTGTCCTCCCT-GTTCCTCCCACCTTGGCTCT--------------------------TTCCACCT-GGGCACTGCTCGGTC
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19318806 182 - 69556449 AGGC--------------------------------------TCAACATTTCAGCA-GTTC---------TTCTGAGAAAAAGACAGCTCCTTAA-------------ACATTTAAAACTTCTAGAGGGAAAAGGCTTTGCAGCCCAGGCAGATGGCTGACACCTGCCTTTTTCCCTCATGGCTCCTCCCACCTCCACTCT--CTACTCACTC----TTGTCAGTGGCTCCAGCC--AGCACTCCTGGGTC
|
|
i bosTau2.chr4 C 0 C 0
|
|
s rn3.chr4 56191480 189 + 187371129 -CCCA----GAAGTGAGGAACGTGGTGTACTACCTCAGTGTGTCAGTATGTTAGCA-ACTCCTCTGCCAGCTCCTAGGCTACAACAACTCCTAA---GTTAACCACTCACATCAGAAACTTCC--AA---AAAGGTTTTTTTG--TGGCCAGGTAGCTGCCAGTAACCTTTCTCCCTGCC--------C-ACCCATCCATC------------------------------------GGC-TCCCTGGAAT
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 28997625 183 + 149646834 CCCCA----GACGTGAGGAACACAGTGTAC--------TGCATCAGTATTTTAGCA-ATTCCTCTGCCAGCTCCGAGGCTATAACAACTCGTAAGTGGTTAA--ACTCAATTCAGGAACTTCT--AG---AAAGGTTTTTTTG--TGGCCGGGTAGCTGCCAGTAGCCTTGCTCCTTGCC--------C-ACCCACTTCCT------------------------------------CAC-TCCCTGGAAT
|
|
i mm7.chr6 C 0 C 0
|
|
s echTel1.scaffold_20104 3905 220 + 4160 ---------ACCTAGGAGACACGGTGCTGT--------TGGGCCAACATTTCGGTGCCTTTATCTTTAAACTCTTATACAATGACAGCTCTCAAACGTTTAA--AACCACTTTAGAAGCTTCCAGAA-GAAAAGGTTTTGCGGCCCAGGCTGATGGCTGACAGCATCCATTCTCCCTCCT--------C-CCCTCCCCCAGCCCCGTGATCTCTCCACCCCTCCCCAGCCCAGCC-GTGC-AGCTGAATTC
|
|
i echTel1.scaffold_20104 I 503 n 503
|
|
s loxAfr1.scaffold_2979 22548 200 - 113413 -------------------------GATGT--------TGAACCAACATTTCAGCA-GTTTATCTTTTAACTCGTAGGAAATGACAACTCCTAAATGTTCAA--AACCTTTTGGGGAACTTCCTGAA-GAAAAGGCTACATGGCTCAGGTTGACCACCAACAGCATCCTTTTCTGCTCTC--------C-CCCTCTGCCCTCTCCACTGTCTC----CTGCTGGCAGGTCCTACCAGGGC-GCCCGGGACC
|
|
i loxAfr1.scaffold_2979 I 998 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e dasNov1.scaffold_259847 4057 0 + 4110 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=52502.000000
|
|
s hg17.chr7 127481258 60 + 158628139 TACATTTGCAGCCC------------TTTGTCTCTGAGCTCAGA-----CTTCCAATTCCAAGCGGCAGCTGGGCAG
|
|
s rheMac2.chr3 165797769 60 + 196418989 TACATTTGCAGCCA------------TTTGTCTCTGAGCTCAGA-----CTTCCAATTCCAAGCGGCAGCTGGACAG
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129895130 60 + 161576975 TACATTTGCAGCCC------------TTTGTCTCTGAGCTCAGA-----CTTCCAATTCCAAGCAGCAGCTGGGCAG
|
|
i panTro1.chr6 C 0 C 0
|
|
s canFam2.chr14 52855519 59 - 63938239 TACTTGTGTGGCCC------------TGTTTTTCTGAA-TGTGA-----CTCCCAATCTCAGCTGTTAGCTGGATAG
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19318988 77 - 69556449 TCTGTCTGCAGCACCCCCTCCCCTTTTTTTTTCCTGAACTGAGACCCCCCCCCCAGTTCCAGCTGTCAGCGGGACAG
|
|
i bosTau2.chr4 C 0 C 0
|
|
s rn3.chr4 56191669 64 + 187371129 CACATCCATGGCCC------------CTTTCTCTTGAGCTCCAACCAA-CCCCCAATTCTAACTGGCAACTAGAAAG
|
|
i rn3.chr4 C 0 I 360
|
|
s mm7.chr6 28997808 65 + 149646834 CACAGCCATGGCCC------------CTTTCTCTTGAGCTCCAACCAACCCCCCAATTCTAGCTGGCAACTAGAAAG
|
|
i mm7.chr6 C 0 I 295
|
|
s loxAfr1.scaffold_2979 22748 57 - 113413 -ATCTCTACAGCCC------------TTTCTTTCTGAACTCAGA------GTCCAGATTCAGCTGTCCCCCTG-CAG
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_259847 4057 0 + 4110 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=156079.000000
|
|
s hg17.chr7 127481318 319 + 158628139 GCTCACCAGCATGTCCAGCCAGT----ACTAGGACATC-AGCAGGAGCC---CAACCACCTCTTTCCAAAATCTCTCCTCATGTCTCTCCTAGTTTCCATCTCCATCCTTCTAGTCAGCCAGGCTGAAAACATTTGC-------TCCTCAGGGTGCA-----------GAAGGGAAAGCTTTGCCTCCCTTCCTGGTGCTCACTGCCC-CTGCGATTCCAGCCCAAGCCCTCCCCGGCTC-----CTCACC------CTGGTGTCAGCTGGAAGCCACCATCTCCTAAACCCACCTGtgttct------tcca---cctctgccagggctgc-cctctcctccaccttcacaaactcaat-----tcctacc
|
|
s panTro1.chr6 129895190 319 + 161576975 GCTCACCAGCATGTCCAGCCAGT----ACTAGGACATC-AGCAGGAGCC---CAACCACCTCTTTCCAAAACCTCTCCTCATGTCTCTCCTAGTTTCCATCTCCATCCTTCTAGTCAGCCAGGCTGAAAACATTTGC-------TCCTCAGGGTGCA-----------GAAGGAAAAGCTTTGCCTCCCTTCCTGGTGCTCACTGCCC-CTGCGATTCCAGCCCAAGCCCTCCCCGGCTC-----CTCACC------CTGGTGTCAGCTGGAAGCCACCATCTCCTAAACCCACCTGtgttct------tcca---cctctgccagggctgc-cctctcctccaccttcacaaactcaat-----tcctacc
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165797829 319 + 196418989 GCTCACCAACATGTCCAGCCAGT----ACTAGGACATC-AGCAGGAGCC---CAACCACCTCTTTCCAAAACCTCTCCTCATGTGTCTCCTAGTTTCCATCTCCATCCTTCTAGTCAGCCAGGCTGAAAACACTTGC-------TCCTCAGGGTGCA-----------GAAGGAAAAGCTTTGTCTCCATACCTGGTGCTCACTGCCC-CTGCGATCCCAGCCCAAGTCCTCCCCCACTC-----CTCATC------CTGGTGTCAGCTGGAAGCCGCCATCTCCTAAACCCAcctgtgttct------tctg---cctctgccagggctgc-cctctcctccaccttcacaaactcaat-----tcctacg
|
|
i rheMac2.chr3 C 0 C 0
|
|
s bosTau2.chr4 19319065 299 - 69556449 GCCCACCTG-AGGTCCCACCAAT----ACTAGCAAATC-AGCATGAATG---------TTTGTTCATCAAACCTCTCCTCATGCCTTTCCCAATTTCCTGCTGCCTCCTTCTTGTCACCTGGGCTGCAAGCCTAAGCCTGGAAATGATCAGAGTGCCTCACTTCCACAGAAAG--AAGCCTGGCCTCCCTGCCTAGCACTCA----------------CAGCTCCACCCCT--------------CCCATCACACCTCCCATGCCAGCCAGGAGCCACCATTT--------------------------TCTGAGCCGTCTGCTGGGGCTTCCCCACTCCTCCACCTTCACAGACACAATCCTACTCCTCCA
|
|
i bosTau2.chr4 C 0 I 212
|
|
s canFam2.chr14 52855578 345 - 63938239 GTCTGCCTG-AGGTTCCACCAGCCGTAACCAGCAAATCAAGCAAAACTGAGCAAATCAGTGGTGTTGCAACTCCCTCCCCGTGCCTTTGCCAATCTCCATCTCCATCCTTCTTGTCACCTGGGCTGAAAGCATTAGCCTGGGAATGGTCAGAGCTCCTCACTTCCAT-GAAAG--AAGCCTAGCCTCCTTACTCGGCACTCG----------------GGGCCCAAGCCCTCCCCACCTCCTG-GCCCATCACACCTCTCATGCAGGCTGTGAGCCACCGTGTTCTGAGCTCACAGGGGTTCTTCAGCCTCTGAGCCCTCGGCT-GGGCTGCTCCTCTCCTCCACCTTCACAAACCCAAT-----TCCTCCA
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 22805 317 - 113413 ------------GTCTCTCCAGT----GC-AGCCAGTC-AGCATGCCCA---AAGCCTTCTCATTCCCAAACCTCTCC---TGTCTCTCCCAATTTCTGTCTCCAGCCTTCTTGTCAGCCAGGCTGAAACCATCAGCTTGGGAGACATCTGTGCTTCTCGCTTCCAC-AGAGG--AGGTCTCA-CTTCTTACCTGGTACTCACAGCCCTCAACAACCCCAACCCAACAATTCTCTAGCTTCAGTGCCCAGCACACCTCTCATGCCAACTGTGAGCTGCCTGGCCCTGGACCCAACTATGTTCTTCTGCCTCTGCACCATCTGCCAGGGCTGC-Cccaacccctacc--------------------------
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_259847 4057 0 + 4110 I
|
|
e rn3.chr4 56191733 360 + 187371129 I
|
|
e mm7.chr6 28997873 295 + 149646834 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=109448.000000
|
|
s hg17.chr7 127481637 112 + 158628139 cattctcaggtcccttatcaaatgccatctcctccatgatgc-ctccctgattccccTGCTGGAaataatggtgataacagctaag--gcattggggttggctacgtg-ccaggca
|
|
s panTro1.chr6 129895509 112 + 161576975 cattctcaggtcccttatcaaatgccatctcctccatgatgc-ctccctgattccccTGCTGGAAATAATGGTGATAACAGCTAAG--GCattggggttggctacgtg-ccaggca
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165798148 112 + 196418989 cattctcaggtcccttatcaaatgccacctcctccgtgatgc-ctccctgattcctctgctggaaatAatggtgatgacagctaag--gcgttggggttggctatgtg-ccaggca
|
|
i rheMac2.chr3 C 0 C 0
|
|
s bosTau2.chr4 19319576 114 - 69556449 CATTCTCAGGGCCCTTATTAAATGCAACCTCCTCCAAAATGC-TTCCTCCATTCCTTCACTGGAAATAACAGTGACAACGgctaacatgtattgggattgaccatgtg-ccaggca
|
|
i bosTau2.chr4 I 212 C 0
|
|
s canFam2.chr14 52855923 114 - 63938239 GACTCTTATGGCCCTTATGAAATGCCACCTCCTCCAAGACAC-CTCCTTGATTCCTTAGCTGGAAATAGTGGtgataacagctaaggtgtattggggttgaccatatg-ccaggca
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 23122 116 - 113413 cactctcagggcccttatcaaatgctgcctcctccacgaagctctccctggttccttaACTGGAAATCACGGTGGTAACAGCTGACATTCACTGGGGTTGGTTATGGGACCAGGCA
|
|
i loxAfr1.scaffold_2979 C 0 I 954
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_259847 4057 0 + 4110 I
|
|
e rn3.chr4 56191733 360 + 187371129 I
|
|
e mm7.chr6 28997873 295 + 149646834 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=89276.000000
|
|
s hg17.chr7 127481749 231 + 158628139 aggagttggcactttacatgctttatctcatttcagccacataacatcgacaggt-ggcattatgattcatatcatccccatctgatagccaggaaaactgagtcccagagaggtt-----------------------------------------------------------agcca-ctttccta----------------------------------------------gggccCTGTG-------------------------------------CTCTGACTCAAGCATAGCTCTGAGGAACTCTAGCATTCATCAGTTTAAGCACCATGACTTTCTTTGCTGAGTCACCCAAGGCATTTCTTC-ATT
|
|
s panTro1.chr6 129895621 231 + 161576975 aggagttggcactttacatgctttatctcatttcagccacataacatcgacaggt-ggcattatgattcatatcatccccatctgatagccaggaaaactgagtcccaaagaggtt-----------------------------------------------------------agcca-ctttccta----------------------------------------------gggccCTGTG-------------------------------------CTCTGACTCAAGCATAGCTCTGAGGAACTCTAGCATTCATCAGTTTAAGCACCATGACTTTCTTTGCTGAGTCACCCAAGGCATTTCTTC-GTT
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165798260 232 + 196418989 agaagttagcactttacctgctttatctcatttcagccacataacagcgacaggt-ggcattatgattcatatcatccccatctgatagccaggaaaactgagtcccagagaggtt-----------------------------------------------------------agcca-ctttccta----------------------------------------------gggccctgtg-------------------------------------ctctgactcaagcacagctctgaggaactctagcattcctcagtttaagcatcatgactttctttgctgagtcacccaAGGTATTTCTTCTGTT
|
|
i rheMac2.chr3 C 0 C 0
|
|
s bosTau2.chr4 19319690 354 - 69556449 cagagcaagaattct----ccatcacct--------------aacagccacaggtaggaattatgatttgtttcatccccaatttacagccaagcaaacggagtctccaagagatcaGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggagaagggaaaggctacccactctagtattctggcctggagaattccatggactgtatagtccatggggtcacaaagagtcagacataactgagtgactttcacttTCACATGCTCTAACTTAAACATAGTTCTGCTGAGCTCTAGAGCTCATAGTTTTA---TTCATGAGTCCCTCCCTTGAGTTATCCAAGGCATTTTATTTCT-
|
|
i bosTau2.chr4 C 0 I 1
|
|
s canFam2.chr14 52856037 230 - 63938239 aggagttagcactttgcacacattacctcatttcatccacaggacagcctcaagtgggaatgacagtttgtatcattcccattttatagctgagaaaattgagtgtgagagagttc-----------------------------------------------------------ggcaaacttgccca----------------------------------------------aggtcctgaa-------------------------------------ctccaactcaagcagagttctgctgaactctagagctcataattttA---CACACGTCTCCCTCCCCTGAGTTACCCTGGGCATGCTGTCTGT-
|
|
i canFam2.chr14 C 0 I 1
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_259847 4057 0 + 4110 I
|
|
e loxAfr1.scaffold_2979 23238 954 - 113413 I
|
|
e rn3.chr4 56191733 360 + 187371129 I
|
|
e mm7.chr6 28997873 295 + 149646834 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=10115.000000
|
|
s hg17.chr7 127481980 31 + 158628139 TAAATGTTCTTCCTTGGCCAGGCGCAGTGGC
|
|
s panTro1.chr6 129895852 31 + 161576975 TAAATGTTCTTCCTTGGCCAGGCGCAGTGGC
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165798492 31 + 196418989 TGAATGTTCTTCCTTGGCCGGGCGCATTGGC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s canFam2.chr14 52856268 22 - 63938239 TAAACATTCTTCCTTG---------AGTTAC
|
|
i canFam2.chr14 I 1 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_259847 4057 0 + 4110 I
|
|
e loxAfr1.scaffold_2979 23238 954 - 113413 I
|
|
e rn3.chr4 56191733 360 + 187371129 I
|
|
e mm7.chr6 28997873 295 + 149646834 I
|
|
e bosTau2.chr4 19320044 1 - 69556449 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=158488.000000
|
|
s hg17.chr7 127482011 610 + 158628139 TCAggcccaatgcggtggctcacgcctgtaatctcaacactttgggaggccgaggtgggcagataatctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaaatgaggctgggcgtgatgactcacacctgtaatcccagcactttgggaggccaaggcaggtggattacatgaggtcaggagttcgagaccagcctggccaacatggtgaaatcctatctctattaaaaatacaaaaaattagccaggcatggtggcaggcacctgtaatcccagctacttgggaggctgaggcaggaaaatggcttgaacccgggaggtggaggttgcagtgagccaaggttgcaccattgcactccagcctgggcaaaaagagggaaacatcgtctaaaaaagaaaaaaaaaaaattagccaggctgggtggtgcatgcccgtaattccagctactcaggaggatgaagcaagagaattgcttgaacccaggaggcagagattacagtgagctgagatcacaacactgcactccagcctaggtaaagaacaagactccatctcaaaaataaataaataaaaa
|
|
s rheMac2.chr3 165798523 609 + 196418989 TCAggcccgatgcggtggctcacgcctgtaatctcaacactttgggaggccgaggtgggcagatcatctgagatcaggagttcaagaccagcctggccaacatggtgaaa-cctgcctctattaaaaatacaaaaaaatgaggccgggcgtggtggctcacacctgtaatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaattagctggacatggttgcaggcgcctataatcccagctacttgggaggctgaggcaggagaatggcttgaacctgggaggcagaggttgccgtgagccgagattgcaccattgcactccagcctgggaaacaagagggaaacacagtattaaaaaaaaaaaaaaaaaattatccgggcctggtggtgcatgcctgtaattatagctactcaggaggatgaagcaagagaattgcttgaacccaggaggcagagattacagtgagctgagatcacaccactgcactccagcctaggtaaaaaacaagactccatctcaaaaataaataaataaaaa
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129895883 610 + 161576975 TCAggcccaatgtggtggctcacgcctgtaatctcaacactttgggaggccaaggtgggcagatcatctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaaatgaggctgggtgtgatgactcacacctgtaatcccagcactttgtgaggccgaggcaggtggattacatgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaattagccaggcatggtggcaggcacctgtaatcccagctacttgggaggctgaggcaggaaaatggcttgaacccgggaggtggaggttgcagtgagccaagattgcaccattgcactccagcctgggcaaaaagagggaaacatcgtctaaaaaagaaaaaaaaaaaattagccaggctgggtggtgcatgcccgtaattccagctactcaggaggatgaagcaagagaattgcttgaacccaggaggcagagattacagtgagctgagatcacaccactgcactccagcctaggtaaagaacaagactccatctcaaaaataaataaataaaaa
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_259847 4057 0 + 4110 I
|
|
e loxAfr1.scaffold_2979 23238 954 - 113413 I
|
|
e canFam2.chr14 52856290 0 - 63938239 C
|
|
e rn3.chr4 56191733 360 + 187371129 I
|
|
e mm7.chr6 28997873 295 + 149646834 I
|
|
e bosTau2.chr4 19320044 1 - 69556449 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=109276.000000
|
|
s hg17.chr7 127482621 123 + 158628139 taaaTGTTCTTCCTTGCAATGA------AGTTAAATATGTAA-------ATTCTCAAACCAGTTGCTTAAGGGC---ACAGTTTTGTTCTTTACCT--------------------------------ATATTTTTAACAAATATTTTA------------------------------TGTAAGTAGTTGAC-AAAATCAA
|
|
s bosTau2.chr4 19320045 129 - 69556449 TAAACATTCTTCCTTGCATTGTATTGATAGTTAATTAGGTAA-------ATTCTTAAACC---TGTTGAAGAGCACAACAGTTTTGTTCTTTACTT--------------------------------TTATTTTTAACAAATAACACA------------------------------TGTAAGTAGTTGAC-AATGCTGA
|
|
i bosTau2.chr4 I 1 C 0
|
|
s rheMac2.chr3 165799132 123 + 196418989 taaaTGTTCTTCCTTGCACTGA------AGTTACATATGTAA-------ATTCCCAAACCAGTTGCTTAAGGGC---ACAGTTTTGTTCTTTACTT--------------------------------ATATTTTTAACAAATATCTTA------------------------------TGTAAGTAGTTGAC-AAAATCAA
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129896493 124 + 161576975 taaaTGTTCTTCCTTGCATTGA------AGTTAAATATGTAA-------ATTCTCAAACCAGTTGCTTAAGGGC---ACAGTTTTGTTCTTTACCT--------------------------------ATATTTTTAACAAATATTTTA------------------------------TGTAAGTAGTTGACAAAAATCAA
|
|
i panTro1.chr6 C 0 C 0
|
|
s dasNov1.scaffold_102887 9454 128 - 10616 --AATGTTCTTCCTTGCATTGT------AATTAATTATGTAAATAGCTGATTCTTAAGCCAGTTCCTTAAGAGC---AAAGTTGTTTTCTTTGCTC--------------------------------TTATTTTCAACAAATGATATA------------------------------TGTAAGCAATTGAC-AAAATCAA
|
|
i dasNov1.scaffold_102887 I 2281 C 0
|
|
s canFam2.chr14 52856290 93 - 63938239 ----------------------------AGCTAATTATGCAA-------ACTGGT--------TGTTCAAGAGC---ACAGTTTTGTTCTTTACTT--------------------------------TTGTCTCTAACAAATAATATG------------------------------TGTTAATAGTTGAC-AACATTAA
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 24192 191 - 113413 TAAACGTT-TACCTTGCACtat------aattaattatataaatatCTGCTTCTCAAACCAGTTCCTTGAGAGC---ACAGTTTTATTCTATATTTTATTTAATGCAAATACTCAAAGAAAATATTTATTTTATTTTACAAGTAGTATATGTAAAATCTTTATTTTATCTTACAAATAGTGTAAGTAATTGAC-AAAATCAA
|
|
i loxAfr1.scaffold_2979 I 954 I 436
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e rn3.chr4 56191733 360 + 187371129 I
|
|
e mm7.chr6 28997873 295 + 149646834 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=194151.000000
|
|
s hg17.chr7 127482744 224 + 158628139 ATACTGT-GTACACTACCGAGGCTTCCCTGGGAAAGCCATCAG-CCTCTGCCCCATCCCTTCCCACTCCTGA-TTCCACTTTCCTGTGTTTCCATATCTTTTT-CATGTCTGTTTCTGGCCCACAGTGGGCGATCAATACATGTTAGCCACCAACCATCAAACCTATATTGAG--TAATTATGGTATGTCAGGCACTATGCTCAATGAAATTGTAttaggcttgtacaaa
|
|
s bosTau2.chr4 19320174 183 - 69556449 ATACTGTGGTGTACTACCTGGGCTT-CCTGGGAAAACCACCAG--TTCAGCCCCAACCATCCCCACTCCGGA-TCCCAGTTTCCTGTGGTTGCATGTCTCTTT-CATCTCTGCCTCTAGCCCACAGTGGACCATCCATACATGTTAGATGTCAACCATCAAATAGATGTTGAG--TAACCATAATGCttc----------------------------------------
|
|
i bosTau2.chr4 C 0 I 475
|
|
s rheMac2.chr3 165799255 224 + 196418989 ATACTGT-GTACGCTACCTAGGCTTCCCTGGGAAAGCCATCAG-CCTCTGCCCCATCCCTTCCCACTCCTGA-TTGCACTTTTCTGTGGTTCCATATCTTTTT-CATGTCTGTTTCTGGCCCACAGTGGGCGATCAATACATATTAGCAGCCAACCATCAaccctatattgag--taattatggggtgtcaggcactatgctTAATGAAATTGTAttaggtttgtacaaa
|
|
i rheMac2.chr3 C 0 I 335
|
|
s panTro1.chr6 129896617 224 + 161576975 ATACTGT-GTACACTACCGAGGCTTCCCTGGGAAAGCCATCAG-CCTCTGCCCCATCCCTTCCCACTCCTGA-TTCCACTTTCCTGTGGTTCCATATCTTTTT-CATGTCTGTTTCTGGCCCACAGCGGGCGATCAATACATGTTAGCCACCAACCATCAGACCTATATTGAG--TAATTATGGTATGTCAGGCACTATGCTCAATGAAATTGTAttaggcttgtacaaa
|
|
i panTro1.chr6 C 0 I 59
|
|
s dasNov1.scaffold_102887 9582 205 - 10616 ATACTGTGGCATACTACCAAGCTTT--CTGGGAAAACCACCAGCCTCCCGCCCCATCC---TCTACTCCCAATTCCCACTTTCCTGTGGTTCTATGTATTTTT-CATCTCTGTCCCTGGCCCACCATGGGTGACCAATATATGTTAGGGGTCGACCATCAGATATATTTTAGG--TAACGATTATGTGCCCAGCCTTATGCTTGATGAAATTG-----------------
|
|
i dasNov1.scaffold_102887 C 0 I 4
|
|
s canFam2.chr14 52856383 200 - 63938239 ATACTGCAGTGTATTCCCTGGGCTT--CTGAGAAAACCAGCAGTCTTCAGCCTTGTCCCTTCCTAGTCCCGATTCCCACCCTCCTGTGA-----------TTT-CATCTTTGTACGTGGCCCACAGTGAGCGATCAGTACACATTAGCTGtcaaccagctgctatccactgag--taactattatgtgtcaggcgctgtgcttagtgAAGTTGTAG--------------
|
|
i canFam2.chr14 C 0 I 1
|
|
s loxAfr1.scaffold_2979 24819 209 - 113413 ATACTTG-ATATGCT-CTCAGGCTT-CCTGGGAAAACCACCAGCCTCCTATCCCATCCCTTCCCACTCCTGAGTTCC--TTTCCTAT--TTCCATGTCTTTTTGCATCTCTGTACCTGGCCCACAATGGGTGGTAAATACAT-TTAGCTGTCAATTATCAAATATATTTTGAGTATAACTATGATGTGTCAAGCATAATGCTAGATTAAATTGTATT-------------
|
|
i loxAfr1.scaffold_2979 I 436 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e rn3.chr4 56191733 360 + 187371129 I
|
|
e mm7.chr6 28997873 295 + 149646834 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=0.000000
|
|
s hg17.chr7 127482968 59 + 158628139 agtaattgtggtttttaagagtaatggcaaaaacggcagttactttcgcaccaacTATT
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_102887 9787 4 - 10616 I
|
|
e loxAfr1.scaffold_2979 25028 0 - 113413 C
|
|
e canFam2.chr14 52856583 1 - 63938239 I
|
|
e rn3.chr4 56191733 360 + 187371129 I
|
|
e mm7.chr6 28997873 295 + 149646834 I
|
|
e rheMac2.chr3 165799479 335 + 196418989 I
|
|
e bosTau2.chr4 19320357 475 - 69556449 I
|
|
e panTro1.chr6 129896841 59 + 161576975 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=37733.000000
|
|
s hg17.chr7 127483027 39 + 158628139 TGCTGCCTTGAATTATTCCTCCTCTC-CTC--ATCCCTAAAC
|
|
s rheMac2.chr3 165799814 39 + 196418989 TGCTGCCTTGAATTATCCCTCCTCTC-CTT--GTCCCTAAAC
|
|
i rheMac2.chr3 I 335 C 0
|
|
s panTro1.chr6 129896900 39 + 161576975 TGCTGCCTTGAATTATTCCTCCTCTC-CTC--ATCCCTAAAC
|
|
i panTro1.chr6 I 59 C 0
|
|
s canFam2.chr14 52856584 40 - 63938239 TGCTGTCTTGAATTATCCCTCCCCTCTCTG--GTCCCTAAAC
|
|
i canFam2.chr14 I 1 C 0
|
|
s dasNov1.scaffold_102887 9791 41 - 10616 TGCCATCTTGAATTATCTCTCCCCTC-CCCAAATCCTTAAAC
|
|
i dasNov1.scaffold_102887 I 4 C 0
|
|
s loxAfr1.scaffold_2979 25028 39 - 113413 TGTTATCTTGAATTATCCCTCCCTTT-CCA--GGCCCTAAAC
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e rn3.chr4 56191733 360 + 187371129 I
|
|
e mm7.chr6 28997873 295 + 149646834 I
|
|
e bosTau2.chr4 19320357 475 - 69556449 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=282309.000000
|
|
s hg17.chr7 127483066 345 + 158628139 CCTG-------------CTCCTCCCAGCCATTCTTCCTCCCCT-----TCTTGGGCCATGGCCAG-----GCCCCACCCAGGTACTAAGACTCAGGT-------------------------------------------GAACCAAGGAAGACTTAATGCCCACTCTTTTCTGATGCCCATGTTGGCATGTGT-TAAGtcggttagcattaagtttggctgcatttagcagagacccaaaagaacagtgccttttaaaaggcagaggttatgtctctcacacacacccagcaca-----------------------a--gtccaagaccagcatggcatctcagctccatcaa--cctcaggaacc-gagct-cctgcagctccctgccctgcagttgataaggtgaggtctttgtcctcctggttcaagatggtgcta
|
|
s rheMac2.chr3 165799853 366 + 196418989 CCTGCTCCTC-------CTCCTCCCAGTCATTCTTCTTTCCCT-----TGTTGGGCCATGGCCAG-----GCCCCACCCAGGTACTAAGACTTAGGT-------------------------------------------GAACCAAGGAAGACTTAATGCCCACTCTTTTCAGATGCCCATGTTGGCATGCGT-TAAGTTGgttagcattaagtttggctgcatttagcagagacccaaaagaacagtggcttttaaaaggcagaggttatgtctctcacacacacccagcacaagtccaga--------gataggta--gtccaagaccagcatggcatctcagctccatgaa--cctcaggaacc-gagct-cctgcagctccctgccctgctgttgataaggtgaggccttcatccccctggttcaagatggtgcta
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129896939 345 + 161576975 CCTG-------------CTCCTCCCAGCCATTCTTCCTCCCCT-----TCTTGGGCCATGGCCAG-----GCCCCACCCAGGTACTAAGACTCAGGT-------------------------------------------GAACCAAGGAAGACTTAATGCCCACTCTTTTCTGATGCCCATGTTGGCATGTGT-TAAGtcggttagcattaagtttggctgcatttagcagagacccaaaagaacagtggcttttaaaaggcagaggttatgtctctcacacacacccagcaca-----------------------a--gtccaagaccagcatggcatctcagctccatcaa--cctcaggaacc-gagct-cctgcagctccctgccctgcagttgataaggtgaggtcttcgtcctcctggttcaagatggtgcta
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19320832 346 - 69556449 CCTG-------------CTCTTACCAGCCACTCCCCACGAACTGAAAATCTCAGGCCATGGCCAG-----GCCCCTCCCTGGTAGTGACACTGAAGT-------------------------------------------GAACCAAAAAAGACT-----------------TGATGTCTGTGTC--CAGGTGAATAAattaattagtgttaagtttggccacgtttagcagagatccaaaataacagtggcttcaccaagacagagccgacg--tctctcacacactcagcacaagtccagg--------gataggtg--gtccaca-caagtatgtcatctcagctccaggaagtgctcagagacc-tggccacctccagctccctatgtcaccattcacacagtgaagccatcatcctcatgatccgaga-ggcacaa
|
|
i bosTau2.chr4 I 475 I 237
|
|
s canFam2.chr14 52856624 335 - 63938239 TCTG-------------CTCTTGCCAGCCATCT---------------TCTTGGGCCACAGCCAG-----GCCCCACCCAGGT------ACTCAGGT-------------------------------------------GAACCCAGGAACACTCAACATCCACTTTGTCCTGATGCCCATGTC--CAGGCATATAAatcaactagcattaagtttggttgcatttagcagagacccaaaataacagtggcttaaccaagacagaggttatgtctctctcacacacatagcacaagtctgggtggggcgtggtgggggcagtctgcagccagtatgtca-ctcagctccacaaagtcctcagggacc-tgg---tctccagctctctagcccaccattcataagg-----------------tgatccaagatggcacca
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_102887 9832 375 - 10616 -CTGCTCTTTCCAAATGCTCTTCCCAGCCTTTCCCCATCCCCA-----TCTGGGATCCCAGCCAACACCTCCTCCCCCCAACTCCTGAGACTCAGGTGAAAGGTTGGAGACACGGT-------------GTCTCACTGGAGAATCAAGGAAGACTTGCCGTCTACTCTTTTCTGATGCCCATGTTGGGATGTGT-TAAGttagtgagcattaagtttggctgcatttagcagagacccaaaataatggtagtttaaacaagacagaggttatggctctcacgt-------gcgagagtccaga--------gatgggtc--gtccaaggccagtttggcgtctttgct---------------------------cctccagctccttgctcccccattcacagggtgcggcttca--ccgcatggctcaagatggtgcta
|
|
i dasNov1.scaffold_102887 C 0 C 0
|
|
s loxAfr1.scaffold_2979 25067 352 - 113413 CCTG-------------TTCTTCCCAACTATCC--CCTTCCCC-----TTCTGGGGCATGGCCAG-----GCCCCATCCAGGTACCGCAACTCAGGTGAAAGTTTGGAGACTCAGTTTGTGGCAAGATAATCTCCCCGGAGAACCAA-AAAGACTTGACATCCGCTCTGTTCTGATGCCCATGT---GGCGTGC-TAAattagttagcgttatgtttggctgcatttagcagagacccaaaataacagtggtcccaa------------------------------------------------------gataggta--gttcaaggctgggatggcatctttgacccacaaagtcctcagggcccttggct-ccttcagctccctactccaccattcagaa--tgagacccttgtcctcctgctccaagatggcgcta
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e rn3.chr4 56191733 360 + 187371129 I
|
|
e mm7.chr6 28997873 295 + 149646834 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=74858.000000
|
|
s hg17.chr7 127483411 86 + 158628139 gaatgttggc----------taccatatctatagtccaggcatcagaatggagcaagggatgaaaaaggaagagatgaaggcacacgacaggttcc
|
|
s rheMac2.chr3 165800219 85 + 196418989 gaacgttggc----------taccatatctacagtccaggcatcagaatggagcaagggatgaaaaaggaagagaagaaggcacacggca-gttcc
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129897284 86 + 161576975 gaatgttggc----------taccatatctatagtccaggcatcagaatggagcaagggatgaaaaaggaagagatgaaggcacacgacaggttcc
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19321415 80 - 69556449 gaacacagac----------taccgcatccataattcaggcatcaggatagaggaggggacagaaaagggaggagcaaaggcacacggtg------
|
|
i bosTau2.chr4 I 237 C 0
|
|
s canFam2.chr14 52856959 79 - 63938239 gaaccccggc----------taccacatctgcagctcaggcat-gggatgggggaagggatgaaaaaggaagaggcagaggcacacaacc------
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_102887 10207 96 - 10616 gaactctggccaccggctggtgccacaggcacattccaggcatcggggtggtgggaggcatggaaaaggaggaggcaaaggcacaccaaagggccc
|
|
i dasNov1.scaffold_102887 C 0 C 0
|
|
s loxAfr1.scaffold_2979 25419 81 - 113413 gaactctggc----------taccacatgc---caccaagtatcagggtggaggaaagagtggaaa--ggagtagcaagggctcacagcagcagcc
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e rn3.chr4 56191733 360 + 187371129 I
|
|
e mm7.chr6 28997873 295 + 149646834 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=351065.000000
|
|
s hg17.chr7 127483497 349 + 158628139 tgagagctggcacaggacacttctgcttatatttcactggccagaacttagtcacatggtcacacctagttgggagactctgagaagtaaagtatttattctagatggccatatccctacc-taagacttggagttttctatgactggggaagaacggaagacaagatattgggaaa-gactagcagcctctactaAAAGGGTGATCtgtg----------------------------------------------------------------t--------tgat------------------------------------gtgc---------------------------------------gtg-tgtgtgtg-------------atg--------tttgtatgagcatgtgtgtta--tgtgttgtgtgt--TGGTGGGGCA--GATTCTTGCGAGCACTTTGGTCTCAGATGGACCTGCTACCAGTTCTCTCTGCAGACCCCC-ATAGGTTTCTCCTA
|
|
s panTro1.chr6 129897370 349 + 161576975 tgagagctggcacaggacacttctgcttatatttcactggccagaatttagtcacatggtcacacctagttgggagactctgagaagtaaagtatttattctagatggccatatccctacc-taagacttggagttttctatgactggggaagaatggaagacaagatattgggaaa-gactagcagcctctactaAAAGGGTGATCTGTG----------------------------------------------------------------T--------TGAt------------------------------------gtgt---------------------------------------gtg-tgtgtgtg-------------atg--------tgtctatgagcatgtgtgtta--tgtgttgtgtgt--TGGTGGGGCA--GATTCTTGCGAGCACTTTGGTCTCAGATGGACCTGCTACCAGTTCTCTCTGCAGACCCCC-ATAGGTTTCTCCTA
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165800304 345 + 196418989 tgagagctggcacaggacacttctgcttatatttcactggccagaatttagtcacatggccacacctagttgggagactctgaaacgtaaagtagttattctagatggccatatccctacc-taagacttggagttttctatgactggggaagaacggaagacaagatactgggaaa-gactaacagcctctactaAAGGGGTGATCtgtg----------------------------------------------------------------t--------tgat-------------------------------------------------------------------------------gtg-tgtatgtg-------------acg--------tgtgtatgagtatttgtgtta--tgtgttgtgtgt--TGGTGGGGCA--GATTCTTGCGAGCACTTTGCTCTCAGATGGACCTGCTACCAGTTCTCTCTGCAGACCCTC-ATGGGTTTCCCCTA
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 28998168 341 + 149646834 TGGGAACTGCCACATGGCCCTTCTGCTTTTATTTAATCCATCAGTATTTGGCTGCATAACTGTACCTAA-TGGTAGAAGC----AAGCCTGGCAGTTATTCTCCACAGCCACACGCCTCCCATAGGACTTGGAATGTCTTCAAATTCGGACAGAAAGAAAAATAAGACACGGGGAGA-AACTAGCAGTCTCCAC-AGCATGGCTATGTATC----------------------------------------------------------------T--------TGAT------------------------------------GTGT---------------------------------------CTG-TGTATGTGTGTGTTC------ATG--------T-TACATAAGCA-------------TGTTACGTGC--TGTTGGGGCATCGATCCGTAACATGGCTTTGATCTCAGATGGATCTGTGACCACTTCTTTCTGCAACCCCAG-ATGCGTGTCCCAGA
|
|
i mm7.chr6 I 295 C 0
|
|
s rn3.chr4 56192093 338 + 187371129 TGAGAGCTGCCACATGGCTCTTCTGCTTTTGGTTGGATGATCAGCATTTGGCTGCATACCTGTGCCTAA-CGGCAGAAGC----AAGCCTAGTGGTTATTCTCCATGGCCACACCTCTCCCTTAGGACTTGGCGT-CCTTTCAACTGGGAAAGAAAGAAAAATAAGACATGGGGAGA-AACTAGTAATCGCCAC-AACATGGCTATGTACC----------------------------------------------------------------T--------TGAT------------------------------------GTGT---------------------------------------TAG-TGTATGTGTGCCT--------GTG--------T-TGCATAAGCA-------------TGTTATGTGC--TGTTGGGACATCAGTTCTTAACATGACCTTGATCTCAGGTGGATCTGTGACCACTTCTCTCTGCAAGCGCCG-ATGTATGTCCCAGA
|
|
i rn3.chr4 I 360 C 0
|
|
s bosTau2.chr4 19321495 480 - 69556449 caagaactgccacatcgaacttctgcttgtattc-agttgcc------------cagaatca-------------gcagctgggaaataaagtatttattctgaatggccacctctctatc-taa-acttgga-tgttctgttaattgggaagaagg---gaatagatcctggagacgaatcaccagcctctAGCAAAAGGGTTAGACGTGCGATAggacttctctggtggtccagtggttaagactccatgcttccaatgcaagggacccaggtt--------tgatcctttgtcggggaactaagatcccatgtgcctcaaagtgcagcaaaaaaaaTTTTTTTTAATTAAAAGGGTTAGATGAATTG-TGTGTGTGTGCCCACCTGAGTATGCTGTGTTCTACATGTGAGCAAGTG-GTTT--CATGTTGTGTGTG-TGGTGGACCG--GCGTCTCCTCATCACTTTGATCTCAGATGGGCCTGTTACGAGTTCTCTCTGCAGCGCCCCCAGGGAGCTCCCCTA
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52857038 335 - 63938239 caagagctgccacacagcacccatgctgatactt-aatggccagactttagtggcatagccaaacctagttgggggaagctgagaagtgtagtatttattctcgatgg-cacatcaccatc-taa-acttgga-tattctattacttgggaagaaggaaagaatagatattggagac-aactacctgcttctactaAAAGGGTTTGATGTG----------------------------------------------------------------T--------TGAT------------------------------------GTGT---------------------------------------TTG-TGTATGTG-------------ATG-TGTGTTGTGTATGCAAGCACATG---------TATTGTGTGTGTTGGTGGGCCA--CGTTCTCTCCTCCACTTGGATCTCAGATGGACTTGGTATGGATTCTCT-------------ACAGAACTCCCCTA
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_102887 10303 310 - 10616 cgagagctaccacatgacccttctg------tgtcattgccc-------------------atacctagttgggagaagcttagagaggtagtatttattctggacgctcacgaccctttc-taaaatttggg-agtcctgttattggggaagaagggaagaatcgatgttggggac-aactagcagcctcCACTCCAGG---TCTGTGCA----------------------------------------------------------------C--------TGAC------------------------------------gtgt---------------------------------------ttg-tgtgtgtgt------------gtg--------cgtgtgtgagtg-------------tgatgtgtgt--TAGTGGGGCA--GGTTCTTGCCATCACTCTGATCTCCAGTGGACCTGTTATCACTTCTCTCTGCCCACTCTG-GTGGCTGCCCCCCA
|
|
i dasNov1.scaffold_102887 C 0 n 0
|
|
s loxAfr1.scaffold_2979 25500 358 - 113413 tgaaagctgccatgtgacacttccgcttatatttcattggtcaaaattgagccgcacggccatacctagttgggagaagctgggaaatgtagcatttctgttgaatggccacatctccatc-taaaacttgaa-agttctggtactgggaaagaaaggaagagtagatattggggac-aactagcagcatctatgacaAAGGTtatgtgtg----------------------------------------------------------------tgtgtgtcgtgtt------------------------------------gtat---------------------------------------gtgttgtgtgtga------------atg--------tgagtatgagcatgcgtgttaggtgttttgtgtgt--TGGTGGG-CA--GATTCTCCCCATCAGTTTGCTCTCAGATGGACCTGTTATCAATTCCCTCTGCCCACTCTG-GTGGTCCCCCATA-
|
|
i loxAfr1.scaffold_2979 C 0 I 203
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=256952.000000
|
|
s hg17.chr7 127483846 168 + 158628139 AACCTGGCCT-CTCCT-----ATTAGGCAGCCTTACTCAGCGGCAGCTTCTCAGCTCCATGTTTTCAAGGAACCACAATTTATTTCCAGCATCCACTGAAGCATATTATCAGTGGTGATAGAGGGGGCTTGTAAAACTGTTTTTCCACTTAGGTATTAGAGGGTGGCCATTATT
|
|
s panTro1.chr6 129897719 168 + 161576975 AACCTGGCCT-CTCCT-----ACTAGGCAGCCTTACTCAGCGGCAGCTTCTCAGCTCCATGTTTTCAAGGAACCACAATTTATTTCCAGCATCCACTGAAGCATATTATCAGTGGTGATAGAGGGGGCTTGTAAAACTGTTTTTCCACTTAGGTATTAGAGGGTGGCCATTATT
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165800649 168 + 196418989 AACCTGGCCT-CTCCT-----ATTAGGCAGCCTTACTCAGCGGCAGCTTCTCATCTCCATGTTTTCAAGGAACCACAATTTATTTCCAGCATCCACTGAAGCATATTATCCATGGTGATAGAGGCGGCTTATAAAACTGTTTTTCCACTTAGGTATTAGAGGATGGCCATTATA
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 28998509 168 + 149646834 AGCCTGGCCT-ATCAT-----CTTCAGCATACTTCCTCAGCGACAGCATCTCAGTCCCATGTTTCCAGAGCACTGTGATTTATTGCCAGCATCCACTGAGGCATATTATCCATGTCGACAGAGAGGCCTTGTAAACCTGCTTGTCTGTTCTGATAGTACAGGGCGGCCATTGTG
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56192431 166 + 187371129 AGCCTGGCCT-ATCAT-----CTTCCGCACACTTACTTGGCAGCAGCATCTCGATTCCACATTTCCAGGGCGCTGTGATTTATTGCCAGCATCTACTGAGGCATAGTGTCCATGCCG--AGAGAGGCCTTGTAAACCTGCCTGTCCATTCTGATAGTACGGGGTGGCCATTGTG
|
|
i rn3.chr4 C 0 C 0
|
|
s bosTau2.chr4 19321975 167 - 69556449 ACCCTGGCCT-GTCCT-----CTTAGGCAGGCTTACTCAGCAGCAGCTTCTCAGTTCCACATCT-CAAGGAACTGTGATTTATTTTCAGTGCCCACTGAAGCGTATTATCCATGGTGATCGAGGGGGCTAGTAAAACTGTTTTTCCACTCAGGTATTACAAGGTGGCCATGACA
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52857373 163 - 63938239 AATCTGGCCTCCTCCT-----CTTAGGCAGATTTAC----CAGCAGCTTCTCAGTTCCACATTT-CAAGGAACTACAATGTATTTTCTGCATCCACTGAAGCATATTATCAGCGGTAATAGA-GGGGCTTGTAAAACTGTTTTCCCACTCAGATGTTACATGGTGGCCATTATG
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 26061 171 - 113413 AACCGATGCT-CTCCTTACCCCTTATGCAGACTGACTTGGCAGCAGCTTCTCAATTCCATGTTT-CAGTGAGCTGCAATTTATTGTCAGCATCCACTGAAACACACAATCAGAGGAGATAGA-GGGGCCTGTAAAACCGCTTTCCCGTTCAGGTATTAGAGGGCGGCCACTGTG
|
|
i loxAfr1.scaffold_2979 I 203 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_102887 10613 0 - 10616 I
|
|
e oryCun1.scaffold_194876 5102 2401 - 8791 I
|
|
|
|
a score=74289.000000
|
|
s hg17.chr7 127484014 53 + 158628139 TGAGAGTGACTATG-----ACCACAGTTAATCTGGTAATAAATTCTCTTGGGTAGGAG
|
|
s panTro1.chr6 129897887 53 + 161576975 CGAGAGTGACTATG-----ACCACAGTTAATCTGGTAATAAATTCTCTTGGGTAGGAG
|
|
i panTro1.chr6 C 0 I 294
|
|
s rheMac2.chr3 165800817 53 + 196418989 TGAGAGTGACTATG-----ACCACAGTTAATCTGGTAATAAATTCTCTTGAGTAGGAG
|
|
i rheMac2.chr3 C 0 I 292
|
|
s rn3.chr4 56192597 54 + 187371129 TGAAAATAGCTACGGTATAACCATAGTTAATCTGCTAGTAAG----CTTGGTCAGGAA
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 28998677 54 + 149646834 TGAAAATAGCTACGATACGACCGTCGTTAATGTGCTAGTAAA----TTTGGTCGGGAA
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_194876 7503 45 - 8791 TGACCGTGACTAGG-----ACCGGCGCTAACCTGGCAAGAGATGC-TCTGG-------
|
|
i oryCun1.scaffold_194876 I 2401 I 172
|
|
s bosTau2.chr4 19322142 53 - 69556449 TGCGAGTGACTATG-----ATCAGAGTTAATCTGGTAATAAATTCTCTTGGGAAGGAG
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52857536 53 - 63938239 TGAGAGCGACTACG-----AGCAGAGTTAATCTGGTAATAAATTCTCTCGGGAAGGAG
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 26232 45 - 113413 TGAGAGTGACCACG-----ACTAGAGCTAATCTGGGAATAAATTCTTGTG--------
|
|
i loxAfr1.scaffold_2979 C 0 I 344
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_102887 10613 0 - 10616 I
|
|
|
|
a score=-4798.000000
|
|
s hg17.chr7 127484067 16 + 158628139 GAAAGG------------------------AAAGGATGCT
|
|
s mm7.chr6 28998731 40 + 149646834 GGAGGGTGTCAGCAACACATAAATCTTAGAAATGAATGCC
|
|
i mm7.chr6 C 0 I 950
|
|
s rn3.chr4 56192651 6 + 187371129 GGAGGG----------------------------------
|
|
i rn3.chr4 C 0 I 974
|
|
s rheMac2.chr3 165801162 16 + 196418989 gaaagg------------------------aaaggatgct
|
|
i rheMac2.chr3 I 292 C 0
|
|
s panTro1.chr6 129898234 16 + 161576975 gaaagg------------------------aaaggatgct
|
|
i panTro1.chr6 I 294 C 0
|
|
s loxAfr1.scaffold_2979 26621 13 - 113413 ---------------------------aggaattgatgtt
|
|
i loxAfr1.scaffold_2979 I 344 C 0
|
|
s canFam2.chr14 52857589 34 - 63938239 ----GGTGTCAT--ACCCAAGAATCCTAGAAAAGGGTACC
|
|
i canFam2.chr14 C 0 I 15
|
|
s bosTau2.chr4 19322195 36 - 69556449 ----GGTATCATTAACACATAAATCCTAGAAAAGGTTACC
|
|
i bosTau2.chr4 C 0 I 15
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_102887 10613 0 - 10616 I
|
|
e oryCun1.scaffold_194876 7548 172 - 8791 I
|
|
|
|
a score=3084.000000
|
|
s hg17.chr7 127484083 31 + 158628139 TTAAGG---------------------------------AA-----GCATCTTGCCAGG-AGACACAAAG
|
|
s rheMac2.chr3 165801178 31 + 196418989 ttaagg---------------------------------aa-----gcaattttcccag-agacacaaag
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129898250 31 + 161576975 ttaaag---------------------------------aa-----gcatcttgcccgg-agacacaaag
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19322246 49 - 69556449 TCAGGG---------------GGAGGACCCCAAAATACCAG-----GCACCCTCTTGAG-ATGCCCAGGG
|
|
i bosTau2.chr4 I 15 I 18
|
|
s canFam2.chr14 52857638 50 - 63938239 GCAGGGGGAACACCCAGAAAT---------------ACCAG-----GCACCCTGTTGAGAATGCCCAAGG
|
|
i canFam2.chr14 I 15 I 242
|
|
s loxAfr1.scaffold_2979 26634 36 - 113413 ttatgg---------------------------------aagttcggtaacttgcccag-aggcaggcag
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_102887 10613 0 - 10616 I
|
|
e rn3.chr4 56192657 974 + 187371129 I
|
|
e mm7.chr6 28998771 950 + 149646834 I
|
|
e oryCun1.scaffold_194876 7548 172 - 8791 I
|
|
|
|
a score=4299.000000
|
|
s hg17.chr7 127484114 56 + 158628139 CTAA---------CAAGAGTGGA-GCCTGCAG-----------------------------------CT------GGAGCCGCAGAGCCTAATCACTACACCCGCCC--
|
|
s rheMac2.chr3 165801209 55 + 196418989 ctaa---------caagagtgga-gcctg-ag-----------------------------------ct------ggagcctcggagcctaatcactacacccgccc--
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129898281 56 + 161576975 ctaa---------caagagtgga-gccTGCAG-----------------------------------CT------GGAGCCGCAGAGCCTAATCACTACACCTGCCC--
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19322313 106 - 69556449 CTAGATTCAGAGTTGGCTACAGG-TAGTGTTGCTGAAGCATTTCAAGTTCTGCCAAATAATTACACAATTAAAAAAAAAAGCTGACATTTTCCCCCTGTCCCCCACC--
|
|
i bosTau2.chr4 I 18 I 216
|
|
s canFam2.chr14 52857930 83 - 63938239 CTAA---------TGGGAACGGA-TTCTGTAG----GGAAGTTAAGAATTTGCC---TAGGGACTCACT------GAAACCCTGGGACCTAACCACTATACTTTCC---
|
|
i canFam2.chr14 I 242 C 0
|
|
s loxAfr1.scaffold_2979 26670 59 - 113413 ctaa---------tgaagacagaggccagCTG-----------------------------------CT------GAAGCCTCAGGGCCTAACCACTGCACTTCCACCC
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_102887 10613 0 - 10616 I
|
|
e rn3.chr4 56192657 974 + 187371129 I
|
|
e mm7.chr6 28998771 950 + 149646834 I
|
|
e oryCun1.scaffold_194876 7548 172 - 8791 I
|
|
|
|
a score=63805.000000
|
|
s hg17.chr7 127484170 82 + 158628139 ATCTCTGCTAGGGTTTCATGACTTCGTATCG-GGGATTAGCAGTATTTAACTCTGTTGCACAAACATTTGGTGTA-----TTATTCAG
|
|
s rheMac2.chr3 165801264 82 + 196418989 atctctgctaggGTTTCATGAAATCGTATTG-GGGATTAGCACTATTTAACTCTGTTACACAGACATTTGGTGTA-----TTACTTAG
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129898337 82 + 161576975 ATCTCTGCTAGGGTTTCATGACTTCGTATCG-GGGATTAGCACTATTTAACTCTGTTGCACAAACATTTGGTGTA-----TTATTCAG
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19322635 88 - 69556449 ACTTTTGCTAGGGTTTCCTGGACTCATGCTGAGGGATTAGCACTATTTAATTCCATTCTTCAAGCATTTGGTGGAAATGTTTACTCAG
|
|
i bosTau2.chr4 I 216 C 0
|
|
s canFam2.chr14 52858013 87 - 63938239 ACCTTTGCTAGGGCTTCATGGAATCATACTG-GGGATTAGTTCTATTTAACTCCATTCCAAAAACCTTTGGTGGAAATGTTTACTCAC
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 26729 77 - 113413 ACCTCTGCAAAAGTTTCACGGAATTTT-----AAGATT-GTACTATTGAACTTCATTCTGCAAACATTTGGTGTG-----TTACTTAG
|
|
i loxAfr1.scaffold_2979 C 0 I 573
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_102887 10613 0 - 10616 I
|
|
e rn3.chr4 56192657 974 + 187371129 I
|
|
e mm7.chr6 28998771 950 + 149646834 I
|
|
e oryCun1.scaffold_194876 7548 172 - 8791 I
|
|
|
|
a score=27950.000000
|
|
s hg17.chr7 127484252 28 + 158628139 GTAACAAGTAGCTAATAGAGGAAGTTTT
|
|
s rheMac2.chr3 165801346 28 + 196418989 GTAACAAGTAGTTAATAGAGGAAGTTTT
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129898419 28 + 161576975 GTAACAAGTAGCTAATAGAGGAAGTTTT
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19322723 28 - 69556449 AGAATGAGGAGTTAATAGAGGTAGTACT
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52858100 28 - 63938239 ATAATCAGTAGTTAATAGAGGGAGCTTC
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 27379 28 - 113413 gtaACGAGTAGTTAATAGAGGAAGTTTT
|
|
i loxAfr1.scaffold_2979 I 573 I 1631
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_102887 10613 0 - 10616 I
|
|
e rn3.chr4 56192657 974 + 187371129 I
|
|
e mm7.chr6 28998771 950 + 149646834 I
|
|
e oryCun1.scaffold_194876 7548 172 - 8791 I
|
|
|
|
a score=17886.000000
|
|
s hg17.chr7 127484280 47 + 158628139 ACTTTTTTAAGACATAA--------------------ATTTGCCTTTTCCCAAATTACTTGGTACAT
|
|
s rheMac2.chr3 165801374 47 + 196418989 ACTTTTTTAAGACATAA--------------------ATTTGCCTTTTCCCAAATTACTTGGTACAT
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129898447 47 + 161576975 ACTTTTTTAAGACATAA--------------------ATTTGCCTCTTCCCAAATTACTTGGTACGT
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19322751 60 - 69556449 GAATTTTTAGGAGCCAAAACAAGCACAAAACCATTTGAAGTACCCTCTCTCAAATTACTT-------
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52858128 67 - 63938239 CACTTTTTAAGAGAGAAAACAAGCATAGAAACATCTGATGTGCCTCCTCCTGAATTACATAGGATAT
|
|
i canFam2.chr14 C 0 I 192
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_102887 10613 0 - 10616 I
|
|
e loxAfr1.scaffold_2979 27407 1631 - 113413 I
|
|
e rn3.chr4 56192657 974 + 187371129 I
|
|
e mm7.chr6 28998771 950 + 149646834 I
|
|
e oryCun1.scaffold_194876 7548 172 - 8791 I
|
|
|
|
a score=51211.000000
|
|
s hg17.chr7 127484327 81 + 158628139 A--GTACTTTTCATGTTTGAAGTTGA-GATGTGGGTACAATACCATAGCTTTATTC-----CAGAGCAGGGTATTTGTTTCCAAATGCC
|
|
s panTro1.chr6 129898494 80 + 161576975 A--GTACTTTTCATGTTTGAAGTTGA-GATGTGGGTACAATACCATAGC-TTATTC-----CAGAGCAGGGTATTTGTTTCCAAATGCC
|
|
i panTro1.chr6 C 0 I 109
|
|
s rheMac2.chr3 165801421 80 + 196418989 A--GTACTTTTCATGTTTGAAGTTGA-GATGGGGGTACAATACCATAGCTTCATTC-----CAGAGCAGGGTATTCA-TTCCAAATGCC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s oryCun1.scaffold_194876 7720 81 - 8791 A--ATATTTTTCACAGCGGAAGCTGACGCAGAGGGTGTGACTTCACAGTCTCAGCC-----TAGAG-AGGATGTGAGCTGCCAAGCCCC
|
|
i oryCun1.scaffold_194876 I 172 C 0
|
|
s bosTau2.chr4 19322811 85 - 69556449 ---ATATTTTTCATACATGAAATAAT-TATGGGGGTACAATCTCTTAGCTTCATCCTAGAATAGAGCAGGGTGTTTGTTCCCAAGTGCC
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52858387 82 - 63938239 AGGATA-TTTTCATATTCGAAGTCGA-TGTGGGGGTGCAATCGCATAGCATCAGCC-----TAGAGCAAGGTATTTGTTTCCAAAGGCC
|
|
i canFam2.chr14 I 192 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_102887 10613 0 - 10616 I
|
|
e loxAfr1.scaffold_2979 27407 1631 - 113413 I
|
|
e rn3.chr4 56192657 974 + 187371129 I
|
|
e mm7.chr6 28998771 950 + 149646834 I
|
|
|
|
a score=15555.000000
|
|
s hg17.chr7 127484408 38 + 158628139 ATGTTCCCAGCAGCTGCCCTTGACTGGGAATTGGGGTG
|
|
s rheMac2.chr3 165801501 38 + 196418989 ATGTTCCCAGCAGATGCCCTTGACTGGAAATTGGGGTG
|
|
i rheMac2.chr3 C 0 C 0
|
|
s oryCun1.scaffold_194876 7801 38 - 8791 GTGTTCCCCAGAGCCAGCCTGGATGAGGGACTGGGGTG
|
|
i oryCun1.scaffold_194876 C 0 C 0
|
|
s bosTau2.chr4 19322896 38 - 69556449 ACAGTCCCAGGAGCTGCCCTTGGTCAGACATCAGGGTG
|
|
i bosTau2.chr4 C 0 I 5
|
|
s canFam2.chr14 52858469 36 - 63938239 ATGGTCCCAGGAGGTATCTT--GTTGAGCATTGGGGTG
|
|
i canFam2.chr14 C 0 I 5
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_102887 10613 0 - 10616 I
|
|
e loxAfr1.scaffold_2979 27407 1631 - 113413 I
|
|
e rn3.chr4 56192657 974 + 187371129 I
|
|
e mm7.chr6 28998771 950 + 149646834 I
|
|
e panTro1.chr6 129898574 109 + 161576975 I
|
|
|
|
a score=28081.000000
|
|
s hg17.chr7 127484446 61 + 158628139 TGATTTGG-----------GCTTTTCCTTAAATCCTTGAGGAGCTGGAGGGGT-G--GGTGGCTCGCACTCCTGC
|
|
s panTro1.chr6 129898683 61 + 161576975 TGATTTGG-----------GCTTTTCCTTAAATCCTTGAGGAGCTGGAGGGGT-G--GGTGGCTCGCACTCCTGC
|
|
i panTro1.chr6 I 109 C 0
|
|
s rheMac2.chr3 165801539 61 + 196418989 TGATTTGG-----------GCTTTTCCTTAAATCTTTGAGGGGCTGGAGGGGT-G--GGTGGCTTGCACTCCTGC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s oryCun1.scaffold_194876 7839 48 - 8791 --ATTTG---------------------TAA---TTGGAGAAGCAGGTGGGGC-GCAGGAAGCCCACCAGCCTGG
|
|
i oryCun1.scaffold_194876 C 0 C 0
|
|
s bosTau2.chr4 19322939 73 - 69556449 TAACTTGGACTTTTCTCCAGGTTTCCCTTAAAGCCTGGAGAAACTGgtggggtgg--ggtagaaagtgttccagc
|
|
i bosTau2.chr4 I 5 I 1
|
|
s canFam2.chr14 52858510 60 - 63938239 TAATTTGG-----------GGCTCTCCCTAGAGGCTGGAGAAACT-GTAGGGT-G--GGTAGAAAGCACCCCAGC
|
|
i canFam2.chr14 I 5 I 1
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_102887 10613 0 - 10616 I
|
|
e loxAfr1.scaffold_2979 27407 1631 - 113413 I
|
|
e rn3.chr4 56192657 974 + 187371129 I
|
|
e mm7.chr6 28998771 950 + 149646834 I
|
|
|
|
a score=4365.000000
|
|
s hg17.chr7 127484507 31 + 158628139 TTTctggatct---------------gaatcctgactctgtcatgg
|
|
s panTro1.chr6 129898744 31 + 161576975 TTTctggatct---------------gaatcctgactctgtcatgg
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165801600 31 + 196418989 TCTctggatct---------------gaatcctgactctgacatgg
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56193631 30 + 187371129 TTGCTGGATTT---------------CAGT-CTGTCCCGCACACAG
|
|
i rn3.chr4 I 974 I 15
|
|
s oryCun1.scaffold_194876 7887 24 - 8791 ---CTG---CC---------------CAGG-AGGCCCCGAGTCCAG
|
|
i oryCun1.scaffold_194876 C 0 I 18
|
|
s bosTau2.chr4 19323013 46 - 69556449 tttctgggtgtggcacctttggctatgaatcctagctttgcagctt
|
|
i bosTau2.chr4 I 1 C 0
|
|
s canFam2.chr14 52858571 35 - 63938239 TTTctgggttaagca-----------gaagcctgactctgccactt
|
|
i canFam2.chr14 I 1 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_102887 10613 0 - 10616 I
|
|
e loxAfr1.scaffold_2979 27407 1631 - 113413 I
|
|
e mm7.chr6 28998771 950 + 149646834 I
|
|
|
|
a score=94680.000000
|
|
s hg17.chr7 127484538 76 + 158628139 acctgtt-tgactttgggcaagttgactcctattcctgagccccatatt-tttctcttctgtgaaattcagattaaaa
|
|
s canFam2.chr14 52858606 70 - 63938239 gcttgtt-tga------gcaagttaacacattttcttgaccctcctttt-ccccctttttataaatTTCAGATTAAAA
|
|
i canFam2.chr14 C 0 I 194
|
|
s bosTau2.chr4 19323059 75 - 69556449 acttgtt-tgactttggacaagtccgcatgttttcttgggtttcacatt-tcccc-attgataaaatCCAGATTTTAA
|
|
i bosTau2.chr4 C 0 C 0
|
|
s oryCun1.scaffold_194876 7929 76 - 8791 GGCTGTC-TGCCACTGGGGAGACTGATTCGGCTTCCTGAGCCTCCTTTA-TCTCTCTTCTGTAAAACTGAAATCGAAA
|
|
i oryCun1.scaffold_194876 I 18 C 0
|
|
s mm7.chr6 28999721 78 + 149646834 accttttgtgactttggaaaagttggctcatctttctgagcctcatttgttttctcttctgtaaaattcagattaaaa
|
|
i mm7.chr6 I 950 C 0
|
|
s rn3.chr4 56193676 77 + 187371129 ATCGTTT-TGACTTTGGGAAACTCGGCTCATCTTTCTGAGCCTCATTTGTTTTCTCTTCTGTAAAATTCAGATTAAAA
|
|
i rn3.chr4 I 15 C 0
|
|
s rheMac2.chr3 165801631 76 + 196418989 acctgtt-tgactttgagcaagttgactcctcttcctgagccccatatt-tttctcttctgtaaaattcagattaaaa
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129898775 76 + 161576975 acctgtt-tgactttgggcaagttgactcctattcctgagccccatatt-tttctcttttgtaaaattcagattaaaa
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e dasNov1.scaffold_102887 10613 0 - 10616 I
|
|
e loxAfr1.scaffold_2979 27407 1631 - 113413 I
|
|
|
|
a score=55780.000000
|
|
s hg17.chr7 127484614 58 + 158628139 A-AA---CATGGC---TTTGATCAAACATTATAAATAATATATAGACAGACTGCTTGTTTTTATT
|
|
s panTro1.chr6 129898851 58 + 161576975 A-AA---CATGGC---TTTGATCAAACATTATAAATAATATATAGACAGACTGCTTGTTTTTATT
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165801707 58 + 196418989 A-AA---CATGGC---TTTGATCAAACATTATAAATAATATATAGACAGACTGCTTGTTTTTATT
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56193753 58 + 187371129 AGAG---CGTACC---TTGAAGCAAGCACGATAAATAATATATAAGCAGATTGCTCGTTTTGG-C
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 28999799 59 + 149646834 agag---cgtacc---tTTAAGCAAGCACTATAAATAATATATAAACAGACTGCTCGTTTTTTCC
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_194876 8005 57 - 8791 --TG---CTTACCGTGTTCAAACGTG-GCGACTAAAGCTCCATACGCCG--TGTTTATGTGTGTT
|
|
i oryCun1.scaffold_194876 C 0 C 0
|
|
s bosTau2.chr4 19323134 57 - 69556449 -AAACCCCATACT---TTGGATCAAGCATTATAATATAGAAATAGACTGCTTCTTTCTTTT----
|
|
i bosTau2.chr4 C 0 I 800
|
|
s canFam2.chr14 52858870 54 - 63938239 -aAG---CATACC---TTTGAGCAAGCCttataaataatatataaatagtttatttctatt----
|
|
i canFam2.chr14 I 194 C 0
|
|
s dasNov1.scaffold_196781 3524 58 - 4065 -aaa---CATACC---TTTGAACAAGGATTATAAATAATATATAAACAGATGGCTCGTTTTTATT
|
|
i dasNov1.scaffold_196781 n 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e loxAfr1.scaffold_2979 27407 1631 - 113413 I
|
|
|
|
a score=40003.000000
|
|
s hg17.chr7 127484672 30 + 158628139 GTATTGCCAGA-AATGAATCCTACTAATATT
|
|
s panTro1.chr6 129898909 30 + 161576975 GTATTGCCAGA-AATGAATCCTACTAATATT
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165801765 30 + 196418989 GTATTGCCAGA-AATGAAACCTACTAATATT
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56193811 31 + 187371129 GTACTGTCACAGGGTGAATTACATTAATACT
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 28999858 31 + 149646834 GTACTGTCAGCGGGTGAGTTATACTAATATT
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_194876 8062 31 - 8791 ACATGGCCAGAAAATGCATCAAACGGATGTT
|
|
i oryCun1.scaffold_194876 C 0 C 0
|
|
s canFam2.chr14 52858924 31 - 63938239 atattGCCAGAATATGAATTATACTAATATT
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_196781 3582 31 - 4065 ATATTGCCAGAAAATGAATTATACCAACATT
|
|
i dasNov1.scaffold_196781 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e loxAfr1.scaffold_2979 27407 1631 - 113413 I
|
|
e bosTau2.chr4 19323191 800 - 69556449 I
|
|
|
|
a score=176176.000000
|
|
s hg17.chr7 127484702 101 + 158628139 GCCATCTATGGACAGAAAATGTATTACCTGTCTTC--ATCAAGACCCAGACGAGGAAGAACACGAAAAGCGGAGATTAATTTT---ACTGCCATCTCCAGAACCGT
|
|
s dasNov1.scaffold_196781 3613 106 - 4065 GCCACCTACGGACAGAAAATATATTACCTGTTTTTTTATCAAGAGTCAGATAAGGAAGAACACAAAAGGCAGAGATGAATTTTTTTTTTACCATCTCCAGAGGCTT
|
|
i dasNov1.scaffold_196781 C 0 C 0
|
|
s canFam2.chr14 52858955 101 - 63938239 GCCACCTGTGGACAGAAAATGTATCATCTGTTTTT--ATTAAGACCCAGATGAGACAAAACATAAAAAGCAGAGATTAACCCT---TTTGCCTTCTCCAGAACCTT
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19323991 102 - 69556449 GCCACCTATGGACAGAAAATGCATTACCTGTTTTT-AATCAAGACCCAGATGAAACAGAACACAAAAAGCAGAGATGAACTTC---TCCGCCATCTCCAAAACCTT
|
|
i bosTau2.chr4 I 800 C 0
|
|
s oryCun1.scaffold_194876 8093 98 - 8791 GCCATCTATGGATGGAAAATGTAGCACCTGCTGCC--TCC-AGGTCCAGAGGCGGGAGACCATGGAAAGCCGGGACGAGCTTT-----CGCCATCTCCGGCTCCTC
|
|
i oryCun1.scaffold_194876 C 0 C 0
|
|
s mm7.chr6 28999889 101 + 149646834 ACCACCGATGGAGGACAGCTATGTTACCTGTTCCC--ACCAATACCCAGATGAGGAAGAACAGAAAAAGGAGAAGTTAGCTTT---TCTGCCATCTCCATAATCTT
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56193842 94 + 187371129 ACCACTGATGGAGGACAGCCGTGTTACCTGTTCCC--ACCAAGACCCAGATGAGGAAGAACAGAA-----AGAAGTTAGTTTT---TCTGCTGTCTCCCC--TCTT
|
|
i rn3.chr4 C 0 C 0
|
|
s rheMac2.chr3 165801795 101 + 196418989 GCCATCTATGGACAGAAAATGTATTACCTGTTTTC--ATCAAGACCCAGACGATGAAGAACATGAAAAGCGGAGATTAACTTT---ACTACCCTCTCCAGAACCTT
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129898939 101 + 161576975 GCCATCTATGGACAGAAAATATATTACCTGTCTTC--ATCAAGACCCAGACGAGGAAGAACACGAAAAGCGGAGATTAATTTT---ACTGCCATCTCCAGAACCTT
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_20104 4125 503 + 4160 I
|
|
e loxAfr1.scaffold_2979 27407 1631 - 113413 I
|
|
|
|
a score=371409.000000
|
|
s hg17.chr7 127484803 224 + 158628139 CATCCTAATATTTACTTACATTTTATTATTATTTCAGGCTCATGCACATATACTTAGCATGGATCATTGGCCACAGACTCGCATACATTTAACTTTATTACCTTT-TGCCTCATGTATCTCATTAAAATTTTGCTGCTTAATCAAGGATCTGCATATTATTTTAATTTTAGAATTCACAGTTCCAAGACTTTGAAAG--TTTCAAG---CGTTCTGGGTGaatgtg---------------ttat
|
|
s panTro1.chr6 129899040 224 + 161576975 CATCCTAATATTTACTTACATTTTATTATTATTTCAGGCTCATGCACATATACTTAGCATGGATCATTGGCCACAGACTCGCATACATTTAACTTTATTACCTTT-TGCCTCATGTATCTCATTAAAACTTTGCTGCTTAATCAAGGATCTGCATATTATTTTAATTTTAGAATTCACAGTTCCAAGACTTTGAAAG--TTTCAAG---CGTTCTGGGTGaatgtg---------------ttat
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165801896 224 + 196418989 CATCCTAATATTTACTTACATTTTATTATTATTTCAGGCTCATGCACATATACTTAGCATGGATCATTGGCCACAGACTTGCATACATTTAACTTTATTACCTTT-TGCCTCATGTATCTCATTAAAACTTTGCTGCTTAATCAAGGATCTGCATATTATTTTAATTTTAGAATTCACAGTTCCAAGACTTTGGAAG--TTTCAAG---CGTTCTGGGTGaatgtg---------------ttat
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56193936 217 + 187371129 CATCCTAATATTCATGAACGTCTTTATT---ATTCAGGCTCATACGTACACCCTTAGTACGGTTCACTGGCTACAGGCTTGCATACATTTAACTTTATTACCTTTCTGCCTCATGCATCTCATCAGGCCTCTATTTCTTAATCAAGAATCTGCAGA--GTGTTAATTTAAAAACCGATGGCTCTATGAC-TGGAAA----TTCCAG---CATTCTAAGCAACCATG---------------CTAG
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 28999990 214 + 149646834 CATCCTAATATTTATGAATGTATTTATT---ATTCAAGCTCATA-GCACACCCTGAGCATGGATCACTGGCTACAGGCTTGCATACATTTAACTTTATTATCTTTCTGCCTCATGCATCTCATTAGGC--CTGTTTCTTAATCAAGAATCTGCACA--ATGTTAATTTTAAAACTTGGGGCTCCATGAC-TGGAAA----TCCCAG---CGCTCTAAGTaaacgtg---------------ctgt
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_194876 8191 196 - 8791 CGTCCCCTTATTTGCTAGCATCTTGGTTTTGTTTCAGGTTCGCG--------------------CACGGGCTGCAGACTCACGCGCACTCAGTTTGATTGCCTT--TGCCTCGCGTGTCTCATTAAGACTTTGCTGCCCCAGCAAGGAACTGCACA--TTTTTACTTTTGTGATTCGCGCCTCCTTGGCTTTGACA----ATTTAA---CGCGCCGGGTGCACGTG------------------T
|
|
i oryCun1.scaffold_194876 C 0 C 0
|
|
s bosTau2.chr4 19324093 233 - 69556449 CATGTTAATACTTAA-CACCCATAATCATTCTTTCAGGCTCATCCACACATACTTAGCATGGATCATTGGC--CAGACTTGCAGGCATTTAACCTGATTACCTTT-TGCCTCATGTATCTCATTAAAACTTCACAGCTTAATCAAGGACCTGCATA--TTATGAATGTTAGAATTCACGGTTCCATGACTTTG-GAG--TTTCAGA---CATCCTGAGTGAACACGGTAGGCTGAGAGTGTATGT
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52859056 217 - 63938239 CATGCTAATATTTACTTACATTTGATTATCATTTCAGGCTCATGCACACAACCTTAGCATGGATCA-------CAGACTCGCATACATTTAACTTTATTACCTTT-TGTCTTATGTATCTCATTAAAACTTTGCTGCTTATTCAAGGATCTGCATA--TTATTAATATTAGAATTCATTGTGCCATGACTTTGAAAG--TGTCAAA---CATTCTGGATGaacacg-------------ttatat
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_196781 3719 223 - 4065 CATCCTAATATTTACTTACATTTTATTATTATTTCAGGCTCATACACACATACTTAACATGGATGATTGGCTGTAGACTTGCCTACATTTAACTTTATTACCATT-TGCCTCATGTACCTCATTAAAACTTTGCTGCTTAATCAAGAATCTGCCTA--TTATTAATTTTAGAATTCATGATTCCATGACTTGGAAGA-TTTTctgg---catcctgaatgtacacg---------------tcat
|
|
i dasNov1.scaffold_196781 C 0 C 0
|
|
s echTel1.scaffold_297491 10563 216 + 20742 CATTCCGACACTGGCTGA-GTATGATAATTATTT--------TGCTCACCTCATTCACTTGAATGGTTGGCTATAAACCAGCACTTGTTTTGCTTTATTGCCATT-TGCCTGATGTAGGCCATTAAGACTTTACCGCTCCTGCGAGGAG--GTTTG--ATTTTATTTTTAAATAAGAATAGTCTATGACTTTAAGACATTAGCAAACTCCAGTCTGAGGGGATCTG---------------GTAT
|
|
i echTel1.scaffold_297491 n 503 n 503
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e loxAfr1.scaffold_2979 27407 1631 - 113413 I
|
|
|
|
a score=105109.000000
|
|
s hg17.chr7 127485027 140 + 158628139 gctctctcccgccaccatgtctttataccccctgatttctcagccac-tatggcaaccactttctactcttagta-gccca--tatttagtc--caatccccagctcagga--gacacttctt-ccagggagccccctgtgccttccag
|
|
s panTro1.chr6 129899264 140 + 161576975 gctctctcccgccaccatgtctttataccccctgatttctcagccac-tatggcaaccactttctactcttagta-gccca--tattcagtc--caatccccagctcagga--gacacttctt-ccagggagccccctatgcgttccgg
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165802120 140 + 196418989 gctctctcccgccgccatgtctttatgccccctgatttctcagctac-tatggcaaccactttctactcttagta-gccca--tattcagtc--caatccccagctcagga--gacacttctt-ccagggagccccctgtgcgctctgg
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56194153 117 + 187371129 GTCCTCTCCTGCCTCCACGACTTTGCA-CGTCTCGGCTCTTGGCCACTTGTGGTAACTGTGTTCTACTCTCC-CA-GCCTG--TTCTTGGTC-TTCGACACCAGCCAAGGC------------------AAACCC--------ATTCTG
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29000204 125 + 149646834 gctgtctcctacctccacacctttgca-cttctgggctcttggtcactcgtggtaactctgctctactctcc-ca-acctg--gactcggtc-tttaacaacagccaaggc------------------aaaccccttctggacttctg
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_194876 8387 141 - 8791 GGTTCTTCCCACCT-CGGGCCTCGCCC-CAGCTGGCTGCTCAGCTGCCTGTGGCCACCACCGTCTGCCCTCC-CC-GACCGCTGCCCTGGCT-TTAAAGCCCAGCTCAGGT--GACACTTTTT-CCAGGGAGCCCCGTTTGCTGTCCCG
|
|
i oryCun1.scaffold_194876 C 0 C 0
|
|
s bosTau2.chr4 19324326 145 - 69556449 gctctctctggccttcaggtctttgtaccagctgctctcttggccacttatggcaaccactttgtattcttccaagacctc--ccctttgccttcaatacccagctcaggc--gacacctcttctcagggagGCCACTTTGTAATCCTG
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52859273 142 - 63938239 agtctcttctgcctccatgcctttaaaccaactgttttc-tggcctcttgtggcaaccactctccattcttacta-accca--tactgggtttttaatacccagctcaggt--gacacctctt-tcagagagccccctttgtactcctg
|
|
i canFam2.chr14 C 0 C 0
|
|
s dasNov1.scaffold_196781 3942 114 - 4065 gctct-tcatgcccccgggccttt-------------------cctc-tacagagaccaccttctgctcttacta-atccc--tactcaggctttaggtcccagcccggcatgtgcacctcct-ccagggagtcccctg----------
|
|
i dasNov1.scaffold_196781 C 0 n 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_297491 10779 503 + 20742 I
|
|
e loxAfr1.scaffold_2979 27407 1631 - 113413 I
|
|
|
|
a score=10223.000000
|
|
s hg17.chr7 127485167 22 + 158628139 tagtatcttgtacct--------g----cccttt
|
|
s panTro1.chr6 129899404 22 + 161576975 tggtatcttgtacct--------g----cccttt
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165802260 22 + 196418989 tggtatctcgtacct--------g----cccttt
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56194270 26 + 187371129 TGATATCAAACACTT--------GTCCCCTCCCC
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29000329 21 + 149646834 tgatatcttacactt--------g-----tcccc
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_194876 8528 8 - 8791 TGATAACT--------------------------
|
|
i oryCun1.scaffold_194876 C 0 n 0
|
|
s bosTau2.chr4 19324471 30 - 69556449 CAATATCTTGTCCTTCTTGCAGAG----CTCTTT
|
|
i bosTau2.chr4 C 0 I 111
|
|
s canFam2.chr14 52859415 22 - 63938239 tgacatcttgcactt--------g----ttcttc
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 29038 22 - 113413 TGATATCTCATACTT--------G----TAATTC
|
|
i loxAfr1.scaffold_2979 I 1631 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_297491 10779 503 + 20742 I
|
|
e dasNov1.scaffold_196781 4056 0 - 4065 I
|
|
|
|
a score=63714.000000
|
|
s hg17.chr7 127485189 61 + 158628139 ttgcaaagctctttcctcctggcttagaatggcccattgacctgtttgtttctcctattaa
|
|
s panTro1.chr6 129899426 60 + 161576975 ttgcaaagctctttcctcctggcttagaatggcc-attgacctgtttgtttctcctattaa
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165802282 61 + 196418989 ttgcaaagctctttcctcctggcttagaatggcccattgacctgtttgcttctcctattaa
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 29000350 59 + 149646834 ttgtgaagcgccatcttcctgcattgacatagcctacttgcttgtctgtctctcctgtt--
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56194296 37 + 187371129 TTGTGGAGC----------------------GCCTACTTGCTTGTCTGTCCCTCCTGTT--
|
|
i rn3.chr4 C 0 C 0
|
|
s bosTau2.chr4 19324612 56 - 69556449 TTGCAGAGCTCTTTCCTCCTGTACTGCTACGGCCtgtttac-----tatctcccctattaa
|
|
i bosTau2.chr4 I 111 C 0
|
|
s canFam2.chr14 52859437 61 - 63938239 ttgtgaagtttattcttcctgtattggaatggtctgcttacctgtttatctctcttattaa
|
|
i canFam2.chr14 C 0 I 195
|
|
s loxAfr1.scaffold_2979 29060 57 - 113413 TAGTAAAGCTCTCTCTTCCTGTATTGGAATTGTCCGTTGAC----TTGTCTCTCCTATTAA
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_297491 10779 503 + 20742 I
|
|
e dasNov1.scaffold_196781 4056 0 - 4065 I
|
|
e oryCun1.scaffold_194876 8536 0 - 8791 I
|
|
|
|
a score=51195.000000
|
|
s hg17.chr7 127485250 93 + 158628139 actgtaagccactcgagggt-agagagcatctgttgttcaccattgcatcctcggtgctgagcactgcgtctgac------------------------------atattatttagaaggtcag
|
|
s panTro1.chr6 129899486 93 + 161576975 actttaagccactcgagggt-agagagcatctgttgttcaccattgcatcctcggtgctgagcactgtgtctgac------------------------------atattatttagaaggtcag
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165802343 93 + 196418989 actgtaagccactcgagggt-agagagcatctgttgttcagtattgcatcctcggtgccgagcactgtgtctgac------------------------------atattatttagaaggtcag
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 29000409 67 + 149646834 accctgggcctctggagggc-aggaagtatctTCCCT---------CCTCCTTGGT-----GTACTGAATCTGAC------------------------------------------AGGTGGA
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56194333 64 + 187371129 ACCCCGAGCCGCAGGAGGGT-AGGAAGTATCTTC------------CCTCCTTGGT-----GTCCTGCGTCGGAC------------------------------------------TGGCGGA
|
|
i rn3.chr4 C 0 C 0
|
|
s bosTau2.chr4 19324668 89 - 69556449 actggaaacactttgagagtaaaaaaacatccgttgttcactgtggcatccttggtgcccagcactgcgtctg----------------------------------atta-tcagaccttctg
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52859693 92 - 63938239 agcataagcaacctgagagt-agagagcatctgttgttcacgattctatccttggtgcctggcgctgtatctgac------------------------------acatta-gcagatcttctg
|
|
i canFam2.chr14 I 195 C 0
|
|
s loxAfr1.scaffold_2979 29117 111 - 113413 ACTGTAAGCCACTT----GT-AA--------TGTTGTTCCCCATTATATTCTTGGTACCAACCACTGTATTGGAGCCCTGGTGGCATAGTGGTTAAGAGCTACAGCtgctaatcaaaaggtcag
|
|
i loxAfr1.scaffold_2979 C 0 I 150
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_297491 10779 503 + 20742 I
|
|
e dasNov1.scaffold_196781 4056 0 - 4065 I
|
|
e oryCun1.scaffold_194876 8536 0 - 8791 I
|
|
|
|
a score=119427.000000
|
|
s hg17.chr7 127485343 98 + 158628139 taagtgctagtgggatTCAG---GCTCCCAGTGGGTGGGAGAGAAAGGACGTAAGGAAGCAAGTGGTAAAGGCCCTCACAGA-GTATCAGCAGGCTGGTGTG
|
|
s panTro1.chr6 129899579 98 + 161576975 taagtgctagtgggatTCAG---GCTCCCAGTGGGTGGGAGAGAAAGGATGTAAGGAAGCAAGTGGTAAAGGCCCTCACAGA-GTATCAGCAGGCTGGTGTG
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165802436 94 + 196418989 taagtgctagtgggatTCAG---GCTCCCAGTGGGTGGGAGAGAAAGGAAGTAAGGAAGCAAGTGGTAAAGGACATCATAGA-GTATCA----GCTTCTGTG
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 29000476 94 + 149646834 TAAATGCTGTTTGGATTCAG---ATTCCCA----TGGGGAGAGGAAGGAAGTTATAAATC-AGTAATGAAGACCTCAACAGACATAGCAAGAGGCTGCTGCT
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56194397 94 + 187371129 GAAATGCTGCTAGGATTCAG---ATTCCCA----GTGGGAGAGGAAGGAAGTTATGGATC-AGTAATGAAGACCTTAACAGACATAACAAGAGGCTGCTGCG
|
|
i rn3.chr4 C 0 C 0
|
|
s bosTau2.chr4 19324757 95 - 69556449 taagtgCCCATCGGAGTCAG---GCTCCCA----ATGGGAGAGAAAGGAAGCAATAAAGCCAGTGGTAAATGCCATCACGGAGGTATCAGTGCGCTGCTGTG
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52859785 95 - 63938239 ccagtgctggctgcatTCAG---GCTCCCA----GTAGGAGAGAAAGGAAGTAATAAAACCAGTGATAAATGCCATCACAGAGGTATCGGTAGGCTGCCATG
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 29378 97 - 113413 TAAATGCTGGTTGAATTCAGATTGCTCCCA----GTGGGACAGAAAGGGAGCAATAAAGCAAGTGGTGAAAGCAGTCATGGACCTATTGGCA-GCTGCAGTG
|
|
i loxAfr1.scaffold_2979 I 150 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e echTel1.scaffold_297491 10779 503 + 20742 I
|
|
e dasNov1.scaffold_196781 4056 0 - 4065 I
|
|
e oryCun1.scaffold_194876 8536 0 - 8791 I
|
|
|
|
a score=184164.000000
|
|
s hg17.chr7 127485441 175 + 158628139 A-GGGAGAAATGCAGAGGATGGGTGAGTAGCAT--AATCGCTAATGAT-AGGGTAATGA-TAGAGCACATTTCACAACACCTTt--aagccctttcacgtgcatcagataatttgatcctcataaaagcctagagatagatatatta-cagg-gatgaaggtggagtattttgtggttatgtga
|
|
s panTro1.chr6 129899677 175 + 161576975 A-GGGAGAAATGCAGAGGATGGGTGAGTAGCAT--AATCACTAATGAT-AGGGTAATGA-TAGAGCACATTTCACAACACCTTt--aagccctttcacatgcattagataatttgatcctcataaaagcctagagatagatatatta-cagg-gatgaaggtggagtattttgtggctatgtga
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165802530 166 + 196418989 A-GAGAGAAATGCAGAGGACAGGTGAGTAGCAT--AATCGCTAACGAT-AGGGtaatga-tagagcacatttcacaacactttc--aagccctttcacatgcattatctaatttgatcctcataaaagcctagagacaggtgtatta-cagg-gatgaaggtggagtattttgta---------
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 29000570 136 + 149646834 ATGAGACTAATGGGAAGGGGGAG---GCAACCCTGGGTCCCTAATGAT-------------------------------------------CTTCTGAatgcattagctaatttgatcttcataaaagtttggggatgggtagacta-cagg-gaggaaggtagagtcttgagtggttatgtgg
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56194491 134 + 187371129 GTGAGACTAACAGGAAGGGCGAG---GCAGCCCTGGGTCCCTAATGAT-------------------------------------------CTTCCACACGCATTAGCTAATTTGATCTTCATAAAAGCTCAGAGAAGGGTAGACCA-TAGG-GAGGAAGGT--AGTTTTGAGTGGTTATGTGA
|
|
i rn3.chr4 C 0 C 0
|
|
s bosTau2.chr4 19324852 172 - 69556449 A-GAGAGTAATGAAGAGGAC-----AGTCACAT--AATCTCTAATAAT-AGGGTAGTAA-TAGAGAACCTTTCACAACTCCTTT-Aaagctctttcacgcacattatctaatttgatcctcataaaaccctggagataggtacattg-tgggggatacagggggagtttttagcggttatggga
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52859880 174 - 63938239 G-GAGAGTAATGGAGACGGCA----AGTAACAT--AATCTCTAGTAATAAGGATAGTAA-TATAGTACATTTCACAACACCTTT-Aaagctcttgcacatgcattgtctcatttgatcctcataaaagtctagagataggtatattg-caggagatgaaggtggagtttttagtggttttgtga
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 29475 169 - 113413 A-GAGAGGAATGGAGAAGCCA----AGAAACAT--AATCTTTAACAAT-AGGGTAATAATTGGGTAACTTTC----ACACCTTTTAaagctctctcacgtgcattatctaatttggtcctcataaat-ctggaagatgggtatatta-cagg-ggatgaggtggagtggttagttgttacatca
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s echTel1.scaffold_121276 148 162 - 851 A-GCGAGCAATGGAGG---CC----GGGCACGT--GGTCTCTAACGAT-AGCCTAGGAA-TGGGCGACGC-------CACCCTTGAAAGCTCATTCACATGCGTTATCGAATCTGGTCCTCATAAGA-CCAGGAGATAGGTATGTTGCCGGG-GGATGAGGGAGA-TGGTTTGCAGTTACGTGA
|
|
i echTel1.scaffold_121276 n 503 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e dasNov1.scaffold_196781 4056 0 - 4065 I
|
|
e oryCun1.scaffold_194876 8536 0 - 8791 I
|
|
|
|
a score=139163.000000
|
|
s hg17.chr7 127485616 125 + 158628139 tatgtt-taaaattatgcagtgagtaaatgactgggttcaaaccagaccttaaaagtctgttatctttccCTCG-AGCATGCAATGAAGTCTACATCATCCCTACCATG----TCCATTTGATCACACCCT
|
|
s echTel1.scaffold_121276 310 117 - 851 AACACC-TAAATCCGGGCAGCCAGGAAAGGGCTGGAATCAGACCAGGTCTCAGTAACCTCTTCTCTTTTGCTTGAACCACACCATCAAGTCCACCCAGCCACCGTGGCG----TGCACCTGA---------
|
|
i echTel1.scaffold_121276 C 0 C 0
|
|
s loxAfr1.scaffold_2979 29644 125 - 113413 tacact-taaaaccacacagctaaaaaatgactggattcagaccagaccttaaaagcctcttctctttaccttgagccatgcAATCAAGTCCACATCGTCACCACAGCT----TCCACCTGATCGCGCCC-
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s canFam2.chr14 52860054 115 - 63938239 tctgtt-taaagtcaggcagctattaaatggctggattcagaccagaccttaaaagcc---catctcttcctcacagcTTGCAATAAAGTCA-------TACCACGACA----TCCATTCACTCATGCAC-
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19325024 79 - 69556449 tatgcc-tgcagtcgtacagctattaaatgtctggattcaaaccagaccttgaaagcc----------------------------------------------cgccg----tccacccgctcgtgccc-
|
|
i bosTau2.chr4 C 0 C 0
|
|
s oryCun1.scaffold_203931 81575 121 - 102346 TGTGCC-TGATGTTATGCAGT--GTGAGTGGTTAGATTCAAACCAGACCTTAACAGCT-TTTCCCTTTGCCTTGAAGCA-ACCCTGAAGTCTGTGCTGTCACCACCAAG----TGCATTTGGTCACAGTC-
|
|
i oryCun1.scaffold_203931 I 28047 C 0
|
|
s mm7.chr6 29000706 116 + 149646834 catacc-tgcagttaggcagcgagtaaatgTCTACATTCAACCTGGACCATAAGAGTTGGTTCTCTTTCCCTTGAAGTACGCAACAAAGCCC---CCGTCACCATCAAA----TCCATCTG---ACA----
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56194625 117 + 187371129 TATACCTTGCAGTTAGGCAGTGAGTAAATGACAACATTCAACCTAGACCATAAGAGTCGGTTCTCTTTCCCTTGAAATATGCAACAAGACCT---CCATCATCATCAAA----TCCATTTG---ACA----
|
|
i rn3.chr4 C 0 C 0
|
|
s rheMac2.chr3 165802696 127 + 196418989 ---aat-taaaattattcagtgagtaaatgactgggttcaaaccaggccttaaaaatctgttctttttcccttgaagcacgcAATGAAGTCTACATCATCCCTACCATGTCCATCCATTTGATCACACCCT
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129899852 125 + 161576975 tatgct-taaaattatgcagtgagtaaatgactgggttcaaaccagaccttaaaagtctgttatttttcccttg-agcatgcAATGAAGTCTACATCATCCCTACCATG----TCCATTTGATCACACCCT
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30245538 51850 - 46578359 I
|
|
e dasNov1.scaffold_196781 4056 0 - 4065 I
|
|
|
|
a score=234288.000000
|
|
s hg17.chr7 127485741 224 + 158628139 GGCCTCACAGCT--CTGTGGTCTACAGGATACCTCATGGTGGTTTTATTGACCAGACAATAA-----TCCTCTT-------------TCTAAGGGGATGCATTTCATTAATACAT-ATGTAG-----ATCATGAATTGTCTTTGACTTTGAGGGGATGGTAGC----CAGAGCAGAAAGCAAAGCTGATTTTCATCCCCGTCTGG------TAATGTGGTTGGTAATGTG-----AAGATGGGTGTATTCTGAGA--TACCGGCTCC
|
|
s panTro1.chr6 129899977 224 + 161576975 GGCCTCACAGCT--CTGTGGTCTACAGGATACTTCATGGTGGTTTTATTGACCAGACAATAA-----TCCTCTT-------------CCTAAGGGGATGCATTTCATTAATACAT-ATGTAG-----ATAATGAATTGTCTTTGACTTTGAGGGGATGGTAGC----CAGAGCAGAAAGCAAAGCTGATTTTCATCCCCGTCTGG------TAATGTGGTTGGTAATGTG-----AAGATGGGTGTATTCTGAGA--TACTGGCTCC
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165802823 225 + 196418989 GGCCTCCCAGCT--CTGTGGTCTACAGGATACCTCATGGTGGTTTTATTGACCAGACAATAA-----TCCTCTT-------------CCTAAGAGGATGTATTTCATTAATACAT-AGGTAG-----ATAATGAATTGTCTTTGACTTTGAGGGGATGGTAGC----CAGGGCAAAAAGCAAAGCTGATTTTCATTTCCATCCAG------TAATGTGGTTGGTAATGGG----TCAGATGGATGTATTCTGAGA--TACCAGCTCC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56194742 214 + 187371129 AGACTT---GCC--CCATGATCTATAGGACACATCACTGTGGTTTTATCAAACTGTC---AA-----TACTCTT-------------CCCAAGGGTGGGCATTTCATTG-------ATCTAGGTTCCATAATGAATTGTCTTTGACTTTGACAAGATGGTAGCTAGTTAGGGAAGAAAGCAAGTTTTA--TCTATCCACAGCCTA------CAGCA-GGTTGGCAGCAGCACCACTGGATGGATTTA----------TATTGGG-TC
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29000822 215 + 149646834 AGTCTG---GGT--CCATGATCTCTAGGACTCATCACTATGGTTTTATTGGACTGTC---AA-----TACTCTT-------------CCCAGGGGTACACATTTCACTA-------ATCTAGGTTCCATAATGAATTGTCTTTGACTTTGGCAAGATAGTAGCAAGTTAGGGAAGAAAGCACATTTTA--TCCGTCCACATCCTA------TAGCA-GGATGGCAGCAGGACCATTGGATGGATTCA----------TATTGGGCTC
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_203931 81696 223 - 102346 AGGCTGGCTGCT--CCGGGGCCTGCGGGACACCTCGTCATGGTTTTATGGACCGGACAAGAA-----TCTTCTT-------------CCAGAAGGGACGCATTTCATTAATAGAC-ATCTAG-----ATAAAGGCTCAGCTTTGGTGCAGAGGAGAAAGTAGC----CAGAGTACAAAGCAGATCTCA-GTTCATCCGCGCTAGG------CAGTGTGGCTGGTAGTGGG-----CAGATGGGCACAGTCTGAGC--TACTGGCCTC
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s bosTau2.chr4 19325103 221 - 69556449 tggctcactgcT--GCGTGGTCTACAGCACACCTC-CTGTGGTTTTCTTGATTCCGCCGCAC-------CTCTC-------------CCCAGGGGAGTGCCTTTCATTACTGTCATTTCTAG-----ACAATGAATTGTCTTTGA------GGAGATGATAGC----CATGGCAGACAGCAAATCTTGTTGTTATCCGCATCTGAAGACCTGGATGCGGGTGGTAACGGA----GCACGTGGGTGTTCTCGGAGA--T--CGACGAT
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52860169 218 - 63938239 TGGCTTACTGCT--CTGTGGTCTATTCCACATCACTTTGTTGTTTATTTGGTCAGGTCTTAC---------TTC-------------CCCACGGACATGCATTTCATTAATGTAA-TTCTAG-----ATAACAAATTGTCTTTGACAC---TGAGATGATTGC----TATGGCAGAAGGCAAGTCTCATTTTTATCCACATCCGA------TGATGAGGTTGGTAACAGG----ACTTATGGGTATTTTCTGAGA--TACCAGCAAC
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 29769 221 - 113413 TGGCTTACTGCT--CTGTAGTCTACAGGATACTGC-CTGTGGTTTTATTGATCAGGCCTTGC-------CTCTT-------------TCCAAGAGGAAGCATTTCATTGACATAT-TTCTAG-----ATAATGAATTGTCTTTGGCTTTGAGGAGAAGGTAGC----CAGGACAGAACGCGAATCTCGTGTTTATCCACATCCAG------TCATGTGGTTGCTGACAGA----GCACATGGGTGTGTTCTGAGA--TGCCAGCCC-
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s echTel1.scaffold_121276 427 204 - 851 ---CTCGCTGCT--TGGTGGCCTCGTGGGTGCCCA-CTG---------------GGCCCTAC-------CTC-T-------------TCTGAGAGAAAGCATTTCCCTGACATAT-GTCTGG-----ACATGGACCTGCCTTTGGCGTTGAAGAAAAGGTAGG----CAGGACAGAAGGCCGGTCTTGTGTCT-TCCACTTCCAG------TCATTTGGCTCCTGCCAGA----GCGTGTGGGGGTGCTCTGAGCATTGCTGACTCC
|
|
i echTel1.scaffold_121276 C 0 n 0
|
|
s monDom2.scaffold_22 30297388 229 - 46578359 gatcacacagctagttagtgtctaaggcagggtttgacgtcatcttcctaactagacagaggactctctctcttcactgtgccaccACCTAAGGGGATGTATTCCATTGACTTAC-TTCTTG-----GTAGTGACTTGTCTTGGACTTGACTAGAAAATCAGT----CAAGGAACAAACCCA-------------TGACATTTGG------G-----GGTTAGGGGTGGG--GTTTGCCCTGGTGCACCCTGAGT--TACGAGCACC
|
|
i monDom2.scaffold_22 I 51850 C 0
|
|
e dasNov1.scaffold_196781 4056 0 - 4065 I
|
|
|
|
a score=594240.000000
|
|
s hg17.chr7 127485965 213 + 158628139 TTGCAGTG-----TGTGGTTCCTTCTG-TTTTCAGGCCC---AAGAA---GCCCATCCTGGGAAGGAAAATGCATTGGGGAACCCTGTGCGGATTCTTGTGGCTTTGGCCCTATCTTTTCTATGTCCAAGCTGTGCCCATCCAAAAAGTCCAAGATGACACCAAAACCCTCATCAAGACAATTGTCACCAGGATCAATGACATTTCACACACGGTAAGGAGAGTA
|
|
s panTro1.chr6 129900201 213 + 161576975 TTGCAGTG-----TGTGGTTCCTTCTG-TTTTCAGGCCC---AAGAA---GCACATCCTGGGAAGGAAAATGCATTGGGGAACCCTGTGCGGATTCTTGTGGCTTTGGCCCTATCTTTTCTATGTCCAAGCTGTGCCCATCCAAAAAGTCCAAGATGACACCAAAACCCTCATCAAGACAATTGTCACCAGGATCAATGACATTTCACACACGGTAAGGAGAGTA
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165803048 213 + 196418989 TTGCAATG-----TGTGGTTCCTTCTG-TTTTCAGGCCC---AAGAA---GCACATCCTGAGAAGGAAAATGTATTGGAGAACCCTGTGGGGATTCTTGTGGCTTTGGCCCTATCTGTTCTACATCCAAGCTGTGCCCATCCAAAAAGTCCAAAGTGACACCAAAACCCTCATCAAGACAATTGTCACCAGGATCAATGACATTTCACACACGGTAAGGAGAGTC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56194956 218 + 187371129 TTGAAAA------TGGCATTCCTTCTG-TTTCTAGGTCCAAGAAGAAGAAGAAGACCCCAGCGAGGAAAATGTGCTGGAGACCCCTGTGCCGGTTCCTGTGGCTTTGGTCCTATCTGTCCTATGTTCAAGCTGTGCCTATCCACAAAGTCCAGGATGACACCAAAACCCTCATCAAGACCATTGTCACCAGGATCAATGACATTTCACACACGGTAGGGAGTCTC
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29001037 215 + 149646834 TTGAAAAG-----TGTCATTCATTCTG-TCTGTAGGTGC---AAGAAGAAGAAGATCCCAGGGAGGAAAATGTGCTGGAGACCCCTGTGTCGGTTCCTGTGGCTTTGGTCCTATCTGTCTTATGTTCAAGCAGTGCCTATCCAGAAAGTCCAGGATGACACCAAAACCCTCATCAAGACCATTGTCACCAGGATCAATGACATTTCACACACGGTA-GGAGTCTC
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_203931 81919 214 - 102346 TGTAATGGGT---GGTGGTTCCTTCTG-CCTTCAGGCCC---GAGAA----CACATCCTGGGAAGGAAAATGCGGTGTGGACCCCTCTGCCAACTCCTGTGGCTGTGGCCCTGTCTGTCCTGTGTTCCAGCTGTGCCCATGCGGAAAGTCCAGGATGACACCAAGACCCTCATCAAAACCATTGTCACCAGGATCAGTGACATCTCACACACGGTACAGAGGCTC
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s bosTau2.chr4 19325324 213 - 69556449 GTGCCACG-----TGTGGTTTCTTCTG-TTTTCAGGCCC---CAGAA---GCCCATCCCGGGAAGGAAAATGCGCTGTGGACCCCTGTATCGATTCCTGTGGCTTTGGCCCTATCTGTCTTACGTGGAGGCTGTGCCCATCTGCAAGGTCCAGGATGACACCAAAACCCTCATCAAGACAATTGTCACCAGGATCAATGACATCTCACACACGGTAGGGAGGGAC
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52860387 213 - 63938239 CTGCTATG-----CGTGGTTCCTTCTG-TTTTCAGGCCC---AAGAA---GCACAGCCGGGGAAGGAAAATGCGTTGTGGACCTCTGTGCCGATTCCTGTGGCTTTGGCCCTATCTGTCCTGTGTTGAAGCTGTGCCAATCCGAAAAGTCCAGGATGACACCAAAACCCTCATCAAGACGATTGTCGCCAGGATCAATGACATTTCACACACGGTAGGGAGGGTC
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 29990 213 - 113413 TTGCAATG-----TCTGGTTCCTTCTA-TTTTCAGGCCC---AAGAA---GCACATCCTGGGGAGGAAAATGCGGTGTGGAGCCCTGTGCCACCTCCTGTGGCTTTGGCCTTCTCTGGCCTACATTCAAGCTGTGCCCATCCGAAAAGTCCAAGATGACACCAAAACCCTCATCAAGACCATTGTCACCAGGATCAGTGACATTTCACACACGGTAGGGACAGTC
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s monDom2.scaffold_22 30297617 210 - 46578359 ---------TCAATTTGCTTCCTTCTTCTCTTCAAGACA---GGCAC---ATTCACCTGGGAAAGGAAAATGCACTGTGTAGCCTTGTGCAGCTTCTTGTGGCTTTGCCATCATCTCTACTACACCCAAGCAGTGCCCATCCGGAAAGTCCAAGATGACACAAAAACCCTCACCAAGACTATCATCACCAGGATCAATGACATCTCACACATGGTAGGAGAAATA
|
|
i monDom2.scaffold_22 C 0 I 4830
|
|
e echTel1.scaffold_121276 631 0 - 851 I
|
|
e dasNov1.scaffold_196781 4056 0 - 4065 I
|
|
|
|
a score=9345.000000
|
|
s hg17.chr7 127486178 31 + 158628139 T-GCGGGG-----------A--CAA------AGTAGAACTGCAGCCAGCCC
|
|
s panTro1.chr6 129900414 31 + 161576975 T-GCGGGG-----------A--CAA------AGTAGAACTGCAGCCAGCCC
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165803261 31 + 196418989 T-GTGGGG-----------A--CAA------AGTGGAACTGCAGCCAGCCT
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56195174 37 + 187371129 TTGTGGGG-----------AAGCAAAGGAGAAGTAGGGCTAGAACCAG---
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29001252 32 + 149646834 ATGGGGGG-----------A--CAA---AGATGTAGGACTAGAACCAG---
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_203931 82133 26 - 102346 C---GGGG-----------A--CCA------AGCAGGACCGTGGCCGG---
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s bosTau2.chr4 19325537 30 - 69556449 T-GGG-AG-----------A--CGA------GGTAGAACCGTGGCCATCCC
|
|
i bosTau2.chr4 C 0 I 48
|
|
s canFam2.chr14 52860600 31 - 63938239 T-GGGAAG-----------A--CAA------AGTAGAACCAAGACCGGCCC
|
|
i canFam2.chr14 C 0 I 2
|
|
s loxAfr1.scaffold_2979 30203 41 - 113413 T-GGGGGGTCCCACGCCCAA--TGA------TCTTGAGTTACC-CCAGCCC
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30297827 4830 - 46578359 I
|
|
e echTel1.scaffold_121276 631 0 - 851 I
|
|
e dasNov1.scaffold_196781 4056 0 - 4065 I
|
|
|
|
a score=111839.000000
|
|
s hg17.chr7 127486209 264 + 158628139 AGCACTGGCTCCTAGTGGCACTGGACCCAGATAGtccaagaaacatttattgaacgcctcctgaatgccaggcacctactggaagctgagaaGGATTTGAAAGCACAGGG-CTCCACTCTTTCTGGTTGTTTCTTTTGGCCCCTCTGCCTGCTGAGATTCCAG----GGGTTAGTGGTTCTAATTCTAAACCACTC--CAAGAACATTTGATTTTGC-----------------------------------TACATGTTT------------------CCATTT-AAAAATCATAGGATT-----------TGggctgggtgtggtggcttgtac
|
|
s panTro1.chr6 129900445 264 + 161576975 AGCACTGGCTCCTAGTGGCACTGGACCCAGATAGtccaagaaacatttattgaacgcctcctgaatgccaggcacctactggaagctgagaaGGATTTGAAAGCACAGGG-CTCCACTCTTTCTGGTTGTTTCTTTTGGCCCCTCTGCCTGCTGAGATTCCAG----GGGTGAGTGGTTCTAATTCTAAACCACTC--CGAGAACATTTGATTTTGC-----------------------------------TACATGTTT------------------CCATTT-AAAAATCATAGGATT-----------TGggctgggtgtggtggcttgcac
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165803292 265 + 196418989 AGCACTGGTTCCTGGTGGGCCTGGACCCAGATAGtccaagaaacatttattgaatgcctcctgaatgccaggcacccactggaagctgagaaGGATTTGAAAGCACAGGG-CTCCACTCTTTCTGGTTGTTTCTTTTGGCCCCTCTACCTGCTGGGATTCCAT----GGGTGAGTGGTTCTAATTCTAAACCACCC--CAAGAACATTTGACTTTGC-----------------------------------TACATGTTT------------------CCATTTAAAAAATCATAGGATT-----------TGggctgggtgtggtggcttgtac
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56195211 177 + 187371129 --------------------------------AGTCTGAGAATCA--CAGTGAGCGCCTTCTGAGTGTCATGCACCCCCTAGAACCTGAG---AATTTGTAAGCCTAGGGTGTCCATTCTTCCTGGTTATGGCTCGAGACACTACTGCCTGCTGGAATT-CAG----AGCTGAGTGGCTCCAATTCTAAAC-------CTAGACTGCTCAGTTGTGC-----------------------------------TATGTGAGT---------------------------------------------------------------------------
|
|
i rn3.chr4 C 0 I 57
|
|
s mm7.chr6 29001284 240 + 149646834 --------------------------------AGTCTGAGAAACA--------------------TGTCATGCACCTCCTAGAAGCTGAG---AGTTTATAAGCCTCGAGTGTACATTATTTCTGGTCATGGCTCTTGTCACTGCTGCCTGCTGAAATA-CAG----GGCTGAGTGGTTCCATTTCTAAACCCAGCATCTAGACTGCTCAGTTGTACTGCCAGTATCGCATGATTCTAATCCTAAGCCACCTTAGGGAATTTAACTTTCTCTTATACTCCCATTA-AGAAACCATAAGGTg-----------------------------------
|
|
i mm7.chr6 C 0 I 167
|
|
s oryCun1.scaffold_203931 82159 173 - 102346 --------------------------------AG------------------AGCACCCTCCGAATGCCA-GCGCCTCCTGGCAGTTGGGGGAGGTTTAAAAGCGTGGGG---------CTCCTGTTCA-GTCTCT--------CTGCCTGCTGGGCTT-CGGCAGTGAGCGAGTGGTTCTGATGCTAACCCACTC--CAAGGACGCTGAGGTTTGC-----------------------------------CAGGTGTTT------------------CTGTGA-ACGGATCGCAGGA-------------------------------------
|
|
i oryCun1.scaffold_203931 C 0 I 37
|
|
s loxAfr1.scaffold_2979 30244 251 - 113413 AGCACTGGCTCCCAGCAGGGCTGGAACCAGATTGttcaagaaatatctattgagcacctccgaaatgccaggcacctgctgg------------------aagcACAAGG-CTCCGCTCTTTCTGGTTG-TCCTCTCAGCTGT-TTGCCTGCTGGGATT-CAG----GTGTAAGCGGTCATCATTTTAAGCCACCC--TGAAAACATTTAACTTTGC-----------------------------------CAC--GTTT------------------CCGTT--AAAAATCACACGACTCTCTGACATTATGGGCCACACGTGCTTGTTTGCAC
|
|
i loxAfr1.scaffold_2979 C 0 I 76
|
|
e monDom2.scaffold_22 30297827 4830 - 46578359 I
|
|
e echTel1.scaffold_121276 631 0 - 851 I
|
|
e dasNov1.scaffold_196781 4056 0 - 4065 I
|
|
e canFam2.chr14 52860631 2 - 63938239 I
|
|
e bosTau2.chr4 19325567 48 - 69556449 I
|
|
|
|
a score=109577.000000
|
|
s hg17.chr7 127486473 445 + 158628139 ctgtcatcccagcactttgggaggccaaagcaggaggatcattcgagcccaagagttcgagaccagcctgggcagcatagggagaccccatctctacaaaaataataaaaaatgttagctgggcatggtggtgtgtacctgtggtcccagctaggggaggctgagatggaaggatcacctgagcctgggaggttgaggctgcagtgggccctgatcatgccaccgtgctccagcctgggtgacagagtgagaccttgtctcaaaataaataaataaataaataaaAGTCATAGGATTTgatcaggcatgatgggtcacatctgtaagcccattgctttaggaggccaaggtaggaggatcagttgaggccaggagttcaagaccagcctgggcaacatggcaagacctctctctctaatttttaaaaaaataaaaaTTAAAGATA
|
|
s rheMac2.chr3 165803557 431 + 196418989 ctgtcatcccagcactttgggaggccaaagcaggaggatcacttgagtccaggagttcaagactagcctgggcagcatagggagatcccatctctacaaaaataataaaaaatattagctgggcatggtggtgtgtacctgtggtcccagctaggggaggctgagatgggaggatcacctgagcctgggaggttgaggctgcagtgggccatgattgtgccaccgcgttccagcctgggcaacagagcaagaccctatctcaaaataaataaataaataaa----aaTCTTAGGATTTGATTAggcatgatgggtcacatctgtaa-------gctttaggaggccaaggcaggaggatcagttgaggccaggggttcaagaccatcctgggcaacatggcaagacttctatctctaattttttttaaa---aaaattaaaaata
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129900709 439 + 161576975 ctgtcatcccagcactttgggaggccaaagcaggaggatcattcgagcccaagagttcgagaccagcctgggcagcatagggagaccccatctctacaaaaataataaaaaatgttagctaggcatggtggtgtgtacctgtggtcccagctaggggaggctgagatggaaggatcacctgagcctgggaggttgaggctgcagtgggccctgatcatgccaccgtgctccaacctgggtgacagagcgagaccctgtctcaaaataaataaataaataaa----aaTCATAGGATTTGATcaggcacgatgggtcacatctgtaagcccattgctttaggaggccaaggcaggaggatcagttgaggccaggagttcaagacca-cctgggcaacatggcaagacctctctctctaatttttaaaaaa-taaaaattaAAAATA
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30297827 4830 - 46578359 I
|
|
e echTel1.scaffold_121276 631 0 - 851 I
|
|
e dasNov1.scaffold_196781 4056 0 - 4065 I
|
|
e loxAfr1.scaffold_2979 30495 76 - 113413 I
|
|
e canFam2.chr14 52860631 2 - 63938239 I
|
|
e rn3.chr4 56195388 57 + 187371129 I
|
|
e mm7.chr6 29001524 167 + 149646834 I
|
|
e bosTau2.chr4 19325567 48 - 69556449 I
|
|
e oryCun1.scaffold_203931 82332 37 - 102346 I
|
|
|
|
a score=14129.000000
|
|
s hg17.chr7 127486918 56 + 158628139 AGAAAAAAATCA----TAGGAT-------TCTCATG---AGGCCTCACGTGC-TTATTTTCAACCTACCAA
|
|
s panTro1.chr6 129901148 56 + 161576975 AGAAAAAAATCA----TAGGAT-------TCTCATG---AGGCCTCATGTGC-TTATTTTCAACCTACCAA
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165803988 62 + 196418989 ag-aaaaaaTCA----TAGGATTATCTGATATCATG---AGGCCTTGGGTGC-TTATTTTCACTCTACTAA
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56195445 59 + 187371129 ATGATGAAACCA----TAAGCT-CCGTGATAGCATATGGCGGCC----ATGC-TCACATTCA--CTGCCAC
|
|
i rn3.chr4 I 57 C 0
|
|
s dasNov1.scaffold_294913 39254 63 - 39903 ----AAAAATCAATGCTAATAT-TCCGGCCGTCATG---AGGCCACACATGCTTTATTTTCACTCCACCAA
|
|
i dasNov1.scaffold_294913 M 38665 C 0
|
|
s mm7.chr6 29001691 34 + 149646834 -----------------------------TATCATA---AGGCC----ATGC-TCATTTTCCCTCTGCCAC
|
|
i mm7.chr6 I 167 C 0
|
|
e monDom2.scaffold_22 30297827 4830 - 46578359 I
|
|
e echTel1.scaffold_121276 631 0 - 851 I
|
|
e loxAfr1.scaffold_2979 30495 76 - 113413 I
|
|
e canFam2.chr14 52860631 2 - 63938239 I
|
|
e bosTau2.chr4 19325567 48 - 69556449 I
|
|
e oryCun1.scaffold_203931 82332 37 - 102346 I
|
|
|
|
a score=-7006.000000
|
|
s hg17.chr7 127486974 61 + 158628139 GGGGAAACCCAGGCCTCAGCGATTAGCTGAG----------CCACATGCAGG------CACAGCCACTG----------------------------------------TCTCTTTC
|
|
s dasNov1.scaffold_294913 39317 77 - 39903 GGGGAACCCCAGGCCTCTGAGGTTAGATGAG----------GCACATCCAAC------CCCAAGTAAGG------------------------TCCACAAACAATTCTGCCTCTTCT
|
|
i dasNov1.scaffold_294913 C 0 C 0
|
|
s oryCun1.scaffold_203931 82369 54 - 102346 ----------------CAGAGGTTAACGGAG----------GGACATATGGTGACACCCTCAGGCTTTG-------------------------------------CAACCTTTGCT
|
|
i oryCun1.scaffold_203931 I 37 C 0
|
|
s bosTau2.chr4 19325615 49 - 69556449 -----------GGCCCCAG---------------------------------------TGG---CCTGG----------ACGCCCCCCTGGCATAAAGACAG----C-TCCTCTCCT
|
|
i bosTau2.chr4 I 48 C 0
|
|
s canFam2.chr14 52860633 102 - 63938239 GGGGAAACCAGGACCTCAGATGGTAGTTGAGGCCTGTGCAGCCACATATAGGGGCCA-TGGTGGCCTTG----------ACACCTCCCCGTGGTACAAACAG----CAGCCTTttct
|
|
i canFam2.chr14 I 2 C 0
|
|
s rn3.chr4 56195504 98 + 187371129 -AGGAAGCCCAGCCCTCCATGGCTAGCTGAG-------------CATGTAAGGCTCACATCAGGCCTGGGAGAACCCACGTTCCTCCCTGAT-TCCACAGAC----CACTCTCTCCC
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29001725 98 + 149646834 -AGGAAACCCAGCCCTTGGTGGCTAGCTGAG-------------CATGTAAGGTACACATCAGACCTGGGAGAACCTGGGTTCCTCCCTGCT-TCCACAGAC----CACCCTCTCCC
|
|
i mm7.chr6 C 0 C 0
|
|
s rheMac2.chr3 165804050 61 + 196418989 GGGGAAACCCAGGCCTCAGAGATTAGCTGAG----------CCACATGCAGG------CACAGCCATTG----------------------------------------TCTCTTTC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129901204 61 + 161576975 GGGGAAACCCAGGCCTCAGAGATTAGCTGAG----------CCACATGCAGG------CACAGCCACTG----------------------------------------TCTCTTTC
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30297827 4830 - 46578359 I
|
|
e echTel1.scaffold_121276 631 0 - 851 I
|
|
e loxAfr1.scaffold_2979 30495 76 - 113413 I
|
|
|
|
a score=197304.000000
|
|
s hg17.chr7 127487035 389 + 158628139 CTTCCT------GTCCCCTCTGTCCCCACCTTCTGCGCTCGCCTTCCTCCCTGACTTCACTTCCTTGAATCTTAGTGCCTACGACCAGAGGGAGCTGTGAAGTTCCTTG----TGTCCCATTGGCAGGA-ACAAGACCCCCAGAAGCATCTCCTCAGGGCCTC-------------TATCCCATCTC-TAGATGTGCTTGTCATTAGG--Gttctt-gtagttc--c---agctgatctctggcc------------------------------ctgccgctcaaagatacccaaaagagc-gagtctaccctttttcacattcaaccctctactgatttgcaaatagcagtcag-------tgcccaccctggtcttttctctggggtccagcaggcct--agaccttcagccattttcctgatgaGGTCTGTAtttgaaattaggaagat---------------------------------------------------------------------taagtttga
|
|
s panTro1.chr6 129901265 390 + 161576975 CTTCCT------GTCCCCTCTGTCCCCACCTTCTGCACTCGCCTTCCTCCCTGACTTCACTTCCTTGAATCTTAGTGCCTACGACCAGAGGGAGCTGTGAATTTCCTTG----TGTCCCATTGGCAGGT-GCAAGACCCCCAGAAGCATCTCCTCAGGGCCTC-------------TATCCCATCTCCTAGATGTGCTTGTCATTAGG--GTTCTT-GTAGTTC--C---AGCTGATCTCTGGCC------------------------------CTGCCGCTCAAAGATACCCAAAAGAGC-GAGTCTACCCTTTTTCACGTTCAACCCTCTACTGATTTGCAAATAGCAGTCAG-------TGCCCACCGTGGTCTTTTCTCTGGGGTCCAGCAGGCCT--AGACCTTCAGCCATTTTCCTgatgaggtctgtatttgaaattaggaagat---------------------------------------------------------------------taagtttga
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165804111 388 + 196418989 CTTCCT------CTCCCCTCTGTCCCTGCCTTCTGCGCTCGCCTTCCTCCCTGACTTCACTTCCTTGAATCTTAGTGCCTACGACTAGAGGGAGCCATGAAGTTCCTTG----CAGCCCATTGGC-TGT-GCAAGACCCCCAGCAGCATCTCCTCGGGGCCTC-------------TATCCCATCTC-TAGATGTGCTTGTCATTAGG--Gttctt-gtagttc--c---agttgatctctggcc------------------------------ccacctctagaagatacccaaaagagt-gagtctaccctttttcacattcagccctctactgatttgcaaataggagtcag-------tgcccaccctggtcttttctCTGGAGTCCAGTAGGCCT--AGACCTTCTGCCATTTTCCTGATGAGGTCTATAtttgaaattaggaagat---------------------------------------------------------------------taagtttga
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 29001823 359 + 149646834 CTTCCT------TAGCCCCCTGTTTCTGCCTCTCTCATTCTCTTTCATCCATGAAACTACTTCCTTGAAT-TTAGTACCCAGGGCATAAG-AATCCCTAAAGGTCATGG----TGTCCCATTGACACGTGACCAGCTTCCCAGCAGTGTCTCTACTGGGCAGG-------------------------AGGAGCAGTAGGTTTCTAAT--GGT-TT-TTAGCTA--C---AGCTT----CTGCCCACCGCT---------------------CACCCACTTTTCAAAGTCACACA-GAAAAC-AACCTTTCCCTCCTTTACAACCAGTCCT-TGTGTAGCTGCTGATAGTGGTCAG-------TGCCCACCATGTTC-TTCCTCCGAGGCCCAGCA-GCCT--ACATCTTCAGCCATTTCCTC----AGATGTATCT---AAGCTA--------------------------------------------------------------------------------TGTGC
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56195602 357 + 187371129 CTTCCT------TAGCCCTTTGTTTCTGTCTCTCTCTTTCTCTTTCCTCCATGAAACTACTTCCTTGAGT-CTAGTTCCCAGGGTATAAG-AATCCCTAAAGGTCATGGCATTCATTCCATTGACATATGACTGGCTTCCCAGCAGTGTCTCCACTGGGCAAG-------------------------AGGA----------TCTAAC--GGT-TT-CTAACTA--C---AGCTTCTC-CTGCCAGTTCCT---------------------GTTACTCCTTTCAAAGTCACACA-GAGAGC-AATCTTTCCCTCCTTTACAACCAATCTTCTGTGAAGTTGCTGACAGCTGTCAG-------TGCCCACCGTAGTC-TTTCTCCGAGACTCAGCA-TCCT--ACATCTTCAGTCATTTCCTC----AGAAGTATCT---AAGCGA--------------------------------------------------------------------------------TTCGT
|
|
i rn3.chr4 C 0 C 0
|
|
s canFam2.chr14 52860735 306 - 63938239 cttcct------ctctctccatctcccaccttct-ccctctccttcctctCTGA---------TGCAAGTCCTAGTGCCTAGGACCAAAGAGAGCCATAAAGGTCTTTG----TGTCCCACTGGCAGGTGACCAGACTCCTAGTTGCATCCCCTCTAGGCCTC-------------TGTCACATCTCTAGAATGTACTCATCATTGGG-CATTCTT-CC-------T---AGATGAACTCTAGCC-CCGTGA------------------AGCTTCTCCCTGTTACTGTTAGCC-----------------------------------------------------------------------------------------CTGGGGTCCACAG-GCCT--AGACCTTCAGCCATTTCCCAGATGACAGCTGTAtttggaattaggaagac---------------------------------------------------------------------caaatgtga
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19325664 454 - 69556449 CCTCCA------CTTCCCTTGCCTCCCGCCTTCT-CACTCTCCTCCCTCCCAGA---------CCGGAATCCTAGTGCCCAGGCCCAGAAGGAGTCACAGAGGTCCTGG----GGTCCCCTTGGCAGGTGGCCAGAACCCCAGCAGCAGTCCCTCTGGGCCTc-------------catctcatttctagaatgttttagtcgttagg-cattctt-cctgcctggt---aactgagcttagacc-ctgcga------------------gctcattactcattactgccagccc----tgc-ctgtcaagccctcttcagatacaaccctctgtgtttttgtaaatagttatcag-------tgtctcttGGGGCATTTTTTCTGAGGTCCATAA-GCTC--AGACCTGCAACCA-----CAGATGAGGTCTGTATTTAGAATGAGGGAGATGTctgtaaagtcttaagctagtcaggttccacaaggtttttaaactccagtttcctcatctagaaaatgaaagtggga
|
|
i bosTau2.chr4 C 0 C 0
|
|
s oryCun1.scaffold_203931 82423 330 - 102346 CTTCCTGCTGCACGAACCACCGCCTCTGCCTGTCCCT---TCTCCCGTCGGCTTGCCCACTTCCTTCAGTCCTGGTGCCTGGGGCTAGAGCAGCCTCCAAACCTC---------------------TGTCACCGGGATTCTCGCAG----------GGGCAGT-------------------------TGGA-------------------------CTAGCTC--TGCAAGCTTCTCTCTGCCC-TTTCG---------------------CTCCTGCATTTCAAGGCCACGTGCAAGAGC-AGGGCAACCCTGGTTC-CCATCGGCC---CATGCGGCTGCACCTGGCTTTC---------------CCTGGGCT-TTCCTCTGGGGTCCACAG-GCCT--AGCCCTTCGGCTGTTGCCTCGAGGAGGTCTGTCTGTGGAGTTAGGAAGAC---------------------------------------------------------------------TGGCTGTGA
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s dasNov1.scaffold_294913 39394 402 - 39903 CTTTCT------CTCCCCTCTGTCCCCACGGCCCTCGCT-TCCTTCTTCCCTGACTTTGTTTCCTTGAGTTATCCTGTTGAGGACCAAGG-AGGCCGTGAAGGTT-TTG----CATCCCGTGGGCAGATGACCAAG---CCAACAGCACCCCTT--GGGCTCC---------------TCCCATCTC-TGGAAGGAGCTGTCATTAGGCCATTCTTCCCAGAAT--T---AGCTGAACTCTGGCC-ATGTGGCTCGTCCCC--------CCACCACTGCCTTTCAAGGCCACGTGGTCGAGCAGGGTCTGCCGTCTTTCACAAATCACCCTCTCTACA-TAGCAAACAGCTGTTGA-------CACTCCTCTGGCTCTCTTCTCTGGGGTCAGCGG-GCCT--AGACCTGCAGCCCTTTCCCAAATGGGGTCTGCAT-TGAAACTGGGGAGAC---------------------------------------------------------------------TGCACATGA
|
|
i dasNov1.scaffold_294913 C 0 C 0
|
|
s loxAfr1.scaffold_2979 30571 430 - 113413 CCTCCT------CCCCCCTCTGTCTCCTGCCTTTTCACTCCTCTTC-TCTCTAATTTGGTTTCCTTGAATCCTAGTGGCCA-AACCAGAGGGAGCCATAAAGGTCCTA-----CTTCCCATGGGT---------GGCCCCCAGCAGCATCCTCCCTGGACCTCACCATGTACCCcccatcccgtctctagagtacacttgtcattggccgtttctc-ctagttt--t---agctgaactctggcc-ctacaaaccttttcccattactgctagtgctggcttccaaggtcacagaaaagaag-gggccta-cctctctcatctgctaccctctacgtatttgcaaacagcttttgagctctttcccctacaacggtgttttctctggggtcaacag-gccttaaaaccttcagccatttcccagataaAGTCTATATTTGGAATTAAGAAGAT---------------------------------------------------------------------TAAGCATGA
|
|
i loxAfr1.scaffold_2979 I 76 I 1803
|
|
e monDom2.scaffold_22 30297827 4830 - 46578359 I
|
|
e echTel1.scaffold_121276 631 0 - 851 I
|
|
|
|
a score=23020.000000
|
|
s hg17.chr7 127487424 69 + 158628139 a------------------------------------------------------------------------------tcttcacac-----------------------ttctgat---------------------------------------gtctgtgagatcttcagcaagttc--cttactgtct-----------------------------ttaagccttgt-tttcatc
|
|
s panTro1.chr6 129901655 69 + 161576975 a------------------------------------------------------------------------------tcttcacac-----------------------ttctgat---------------------------------------gtctgtgagatcttcagcaagttc--cttaatgtct-----------------------------ttaagccttgt-tttcatc
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165804499 69 + 196418989 a------------------------------------------------------------------------------tcttcacat-----------------------ttctgat---------------------------------------gtctaggagatcttcagcacgttc--cttaatgtct-----------------------------ttaagccttgg-tttcatc
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 29002182 74 + 149646834 A------------------------------------------------------------------------------TATCACCAT-----------------------ATctgcttccc-----------------------------------atctgcaagatcttaggccagttc-tccggtgggtt-----------------------------ttaaaccttga-ttttacc
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56195959 76 + 187371129 A------------------------------------------------------------------------------TCTCACCAC-----------------------ATCTGCTTCCC-----------------------------------ATCCGTAAGATCTTAGGCAAGTTCTTCCCGTGGTCT-----------------------------TTAAACCTTGAGTTTTACC
|
|
i rn3.chr4 C 0 C 0
|
|
s canFam2.chr14 52861041 73 - 63938239 a------------------------------------------------------------------------------tcttcacgc-----------------------ttctgttctct-----------------------------------atctgtaaaatcttaagctaattc--ctcaatgtct-----------------------------tgaagcctcag-tttccat
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19326118 236 - 69556449 aagtgttagttgctcagtcatgtccaactctttgagaccccatgaactgtagtctaccaggctcctctgtccatgaaattcttcaggcaagaatactggagtggcttgttattttcttctcccaacaagatcttcccaacccagggattgaacctgggtcttctaaattgcaggcagattc--tttaccgtctgagccaccagggaaacccataagaccttgtgaagact--a-ttaagat
|
|
i bosTau2.chr4 C 0 C 0
|
|
s oryCun1.scaffold_203931 82753 70 - 102346 G------------------------------------------------------------------------------TCTT-CCAC-----------------------ATCTGCTGTCT-----------------------------------GTCTG--AGATCTTCAGCTAGCTC--CAAAACGCCC-----------------------------TTAAGCTCTGG-CGTGGTC
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s dasNov1.scaffold_294913 39796 71 - 39903 A------------------------------------------------------------------------------TCTTCATGC-----------------------ATCTGTT--CA-----------------------------------GTCTGTGAGATCTTGAGCTCATTT--CTTAATGTCC-----------------------------TTAAGCCCCGG-TTTTGTC
|
|
i dasNov1.scaffold_294913 C 0 N 0
|
|
e monDom2.scaffold_22 30297827 4830 - 46578359 I
|
|
e echTel1.scaffold_121276 631 0 - 851 I
|
|
e loxAfr1.scaffold_2979 31001 1803 - 113413 I
|
|
|
|
a score=42091.000000
|
|
s hg17.chr7 127487493 84 + 158628139 at----ctggataatggggatatcac-acactattcacaaggttgttatgag--gcctaaattagctaaagcaATTGAATCCTCCT---TACCC
|
|
s panTro1.chr6 129901724 84 + 161576975 at----ctggataatggggatatcac-acactattcacaaggttgttatgag--gcctaaattagctaaagcaATTGAATCCTCCT---TACCC
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165804568 84 + 196418989 at----ctggataatagggatatcac-acactattcagaaggttgttatgag--acctaaattagctaaagcaggtgaaTCCTCCT---TACTC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s mm7.chr6 29002256 77 + 149646834 at----cttgataagggagacatcat-atcatatcaccaa-gttgttctaag--gcttaaatggggtGTAGTGAAAGA--CTTTCT---T----
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56196035 77 + 187371129 AT----CTTGACAATGGTAACATCAT-ATCACATCACCAA-GTTGTTCTAAG--GCTTAAACGGGCTACAGCAAAAGA--CTTCCT---T----
|
|
i rn3.chr4 C 0 C 0
|
|
s canFam2.chr14 52861114 84 - 63938239 ag----cctgatagtgggactatcataagggacttcacaagattgttaggag--at-tcagttagttaaagcaagtgaTCTCCCCT---CACCC
|
|
i canFam2.chr14 C 0 I 102
|
|
s bosTau2.chr4 19326354 91 - 69556449 agTCATCTAGACAACAAGACTATCTTAATAGTCTTCATAAGGTCTTCATGAG--AC-TAAATTAGATAAAGCAAGTGACCCTCCCTGAATACCC
|
|
i bosTau2.chr4 C 0 I 87
|
|
s oryCun1.scaffold_203931 82823 56 - 102346 AT----CTACATGATGGCG--ATCAG-ATCATCTTCCCAAGGTGGTTATCAGCCACTTACATG-------------------------------
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
e monDom2.scaffold_22 30297827 4830 - 46578359 I
|
|
e echTel1.scaffold_121276 631 0 - 851 I
|
|
e loxAfr1.scaffold_2979 31001 1803 - 113413 I
|
|
|
|
a score=178436.000000
|
|
s hg17.chr7 127487577 413 + 158628139 CCTGCATGGAGCTCTCTGGAGACTTCCACGTCTCCTGGTCATTGTGGGTGTCTTATG--GTAGTCTTGGGCAGTTAGGGAGAAGTTAGGTGTCTGGAAGCAAAGATGGCTCAGAACTAGAT-AGAGTC-TTGGGCATTTTATAGATAAAAACTCTTG----TCTC--Cttt-aaaaataat-aaaaaaaaattaGCTGGGCATATTAGCCACTCAGCAAGACTGCACGTGATAGATCCCGAGTGCCCC-ACCTTGGGTGGTGT-AATACACAATATCACGGGAGCCCCGGGTAGTAACCACGGAGGTGTCAGCCTCAGTGCTGTGGGCAG-----ATGGATGGGG-----AGAG---CCTCCC-GGAACTGGAGTCACTGGAGC----AGGGTTG-----GGGGGCCTCACT------------GAGGGTACG-----------GCCTT-------GATCTCTAAGGAGG---------AGGGACTGCC
|
|
s echTel1.scaffold_281576 330 349 + 53044 CCTGAGCAGAGCCATCTGGAGGTCTCCATGCCTCCTGGCCACTGTGTGGGCCCAACA-----------GGAAGCCTGGGAGAAGGAAGATCTCCAGAAACACAGACAGCTTAAAAGCAGAC-CGACTC-TTGGACATTTTACAGGGAGGAACCCTTAAGTCTCCTGGCTTTTAAAAGAGCC--------------------------------CATCCTGGCTACCCACTCTGGGCCCAGAGGGTGAC-ACCCT-------------------------GGAGGCCCAGG-------------------------CATCCCTGTGCACAGAGTCAGGGGAGGGAG-----AAGC--CCTCCTG-GTCAGTGCAGTTCTGGATGC----AGAGAAGGGAGGCAGGGCATTTGT------------GGGGGTACC-----------ACTTTCATCTCCAATTCCCAAGTTGC---------TGGGACTGCC
|
|
i echTel1.scaffold_281576 n 0 C 0
|
|
s canFam2.chr14 52861300 363 - 63938239 ccagcacggagcAATCTAGAGATTTCCACATCTCCTGCCCATTATGGATGTCTGACA--GTGGCCTTGGGCAGCCAGGAAGAAGTTAGGTGGCCAGAAGCAGGGACAGCTCAGAACTAGATAAGAGCC-TTGGGCATTTTA-AGAGAGAAGTCTATGAGTCTCCTTGCTTTCATG-------------------------------------------GGGCCACGCATGATAGGTCCAGAGTGTCCC-GGCTTGGGTGGTGCA---------------GAGAGT------------------------------GAGTGCCACAGGCAG----TGGAGAAGGGG-----AGAA---CTCCTG-GTAACCAGTGTTACTGGAGC----AGAGGAGTGAGATGGGACACTCTTTGGCGGGGGAGGGGGGTGGTGGAGGAGGTCCAGCCTT-------GACTCCTGAGGGGG---------TAAGAGGCCT
|
|
i canFam2.chr14 I 102 C 0
|
|
s bosTau2.chr4 19326532 352 - 69556449 CCTGCGTGGAGCAATCTGGAGACTTCCACATCTCCTGACCACTCTATATTTCTAACA--GTGGCTTTGGGAAGCCAGAGAGCAGTTAGGTAGCCAGAAGCGGGGACAGATCAGAAATAGAC-AGTGTC-T---GCATTTCCTAGAGAAAAGCCCTTAAAT-TCATTGCTTTCAAA-ACAGT----------------------------CATTCAGC-AAGCTGTACACAATAGACCCAGAGTGCCCC-AACCTGTGTGGTGCC---------------GGGATT------------------------------GATTGCTGTGGGTGG----CGGGGGAGGGG-----AGAGCCCCTCCTG-GTAACCAGGGTTACTTGAGC----AGAGCAGTGAGCTGGGGCATCGCT------------GGGGTAATG-----------GCCTG-------AATCCCTTAGGGGG---------TGAGACTTCC
|
|
i bosTau2.chr4 I 87 C 0
|
|
s oryCun1.scaffold_203931 82879 313 - 102346 ----------ACCA-CTGGCACA------------TGGTCACTGTAGATGTTTGA-A--GTGACTGT-GGGTGGCCAGGAGGTGCCAGAGGGGCAGAAGCAGGGACAGCTCAGCTCCAGAC-AGAATC-TTGGGCATTTCATAGAGAGAAACCCTTAAGTCTCCT--GCTTTCAAAACAGT--------------------------------CC------CTCCACAAGG----------CCGTCCC-AATGTAGCTGGTGACAAGA-----------CTGAGCGCCAGG------------------------CATTG---------------------AGGACTGGCAGAA--CCCCCCG-GCAGCCAGAGCCACCGGAGCCGAGGAGGGAG-----GGGGGTCCCCAT------------CAGGG-GTG-----------GCCTG-------GACCCCTAAGGAGGTGGGTGCATGAGAACCTG-
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s mm7.chr6 29002333 298 + 149646834 -----GTGGAGCCATCTGGAGACTACTATGTCTCCTGGCCAGTGTGCGTGTCTCACAGTGTGGCCTT-GGCAG-CTAGGAGAAGTCAGATATTCAGAATCAAGGACAGCTTAATATAAGAG-A----C-TTATACG--------GAGAAAGTTCTCA----TCAT--CTTTCAAAAAGAGT--------------------------------CATCAGGGCTGCACATGGAGAGGCCCAACTACCCA-AATGTGGGTGGAAATGAGA-----------GGAAGC------------------------------CAGTG---------------------GGAA-----AAGC--CCTTCCTGGTAACCAGACTCAGCAGAGT----GGGGGGG-----GGGGGCAC------------------------G-----------GCTTT-------GA-CCCTAATGAGG---------GAGAACCAC-
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56196112 294 + 187371129 -----CTGGAGCCATCTGGAGCC------ACATCCTGGCCAATGTGGATGCCTCACA--GTGGCCTT-GGCAGCCCAGGAGAGGCTCCATATTCAGGATCAAGGACAACTTAAATTAAGAC-A----T-TTGTACGTTTTGT--AGAGAAGTTCTCA----TCAT--CTTTCAAAAATAGT--------------------------------CATCAGGGCTGCACATGGAGAGACCCAACTACCCA-AATGTGGGTAGAAATGAGA-----------GGAAGC------------------------------CAGTG---------------------GGGA-----AAAC--CCTTCCC-ATAACCAGATTCAGCAGAGT------GGGGG-----AGGGGCAC------------------------A-----------ACTTT-------GA-CCCTAATGAGG---------GAGAACCAC-
|
|
i rn3.chr4 C 0 C 0
|
|
s rheMac2.chr3 165804652 411 + 196418989 CCTGCATGCAGCTCTCCGGAG------ACATCTCCTGGTCATTGTGGGTGTCTCATG--GTGGTCTTGGGCAGTTAAGGAGAAGTTAGGTGTCCAGAAGCAAAGATGGCTCAGAACTAGAT-AGAGTC-TTGGGCATTTTGTAGAGAAAAACTCTTG----TCTC--CTTTCaaaaataataaaaaaaaaattaGCTGGGCATATTAGCCACTCAGCAAGGCTGCACGTGATAGCTCCTGAGTGCCCCAACTTTGGGTGGTGTCAATACACGATATCACGGGAGCCCAGGGTAGTCACCACAGAGGTGTCAGCCTCAGTGCTGTGGGCAG-----ATGGATGGGG-----AGAG--CCCCCCC-GGAACTGGAGTCACTGGAGC----AGGGTT------GGGGACCTCACT------------GAGGGTACG-----------ACCTT-------GATCTCTAAGGAGG---------AGGGACTGCC
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129901808 414 + 161576975 CCTGCATGGAGCTTTCTGGAGACTTCCACGTCTCCTGGTCATTGTGGGTGTCTCATG--GTAGTCTTGGGCAGTTAGGGAGAAGTTAGGTGTCTGGAAGCAAAGATGGCTCAGAACTAGAT-AGAGTCATTGGGCATTTTATAGATAAAAACTCTTG----TCTC--Cttt-aaaaataat-aaaaaaaatttaGCTGGGCATATTAGCCACTCAGCAAGACTGCACGTGATAGATCCCGAGTGCCCC-ACCTTGGGTGGTGT-AATACACGATATCACGGGAGCCCCGGGTAGTAACCACGGAGGTGTCAGCCTCAGTGCTGTGGGCAG-----ATGGATGGGG-----AGAG---CCTCCT-GGAACTGGAGTCACTGGAGC----AGGGTTG-----GGGGGCCTCACT------------GAGGGTACG-----------GCCTT-------GATCTCTAAGGAGG---------AGGGACTGCC
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30297827 4830 - 46578359 I
|
|
e loxAfr1.scaffold_2979 31001 1803 - 113413 I
|
|
|
|
a score=6716.000000
|
|
s hg17.chr7 127487990 88 + 158628139 TG--------------GAAAAGCT---GAC---TG-GGAGGGAGG-----------------------ACTCGGCTGGGGGTAGAAGGGACTAG---------GGAAGGCTGG--GGGTGGGGGTGCTTATGGAGGACCTCAG
|
|
s panTro1.chr6 129902222 88 + 161576975 TG--------------GAAAAGCT---GAC---TG-GGAGGGAGG-----------------------ACTCGGCTGGGGGTAGAAGGGACTAG---------GGAAGGCTGG--GGGTGGGGGTGCTTATGGAGGACCTCAG
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165805063 88 + 196418989 TG--------------GAAAAGCT---GAC---TG-GGAGAGAGG-----------------------ACTCGGCTGGGGGTGAAAGGGACTAG---------AGAAAGCAGG--GGGTGGGGGTGCTTATGCAGGACCTCAG
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56196406 45 + 187371129 -----------------ACAAGAA---GAC---TA-GGAGGGAGA-----------------------GATCTGATGAGGGTAG--GAGGCTAG-------------------------------------------------
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29002631 48 + 149646834 -----------------AGAAGAGTATGAC---TA-GGAGGGAGA-----------------------GATCTGATAAGGGCAG--GAGGCTAG-------------------------------------------------
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_203931 83192 70 - 102346 -----------------AATGGGA---GCC---TGCAGAGGGAGG-----------------------GAGGGAATGAGGGCAGCAGCGGCTGG---------------------------GGGTGCTGACTGAGGAACCCAG
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s bosTau2.chr4 19326884 76 - 69556449 TG--------------GAGAATCT---GAC---TG-TGAGGGAGG-----------------------AGTCTGCTTGGGGTGGAAGAG---------------------TTG--GGGACGGGGAATGTACGGAAGACCTCAA
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52861663 87 - 63938239 TG--------------GAGAACCT---GAC---TG-GGAGCAAGG-----------------------AATCCTCTGGGGGCAAAAGAGGGTGA----------TGATGTCTG--GGGAAGGGGCACTTCAGGAGGACCTCAG
|
|
i canFam2.chr14 C 0 C 0
|
|
s echTel1.scaffold_281576 679 137 + 53044 TGGAGAACTGAGCAGTGAGAACCT---GACTTGTG-GGAGGGAGGGGGGTGTGCGCGCGCGGGGATGCGGTTGGCTGAGGGTGGGAAGGATGAGCAACGGGAATGACGGGTGG--GGGTGGGGAGCTTGGATAAGGTCCTTAA
|
|
i echTel1.scaffold_281576 C 0 I 138
|
|
s monDom2.scaffold_22 30302657 77 - 46578359 ---------------tgaaaa------aac---ta-aaaGGAATG-----------------------AGTTGGTAAAAAGAAAAATAGTGCAG--------------GGTGGAAGGGAGGGAGAATAGAAGGGAGAAA----
|
|
i monDom2.scaffold_22 I 4830 C 0
|
|
e loxAfr1.scaffold_2979 31001 1803 - 113413 I
|
|
|
|
a score=-1055.000000
|
|
s hg17.chr7 127488078 21 + 158628139 ATGCCTGGGG--AACAGACTCCA
|
|
s panTro1.chr6 129902310 21 + 161576975 ATGCCTGGGG--AACAGACTCCA
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165805151 21 + 196418989 ATTCCTGGGG--AACAGACTCCA
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56196451 10 + 187371129 -------------AGAAAATATA
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29002679 10 + 149646834 -------------AGAGAATATA
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_203931 83262 20 - 102346 ATGCTT-GCG--AAGAGGCTAAA
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s bosTau2.chr4 19326960 17 - 69556449 -TGCCTGGGG--AAGAAACT---
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52861750 20 - 63938239 -TGCCTGGGG--AAGAGACTTCA
|
|
i canFam2.chr14 C 0 C 0
|
|
s echTel1.scaffold_281576 954 23 + 53044 ATGCATGGGGTCACCAGGAGCCA
|
|
i echTel1.scaffold_281576 I 138 I 27
|
|
s monDom2.scaffold_22 30302740 15 - 46578359 GTACATGATA--ACCAG------
|
|
i monDom2.scaffold_22 C 0 C 0
|
|
e loxAfr1.scaffold_2979 31001 1803 - 113413 I
|
|
|
|
a score=130699.000000
|
|
s hg17.chr7 127488099 120 + 158628139 CTAAATAAAACATATGAAACCATGGCTGGTTCTTCAGCAGAGGCC-------------ATGTAGAGAA---------AGGAATGACCTAGGAAAGTTG--GCCTGGAAGTGGAGGGAAGGATGGTGTGGGAAAAG--CAGGAA--------TCT
|
|
s panTro1.chr6 129902331 120 + 161576975 CTAAATAAAACATAGGAAACCATGGCTGGTTCTTCAGCAGAGGCC-------------ATGTAGAGAA---------AGGAATGACCTAGGAAAGTTG--GCCTGGAAGTGGAGGGAAGGATGGTGTGGGAAGAG--CAGGAA--------TCT
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165805172 116 + 196418989 CTAAATAAGACACAGGAAACCACGGCTGATTCTTCAGCAGAGGCC-------------ATGCAGAGAC---------AGGAATGACCTGGGAAAGTCG------GGAAGTGGAGGGAAGGATGGTGTGGGAAGAG--CAGGAA--------TCT
|
|
i rheMac2.chr3 C 0 C 0
|
|
s rn3.chr4 56196461 95 + 187371129 -------AGGAATGGAGAGCTAT---------------GGATGTC-------------ATTTGGAGAA---------AGGAATTGCTCCACA---TTA--GTC-AGAAGCGAAGGGTGGAATGGTTCGGAATGAA--CAGAAA-------GTCT
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29002689 108 + 149646834 -------AGGAATAAAGAGCTATGGCTGGTTCTT-CACGGATATC-------------A-TTGGAGAA---------AGGAATTACTCAAGA---CTA--ATC-AGAAGTGAAGGGTGGAGTGGCTCGGAATGAA--CAGAAA-------GTCC
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_203931 83282 119 - 102346 CTCAACCAGAAACATGGAGATGCGGCTGATTCTTGCGCAGGGGCC-------------ATTTGGAGAA---------AGGAATGACCAGAGAAGGCCG--GTCTGGAAGTGGAGGAAGCAGTGGGTGGGAAGGGT--GGGCA---------TCC
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s bosTau2.chr4 19326977 126 - 69556449 -CAAGCAGGAAATAGGGAGTCATGGCTGGTTCTATAGCAGA-GTC-------------ATTTGGAAAA---------GGGAACAGCCTGCAAAGGCTG--GTCTGGAGGCAAAGGGCAGGGTGGTTTGGGAAGGG--CAGAAAGATAGGAGCCC
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52861770 127 - 63938239 CTAAGTAAG-AATCAGGCCTCATGGCTGGGTCTACAGCAGAGGCC-------------ATTTCCAGGA---------GAGAACCACCTGCGAGGATTG--GTCTGGAAGGGGAGGGCAGGGTGATTTGGGAAGAG--TAGGAGTACAGAAGTCC
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 32804 127 - 113413 CTAAATAAGAAACAGGGACTCCTGG-GGGTTCTTCAGCAGAGACC-------------ACTCAGAGAA---------GGGAAGGACTTAAGAAGGTTG--GCCTGTGAGTGAAGGGCAGGGTGGTTTGGGAAGGG--CAGGAAGACAGGAGTCT
|
|
i loxAfr1.scaffold_2979 I 1803 C 0
|
|
s echTel1.scaffold_281576 1004 122 + 53044 TGAAGTACAACACAGGGGGTCCTGA-GGGCTCTTCAGCGGAGGAC-------------TCTGGGAGAT---------GGCAGTGGCCCAGGAAGACAG--GCCTGCAGGTGGAGCG-GGAGCAGTCCGGGAAGGT--CAGGAAACCAGAG----
|
|
i echTel1.scaffold_281576 I 27 C 0
|
|
s monDom2.scaffold_22 30302755 146 - 46578359 GAAAATAGGCAATAGGGAACCATTGTTGATTCTTGAACAGGGGACTGACAAAAACAAAATTTCAGGAAGCAGTATGCAGAACGGATTAAAGAAGGCAAGAGACTGGAGGCTGAGAGACCAGTAGGGAGTGAGGAATCCAAGAAAAT--------
|
|
i monDom2.scaffold_22 C 0 I 69
|
|
|
|
a score=71742.000000
|
|
s hg17.chr7 127488219 67 + 158628139 CGGAGACCAGCTTAGAGGCTTGGCAGTCACCTGGGTGCAGG-ATACAAGGGCCTGAGCCAAAGTGGTG
|
|
s echTel1.scaffold_281576 1126 49 + 53044 -------------AGATGCTCAGCGGGCAGCTGCGGGCAGT-AGCTCAGGGTCTGGG-----AGGGCA
|
|
i echTel1.scaffold_281576 C 0 C 0
|
|
s loxAfr1.scaffold_2979 32931 61 - 113413 GTGAGGCTGGC-CAGAGGCTCAGCAGTCACCTGGGCTCAGG-AAATCAGGATCTGGG-----TTGACA
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s canFam2.chr14 52861897 66 - 63938239 AGGAAA-CAGCTTGGAAGCTTGGCAGCCCCTGGGGCACAAG-AAACAAGGGCCTGGGCCAGGGTGGTG
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19327103 66 - 69556449 AGGAGACCAGCTTGGAAACATGGTGGTCACGTGGGCACAAG-AAGTAAGGGCCCAGG-GAGGATGGTG
|
|
i bosTau2.chr4 C 0 C 0
|
|
s oryCun1.scaffold_203931 83401 50 - 102346 AGGAAGCCAG------GGGTC-CC------CTGGGCACAGG-AAGAGGGCACCTGGGCC----AGGTG
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s mm7.chr6 29002797 66 + 149646834 GGGAGACCAGCTCCGTGGCTC-CCAGTCAGCTGATGACAGG-AAGTAAGGGCCTGGACCAGGAAGGTG
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56196556 67 + 187371129 GGGAGACCAGCTCCATGGCTC-CCAGTCAGCTGACCACAGGAAAATAAGGACCTGAACCAGGAAGGTG
|
|
i rn3.chr4 C 0 C 0
|
|
s rheMac2.chr3 165805288 67 + 196418989 TGGAGACCATCTTAGAGGCTTGGCAGTCACCTGGGCACAAG-ATACAAGGGCCTGAGCCAAAGTGGTG
|
|
i rheMac2.chr3 C 0 C 0
|
|
s panTro1.chr6 129902451 67 + 161576975 CGGAGACCAGCTTAGAGGCTTGGCAGTCACCTGGGTGCAGG-ATACAAGGGCCTGAGCCAAAGTGGTG
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30302901 69 - 46578359 I
|
|
|
|
a score=1420585.000000
|
|
s hg17.chr7 127488286 553 + 158628139 AGGGAGGGTGGAAGGAGGCAGCCCAGAGAATGACC------CTCCATGCCCACGGGGAAGGCAGA---------GGG-------CTCT-------GAGAG--C-------------GATT------CCTCCCA--CATGCT-GAGCACTTGTTCTCCCTCTTCCTCCTGCATAGCAGTCAGTCTCCTCCAAACAGAAAGTCACCGGTTT-GGACTTCATTCCTGGGCTCCACCCCATCCTGACCTTATCCAAGATGGACCAG-ACACTGGCAGTCTACCAACAGATCCTCACCAGTATGCCTTCCAGAAACGTGATCCAAATATCCAACGACCTGGAGAACCTCCGGGATCTTCTTCACGTGCTGGCCTTCTCTAAGAGCTGCCACTTGCCCTGGGCCAGTGGCCTGGAGACCTTGGACAGCCTGGGGGGTGTCCTGGAAGCTTCAGGCTACTCCACAGAGGTGGTGGCCCTGAGCAGGCTGCAGGGGTCTCTGCAGGACATGCTGTGGCAGCTGGACCTCAGCCCTGGGTGCTGAGGCC-TTGAAGGTCACTCTTCCTGCAAGGACTAC-G-----TTAAGGGAAGGAACTCTGGCTTCCAGGTATCTCCAGGA
|
|
s panTro1.chr6 129902518 553 + 161576975 AGGGAGGGTGGAAGGAGGCAGCCCAGAGAATGACC------CTCCATGCCCATGGGGAAGGCAGA---------GGG-------CTCT-------GAGAG--C-------------GATT------CCTCCCA--CATGCT-GAGCACTTGTTCTCCCTCTTCCTCCTGCATAGCAGTCAGTCTCCTCCAAACAGAAGGTCACCGGTTT-GGACTTCATTCCTGGGCTCCACCCTATCCTGACCTTATCCAAGATGGACCAG-ACACTGGCAGTCTACCAACAGATCCTCACCAGTATGCCTTCCAGAAACATGATCCAAATATCCAACGACCTGGAGAACCTCCGGGACCTTCTTCACGTGCTGGCCTTCTCTAAGAGCTGCCACTTGCCCTGGGCCAGTGGCCTGGAGACCTTGGACAGCCTGGGGGGTGTCCTGGAAGCTTCAGGCTACTCCACAGAGGTGGTGGCCCTGAGCAGGCTGCAGGGGTCTCTGCAGGACATGCTGTGGCAGCTGGACCTCAGCCCTGGGTGCTGAGGCC-TTGAAGGTCACTCTTCCTGCAAGGACTAC-G-----TTAAGGGAAGGAACTCTGGCTTCCAGGTATCTCCAGGA
|
|
i panTro1.chr6 C 0 C 0
|
|
s rheMac2.chr3 165805355 551 + 196418989 AGGGAGGGTGGAAGGAGGCAGCCAAGAGAATGACC------CTCC-TGCCCAC-GGGAAGGTGGA---------AGG-------CTCT-------GAGAG--T-------------GATT------CCTCCCA--CGTGCT-GAGCACTTGTTCTCCCTCTTCCTCCCGCATAGCAGTCGGTCTCCTCCAAACAGAGGGTCACTGGTTT-GGACTTCATTCCTGGGCTCCACCCCGTCCTGACCTTATCCCAGATGGACCAG-ACACTGGCAGTCTACCAACAGATCCTCATCAATCTGCCTTCCAGAAACGTGATCCAAATATCCAACGACTTGGAGAATCTCCGGGACCTTCTTCACCTGCTGGCCTTCTCTAAGAGCTGCCATTTGCCCTTGGCCAGTGGCCTGGAGACCTTGGAGAGCCTGGGGGATGTCCTGGAAGCTTCACTCTACTCCACAGAGGTAGTGGCCCTGAGCAGGCTGCAGGGGTCTCTGCAGGACATGCTGTGGCAGCTGGACCTCAGCCCTGGGTGCTGAGGCC-TTGAAGGTCACTCTTCCTGCAAGGACTAC-A-----TTGAGGGAAGGAACTCTGGCTTCTAGGTGTCTCCAGGA
|
|
i rheMac2.chr3 C 0 I 10
|
|
s rn3.chr4 56196623 536 + 187371129 AGAA-----GGAGAGAGGCAGCTCAG---------------------GCTCACGGACATGAGGGA---------GGG-------CTCT------GGAGAG--C-------------GATT----TCCCTGCCA--TTTGCT-GAGCACCTGTTGTTCCTCTTCCTCCTGCACAGCAGTCGGTATCCGCCAGGCAGAGGGTCACCGGTTT-GGACTTCATTCCCGGGCTTCACCCCATTCTGAGTTTGTCCAAGATGGACCAG-ACCCTGGCAGTCTATCAACAGATCCTCACCAGCTTGCCTTCCCAAAACGTGCTGCAGATAGCTCATGACCTGGAGAACCTGCGAGACCTCCTCCATCTGCTGGCCTTCTCCAAGAGCTGCTCCCTGCCGCAGACCCGTGGCCTGCAGAAGCCAGAGAGCCTGGATGGCGTCCTGGAAGCCTCGCTCTACTCCACAGAGGTGGTGGCTCTGAGCAGGCTGCAGGGCTCTCTGCAGGACATTCTTCAACAGTTGGACCTTAGCCCTGAATGCTGAGGTT-TCCAAGACCACCGGGCTCCCGAGGATCAT-G-----TTGAGGGAAGAAACCTTGGCTCCCAGGTATCCTCAGGA
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29002863 537 + 149646834 AGAA-----GGAAGGAGGTAGCCCAG---------------------GTTCACAGATGTAATGAA---------GGG-------CTCT------GGAGAC--C-------------GATC----TCCCTGCCA--CTTGCTAAAGCACCTCTTGTTCTTCTTCCTCCTGCATAGCAGTCGGTATCCGCCAAGCAGAGGGTCACTGGCTT-GGACTTCATTCCTGGGCTTCACCCCATTCTGAGTTTGTCCAAGATGGACCAG-ACTCTGGCAGTCTATCAACAGGTCCTCACCAGCCTGCCTTCCCAAAATGTGCTGCAGATAGCCAATGACCTGGAGAATCTCCGAGACCTCCTCCATCTGCTGGCCTTCTCCAAGAGCTGCTCCCTGCCTCAGACCAGTGGCCTGCAGAAGCCAGAGAGCCTGGATGGCGTCCTGGAAGCCTCACTCTACTCCACAGAGGTGGTGGCTTTGAGCAGGCTGCAGGGCTCTCTGCAGGACATTCTTCAACAGTTGGATGTTAGCCCTGAATGCTGAAGTT-TCAAAGGCCACCAGGCTCCCAAGAATCAT-G-----TAGAGGGAAGAAACCTTGGCTTCCAGGGGTCTTCAGGA
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_203931 83451 553 - 102346 GTGA-----GGAGGGAGGCAG---AG---------------------GT-----GACGCGGAGAACGGGTCTGCGGG-------CTCT------GGGGAG--CAGAGAGCCTTTCAGATCCACGTCTCTCACG--CTTGCT-CAGCGCTTGTTCTGCGTCTTCTTCCCACGCAGCAGTCGGTCTCCTCCAGACAGAGGGTCGTCGGTTTGGGACTTCATCCCTGGCCTCCACCCCAACCTGAGCTTGTCACAATGGGACCAGAACGTTGGCCATCTACCAACAGATCCTCGCCAGTCTGCCGTCCCGAAATGTGATCCAAATAGCCAACGACCTGGAGAACCTCCGGGACCTTCTGCACCTGCTGGCCTCGTCCAAAAGCTGCCCCCTGCCCCGAGCCAGTGGCTTGGAGACCCTGGAGGGCCTGGGAGGCGTCCTGGAGGCGTCACTCTACTCCACGGAGGTGGTGGCCCTGAGCAGGCTGCAGGGGTTCCTGCAGGCAATGCTGCAGCAGCTGGACCTGGGCCCTGGGTGCTGAGCCC-CTGGGGGCTGCTCTTCCCCCAAGGACCAC-G-----CTGAGGAAAGAATCCT--GCTCCTAGG-GTCCGCAGGA
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s bosTau2.chr4 19327169 537 - 69556449 TGGAAGCGGGGGAGGAAGC--------------AC------CTCTACGCTCTAGGGAAAGGCGGA--GTCAGGGGAG-------CTCT------GAGGAG--C----------------T----GCCCTCTCT--CCCACT-GAGCTCTTGCTCTCCC-CTTCCTCCTGCATAGCAGTCCGTCTCCTCCAAACAGAGGGTCACTGGTTT-GGACTTCATCCCTGGGCTCCACCCTCTCCTGAGTTTGTCCAAGATGGACCAG-ACATTGGCGATCTACCAACAGATCCTCACCAGTCTGCCTTCCAGAAATGTGGTCCAAATATCCAATGACCTGGAGAACCTCCGGGACCTTCTCCACCTGCTGGCCGCCTCCAAGAGCTGCCCCTTGCCGCAGGTCAGGGCCCTGGAGAGCTTGGAGAGCTTGGGCGTTGTCCTGGAAGCTTCCCTCTACTCCACCGAGGTGGTGGCCCTGAGCCGGCTGCAGGGGTCACTACAGGACATGTTGCGGCAGCTGGACCTCAGTCCCGGGTGCTGAAGCC-TTGAAGGCCTCTCTTCC--------CAAA-G-----TCCAGGGAAGAAACCTGAGCTTCTGGCTGTCCACAGGA
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52861963 536 - 63938239 AGGAAGGAGGAGAGGAGGCAAGCAAGAGAGCGGAC------CTCCACGCTCATGGGAGAGGCCGA----------CA-------CCTT------GCAGAA--C----------------C----GACTTGT--------CT-GAGATCCTGCTCTCCCTTTTCCTCTGGCCCAGCAGTCTGTCTCCTCCAAACAGAGGGTCGCTGGTCT-GGACTTCATTCCTGGGCTCCAACCAGTCCTGAGTTTGTCCAGGATGGACCAG-ACGTTGGCCATCTACCAACAGATCCTCAACAGTCTGCATTCCAGAAATGTGGTCCAAATATCTAATGACCTGGAGAACCTCCGGGACCTTCTCCACCTGCTGGCCTCCTCCAAGAGCTGCCCCTTGCCCCGGGCCAGGGGCCTGGAGACCTTTGAGAGCCTGGGCGGCGTCCTGGAAGCCTCACTCTACTCCACAGAGGTGGTGGCTCTGAGCAGACTGCAGGCGGCCCTCCAGGACATGCTTCGGCGGCTGGACCTCAGCCCTGGGTGCTGAGACC-TCGAAGGCTTCTCTTCC--------CCAA-G-----TCGAGGAGAG-AACCTGGGCTCCCAGGTGTCTCCAGG-
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 32992 546 - 113413 AGGAAGG--GGAAGGAGGTA----------TGACC------CTCTA-CCTCGTGGGAAAGGCCCT---------AGG-------GCCC------GGCAGGATT-------------GATT----TCTCCCCTC--CTTGCT-GAGCTCTCACCCTCCCTCTTCCTTCTGCACAGCAGTCCGTCTCCTCCAAACACAGGGTCACCGGATT-GGACTTCATTCCTGGGCTCCACCCTGTCCTGAATTTGTCCAAGATGGACCAG-ACATTGGCAATCTACCAGCAGATCCTCACCAGTCTGCCTTCCAGAAATGTGATCCAAATAGCCAACGACCTGGAGAACCTCCGGGACCTTCTCCACCTGCTGGCTGCATCCAAGAGCTGCCCCTTCCCCAGGGCCAGTGGCCTGGAGACCTTGGAGAGCCTGGGTGGTGTCCTGGAGGCCTCACTCTACTCCACAGAGGTGGTGGCCCTGAGCCGGCTGCAGGGGTCTCTGCAGGACATGCTGCGGCAGCTGGACCTCAGCCCTGGGTGCTGAAACG-CAGTTGGCCTCTCTTCCCCCAAGGCCTAGCA-----TCAAGGGGAGAAGCCCCAGCTCCCATGTGTCTCCAGGA
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s echTel1.scaffold_281576 1175 524 + 53044 AGGAATG--GGCACGAGACAGCCGGGGCAGGGGCCTGCTATCTCTA-CCTCGTGGGAAAGGCCAG---------GGGTGAGGGTGTAC------GGTAGA--C-------------AGTT----TCCCCCCTC--TGTGCT-CAGTCCTCTCCCTTCCTCTCCCTCC--CACAGCAGTCCATCCACTCCAAGCCCAGGGTCACCGGCTT-GGACTTTCTCCCCGGGCCCCACCCTGTCCTGAGCCTGTCAAAGGCGGCCGAG-ACCTTGGCGATCTACCAGCAGGTCCTCACCAATCTGCCTTCCACCAGCATGATCCAAATAGCCAACGACCTGGAGAACCTCCGTGACCTGCTGTACCTGCTGGCGGCGTCCAAGAGCTGCCCTGTCCCCACGGCCAGTGGCCTGGGAAACTTGAAGATCCCCGATGGGGTCCTGGAGGCCTCGCTCTACTCCACCGAGGTGGTGGCCCTGAGCCGGCTGCAGGGCTTTCTGCAAGATACGCTGCGGCAGCTGGACCTCAGCCCCCAGTGCTGAAGCC-CCGCTG-----CCTGCCTGCATCGCTCAG-----------------------------------------AGAA
|
|
i echTel1.scaffold_281576 C 0 C 0
|
|
s monDom2.scaffold_22 30302970 519 - 46578359 -----------------------------------------------------AGGAAATGCTAA---TGATTAAAG-------CCCAGAGAGAGAAGAG--A-------------AATT----GACTCCATGACTTTGCT-TGACTC----TCTCCCTCTTCCTTTCACACAGTATTCAATCTCTGCCAAACAGAGGGTAACTGGCTT-GGATTTCATCCCGGGGCTTCATCCTTTCCAGAGTTTGTCAGACATGGACCAG-ACTTTGGCCATCTACCAGCAGATCCTCTCCAATCTGTCTTCCAGAAACATGGTACAAATATCCAACGACCTTGAAAACCTCAGGGACCTTCTCCATTTGCTGGGTTCCTTGAAGAGCTGTCCCTTTGATGAAGCTGATGGTTTGAGTTCTTTGGGGAATTTGGAAGGGGTCATGGAAGCCTCACTGTATTCCACAGAGGTTGTGACCCTGACCCGACTTCAGAAGTCCCTGTATGGCATGCTCCAACAGCTGGATCTCATCCATGGTTGCTGAAGCCAGAAAAGGTTCCTCTTCCCT---GGTTCAT-GAAAACCCTAGAGTAGGAATTTT---CTTTAGGTCTCTTAAGCA
|
|
i monDom2.scaffold_22 I 69 C 0
|
|
|
|
a score=80960.000000
|
|
s hg17.chr7 127488839 349 + 158628139 TTGAAGAGCATTGCATG------GACACCCCTTATCCAGGACT-CTGTCA--ATTTCCCTGACTCCTCTAAGCCACTCTTCCAAAG-GCATAAGACCCTAAGCCTCCTTTTGCTTGAAACCAAAGATATATACACAGGATCCTATTCTC----ACCAGGAAGGGGGTCCAC---CCAGCAAAGAGTGGG----CTGCATC----TGGGATTCCCACCAAGGTCTTCAGC---CATCAACAAGAGTTGT-CTTGTC-----CCCTCTTGA-CCCATCT---------------------------CCCCCTCACTGAATGC------------------CTCAATGTGACCAGGGGTGATTTCAGA--GAGGGCAGAGG----GGTAGGCAGAGCCTTTGGATGACCAGAACAAGGTTCCC-TCTGAGA----ATTCCAAG-
|
|
s panTro1.chr6 129903071 347 + 161576975 TTGAAGAGCATTGCATG------GACACCCCTTATCCAGGACT-CTGTCA--ATTTCCCTGAC--CTCTAAGCCACTCTTCCAAAG-GCATAAGACCCTAAGCCTCCTTTTGCTTGAAACCAAAGATATATACACAGGATCCTATTCTC----ACCAGGAAGGGGGTCCAC---CCAGCAAAGAGTGGG----CTGCATC----TGGGATTCCCACCAAGGTCTTCAGC---CATCAACAAGAGTTGT-CTTGTC-----CCCTCTTGA-CCCATCT---------------------------CCCCCTCACTGAATGC------------------TTCAATGTGACCAGGGGTGATTTCAGA--GAGGGCAGAGG----GGTAGGCAGAGCCTTTGGATGACCAGAACAAGGTTCCC-TCTGAGA----ATTCCAAG-
|
|
i panTro1.chr6 C 0 C 0
|
|
s rn3.chr4 56197159 302 + 187371129 GAAGAGAGCCATGTGTT------CACACCCGTCATCCAGGACC-CTGTCC--GTTTCTCCTACTCCTCTAGACCGCCCTTCAGAAG-GCATGGCTCTGCAAG---------GCTT--GACTAAAG--TTATCCGCACGATTCCATGAGC----ACTAGGAGGGGATTGAAGC--CTTGAAGAG----------------------GGGATTCTCACCTGGTTCTTCGGCAAATATAGATAAGAGCCGT-CCTGTC-----CCCTCCGTG-TTCCACC---------------------------TCCTCTGGGTGCGTGT------------------TTCACTGTGGCCCAGCG-GATGTGAGG--AAGG-----------GGTGGGTGGAGCCTCTGGACTGT-----------------CTCAGA----GTCTTTGG-
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29003400 304 + 149646834 GAAGAGAGCCATGTGCA------CACATCCATCATTCA---------------TTTCTCTCCCTCCTGTAGACCACCCATCCAAAG-GCATGACTCCACAAT---------GCTT--GACTCAAG--TTATCCACACAACTTCATGAGC----ACAAGGAGGGGCCAG------CCTGCAGAG----------------------GGGACTCTCACCTAGTTCTTCAGCAAGTAGAGATAAGAGCCAT-CCCATC-----CCCTCCATG-TCCCACC---------------------------TGCTCCGGGTACATGTTCCTCCGTGGGTACACGCTTCGCTGCGGCCCAGGA-GAGGTGAGG--TAGG-----------GATGGGTAGAGCCTTTGGGCTGT-----------------CTCAGA----GTCTTTGG-
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_203931 84004 316 - 102346 CAAGAGAGCCGCATGTG------GACGTCCCTT-CTCAGCACT-CTCTCCGTGTCTCTCCCACTCCTCCAA---GCCCTTCCAAAGCACAAGACTCCATCTG---------GCTTAGAACCAAAGATTGCTCTGCACA---CCAGGA---------AGGAGGGGGATGTCCCTTCCAGCAAAG----------------------AGCAGGCT----TCGGTCATCAGC----------AAGAGCCAT-GCTGtctctctctctctctc-tctctct---------------------------ctctctctctctctctctctcC-----CCCATTCTCCAGTGGGATCCAGAG-AGCTTCAGG--CTGG--------------GGGCGGAGCCTTTGGACCATCAGAGCAAAGCTCCC-CCTGGGA----ATTCTGGG-
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s bosTau2.chr4 19327706 293 - 69556449 GAAGAGAGCC-TATGTG------GGCATCCTTTATGCAGGCCAGCGGGCCATTTCTCTCTCGCTCCTCTCAGCTGCTCTTCCAAAG-GCAGAAAACTGCGAG---------GCAGGAAACCAAAGATATAAATACA-GATTCCACGCCC----ACCGGGAAGGGGGGCCCAT--CCAGCAAACACTAGA----CCGGAGC----TGGGATTTTCACAGCAGTCTT-----------------------------------CCTCCCTGT-TCCAGCT---------------------------CCCTCTCACTGCATGC------------------TTCAGCATGACCTGGGGTGATTTCA---------------------------GAGCCTTTGGACCATCA-AGCAAGATTCCC-TCTGAGA----ATCC-AGG-
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52862499 305 - 63938239 --AGAGAGAC-CGTATG------GGTGTCCTTTATCCTGGCCC-CTAGCCGTTTCTCTCTCACACCACAGAGCCACTCTTCCAAAG-GCATAAGCCTCCACG---------GCACAAAACCAAAGATAAGAATGCAGGATTCCATGCTC----ACCGGGAAGGGGGACCCAC--CTGGCAAACAGTGAC----CTGCATC----TGGGGTTCTCACAAAAGGCTT-----------------------------------CCTTCCTGT-GCCACCTC--------------------------CCCCCTCACTGCATGC------------------TTCAGCGTGACCTGGGGTGATGTCAGG---AGG-----------CACCCGCTGAGCCTTTGGACCATCA-AGCAAGGTTCTG-TCTGAGA----ATTC-TGG-
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 33538 343 - 113413 GAAGCAAGCT-TGTGTG------GACTTCCCTGATCTAGGACT-CTAGTCCATTCTCTCTCACTCCTCTAAGCTACCCTGCCAAAG-GCATAAGACTCCGAG--GTATGTTGCTTGAAACCAAAGATATATATACATGATCCCATGCTC----ACCGGGAAGGGAGGCCCAT--CCAGCAAACCATGGG----CTTTATC----TGTGCTTCTCACCAAAGTCTTCAGC---CATCAGCAGGAGTCAT-CCTGTC-----CCCTCCTCAGTCCATCTC--------------------------TCCTCTCACTGCTTGC------------------TTCAGT--GACCCAGGG-GATTGCGGGGGGCGG-----------GGGGTCCAGAGCCTCTGGGCAATTGGATGGAGGTTCCG-TTTGAGA----ATTCTGGG-
|
|
i loxAfr1.scaffold_2979 C 0 I 239
|
|
s echTel1.scaffold_281576 1699 339 + 53044 GAGGCAAGCT-GGGGCG------GTCGTGCCTGGTCTAGGGCT-CTACCCCATTCTCTGCCACTCCGCT---CAATACTGCCCATG-GCGTACGACT-CAAG--GTTTGTTGCTTGAAACCAAAGATCAATAAATACGATTCCGAGGTCACCAACCGGCAAGG--GGCCCTA--CCAGCGACCCGTGGACACTCTCTCTC----TGTGGGTCTCACC--AGTCTCCGGT---CACCTGCAGGGAGCGT-TCTGTC-----CCCTCCCCA-TCCTGCTC--------------------------ATCTCTGGCCACTCAC------------------TTTGGTGAGATCCAGGG-GCTTGCTGA----GG-----------GGGCACCAGAGCCTCGGCAGAACTGAA-GCAGGTTCCA-TTTGAGA----ACTTTTGG-
|
|
i echTel1.scaffold_281576 C 0 I 1
|
|
s monDom2.scaffold_22 30303489 385 - 46578359 -----AAACC-TATGCTTTTGACAATATCCTTTATGTAGGATT-TAAGACGATACCCTCTCACTCCTCCTAGTCATGTCATTCAAG-ACAAAATACATTATC--ATATTCAGCTGAAGACCAAAGATCTACATACATG---CCAAA-------ATTTGGCTCAAGGAGCCAT--TCAATGAACAGTGGG-----TACATCATAGTGAAATTCTTACCAAACTCTTCAGC---TGTCAACAGGGCTGATATCTATC-----CCTTCTTCA-CCTCCTTCCCAACCATTCCCTCATTTCCCTCTCAACCCCTCACTATATAT------------------T--AATGTGAGTAGTCATGACTTCAGATGATGGACATATTCATCTTTCCCCAGTAACTTCAAAGAGTCATCAGAAGGTTTCGATTTGAGGTGACACCTGTGGG
|
|
i monDom2.scaffold_22 C 0 C 0
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=192385.000000
|
|
s hg17.chr7 127489188 255 + 158628139 GAGTTCCAT--------------GAAGACCACATCCACACACG--CAGGAACTCCC--AGCAACACAAGCTGGAA---GCACAT-----GTTTAT-------TTATTCTGCATTTTATTCTGGATGGATTTGAAGCAAAGCACCAGCTTCTCCAGGCTCTTTGGGGTCAGCCAGGGCCAGGGGTCTCCCTGGAGTGCAGTTTCCAATCCCATAGATGGGTC-TGGCTGAGCTGAAC-----CC---ATTTTGAGTGACT----CGAGGGTTGGG-TTCATCTGAGCAAGAGCT--GGCAAAGGT
|
|
s panTro1.chr6 129903418 255 + 161576975 GAGTTCCAT--------------GAAGACCACATCCACACACG--CAGGAACTCCC--AGCAACACAAGCTGGAA---GCACAT-----GTTTAT-------TTATTCTGCGTTTTATTCTGGATGGATTTGAAGCAAAGCACCAGCTTCTCCAGGCTCTTTGGGGTCGGCCAGGGCCAGGGGTCTCCCTGGAGTGCAGTTTCCAATCCCATAGATGGGTC-TGGCTGAGGTGAAC-----CC---ATTTTGAGTGACT----CGAGGGTTGGG-TTCATCTGAGCAAGAGCT--GGCAAAGGT
|
|
i panTro1.chr6 C 0 C 0
|
|
s rn3.chr4 56197461 269 + 187371129 GAGCACCAT--------------GAAGGCTACATCTGCACACAGCTGGAAACTCCCAAAGCAGCACATGCTGGAAGACGCACTT-----ATTTAT-------TTATTCTGCATTTTATTTTGGATGGATTTGAAGCAAAGCATCAGCTTTTTCAGGCTTT--GGGGTCAGCTGGGGCTAGGAAGGCTCCTAGGGTGCTGTTTTCAATCCTACTGATGGGTCTTGCCCGAGGCAAAC-----CTACTTTTTTGAGTGACTGGAAGGAAGGTTGGGAATCTTCCAAACAAGAGTC--TATGCAGGT
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29003704 263 + 149646834 GAGCACCGT--------------GAAGGCTGCATCCACACACAGCTGGAAACTCCC-AAGCAGCACACGATGGAA---GCACTT-----ATTTAT-------TTATTCTGCATTCTATTTTGGATGGATCTGAAGCAAGCCATCAGCTTTTTCAGGCTTT-GGGGGTCAGCCAGGATGAGGAAGGCTCCTGGGGTGCTGCTTTCAATCCTATTGATGGGTC-TGCCCAAGGCAAAC-----CTAA-TTTTTGAGTGACTGGAAGGAAGGTTGGG-ATCTTCCAAACAAGAGTC--TATGCAGGT
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_203931 84320 258 - 102346 GAGCGGCCT--------------GAAGGCTACATCCACACGTGGCTGGAAACGCCC-AAGCAGC-CGTGGTGGGGG--GCACGT-----GTTTAT-------TTATTACGTGTTAGATTCCGAATGGACCTGAAGCCAAGAGTCAACTTTTCCGGGCTCTCTGGGGTCAGCCAGGGCTGAGCATGCTCCTGGGCTGCGGCTTCCAGTCCCGGCGAGGGGTC-TGGCCGAGGCAAAC-----CC---TTGTTCAGTGACT----TGAGGGTTGGG-GTTGACCGAGCAAGGGGC--CACCGAGGT
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s bosTau2.chr4 19327999 212 - 69556449 GAGCATCAT--------------GAAGGCTACAGC-ACATACAGCTGGATATTCCC-ACACAACATACGATGGAA---GCATTT-----ATTTAT-------TTATTATGCATTTTATTCTGAATGAATTTGAAGCAAAACACCAGCTCTTCCAGGCTCTTTGGGGTCAGCTGGGGTGAGGAA-----------CGCTCCTGGGGTGCCCATCGACAGGCC-TCACTGAGGCAAAC-----CC---ATTTTGAGTGACT-----------TGAG------------------------------
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52862804 195 - 63938239 GAGCACCAT--------------GAAAGCTACATC--CACATAGCTGCAAACTCCC-AAGCAACACA------------------------TTAT-------TTATTATGCATTTTATTCTGGATGGATTTAAAGCAAAACATCAGCCTTTCCAGGCTCTTTGGGGCCAGCCAGAGCTAGGAA-----------TGCTATTTCCAATCCCATCGGTGGGCC-TGGCTGAGGCAAAC-----CC---ATTTCTAGTGACT-----------TGAG------------------------------
|
|
i canFam2.chr14 C 0 C 0
|
|
s echTel1.scaffold_281576 2039 201 + 53044 GGGCACCCT--------------CTGGACCCTCTCTGTAC-----TGGACACTCTC-CAGCAACACAAGTTGGAA---ACACTTAAAACACATGT-------TTATGATGTATTTTATTCCGAATAAGACAAGAGCGA----------------GGTTCTCTAGGG----------------------------TGCTATTTCCAA-----------GGCC---GTGGATGCAAAC-----AC---ATGGT--GTGTCC----TGAGGGTCGGA-GTCTTCCAGACAAGCGCCAACATGGAGGT
|
|
i echTel1.scaffold_281576 I 1 C 0
|
|
s monDom2.scaffold_22 30303874 267 - 46578359 AAGCACCATTTTTAATTATTATGGAATGGTCC--CTAGAAGTAGTTGGCAACTCCT-AAGTGGCACGACTTAGAA---TCTTTT-----ATTTATTGTTGGGTTTTTTCATTTTTGTTTGTTGTTGTTGTTGTTGCTT--TGTTTACTTTTATGGTCTATCCCAGACCAACTCGGACTAAGAG-----------TGC----TTCAGGATCAGCACTACCCC-TGGAGAAGGAAACCATGGGTC---CTGTTCAGTGACT--TTGGAAGTATCAT-GGCTTCCAAACTAGACCC--AATCAAGGC
|
|
i monDom2.scaffold_22 C 0 C 0
|
|
e loxAfr1.scaffold_2979 33881 239 - 113413 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=258756.000000
|
|
s hg17.chr7 127489443 365 + 158628139 GGCTCTCCAGTTAGTTCTCTCGTAACTGG---TTTCATTTCTACTGTGACTGATGTTACATCACA------GTGTTTGCAATGGTGTTGCCCTGAGTGGATCTCCAAGGACCAGGTTATTTTA----AA---A---AGA---TTTGTTTTGT---CAAGTGTCATATGTAGGTGTCTGC-ACCCAG-GGGTGGGGA-ATGTTTGGGCAGAAG-GGAGAAGGATCTAGAATGTGTTTTCTGAATAACATTTGTGT-G-GTGGGTTCTTTGGAAGGAGT----------GAGA-TCATTTTCTTAT-CTTC---------TGCAATTGCTT---AGGATGTTTTTCATGAAAA--------------TAGCTCTTTCAG-GGGGGTTGTGAGGCC--TGGCCAGGCACCCCCTGG---A--GAGAAGTTTCTGGCCCTGGCTGA
|
|
s panTro1.chr6 129903673 364 + 161576975 GGCTCTCCAGTTAGTTCTCTCGTAACTGG---TTTCATTTCTACTGTGACTGATGTTAAATCACA------GTGTTTGCAATGGTGTTGCCCTGAGTGGATCTCCAAGCACCAGGTTATTTTA----AA---A---AGA---TTTGTTTTAT---CAAGTGTCATATGTAGGTGTCTGC-ACCCAG-GGGTGGGGA-ATGTTTGGGCAGAAG-GGAGAAGGATCTAGAATGTGTTTGCTGAATAACATTTGTGT-G-GTGGGTTCTTTGGAAGGAGT----------GAGA-TCATTTTCTTAC-CTTC---------TGCAATTGCTT---AGGATGTTTTTCATGAAAA--------------TAGCTCTTTCAG-GGGGGTTGTGAGGCC--TGGCCAGGCACCCC-TGG---A--GAGAAGTTTCTGGCCCTGGCTGA
|
|
i panTro1.chr6 C 0 C 0
|
|
s rn3.chr4 56197730 348 + 187371129 AGCTCTCAAGTTTGTCCTCTGGTGGCTGG----TTTGTTTCTGTCGTGACTGACTCTATGCAAAC------ACGTTTGCCGTGGCATTGCCTGGAG--------CGCAGGCTAGGTTATTATG----AA---AAGAAGA---TGAATTTTGT---CAAGTGTAATATGCATCTATGTGC-ACCTGA-GGGTAGGGG-ATGTGTCAGAGGGAG-AGAGAAGGATCCAGAA-GCATTCTCTGAATAACAGAGCTGT-G-GTAGACTTTTCTGAAAAGGT----------GAGG--CATTTTCTCA--CCTC---------TGCAGCCACAT---AGTGTGGCTTT-GTGAAAAG--GACAAAGGAGTTGACTCTTT-TA-GGGACATTTGAAGTA--T-ACCAGACACCCT-T---------AGAGG----------GGGCT--
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29003967 336 + 149646834 AGCGCTCAAGCTTGACCTCTGGTGACTGG---TTTTGTTTCTATTGTGACTGACTCTATGCAAAC------ACGTTTGCAGCGGCATTGCCGGGAG--------CATAGGCTAGGTTATTATC----AA---AAGCAGA---TGAATTTTGT---CAAGTGTAATATGTATCTATGTGC-ACCTGA-GGGTAGAGG-ATGTGTTAGAGGGAG-GGTGAAGGATCCGGAA-GTGTTCTCTGAATTACATATGTGT-G-GTAGGCTTTTCTGAAAGGGT----------GAGG--CATTTTCTTA--CCTC---------TGTGGCCACAT---AGTGTGGCTTT-GTGAAAAG--GACAAAGGAGTTGACTCTTT-CC-GGAACATTTGGAGTG--T-ACCAGGCACC-----------------------------------
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_203931 84578 367 - 102346 GGCTGTCGTGTTCGGTCTCTGCTAACTGG---TGTTGTGTCTACTGTGATTGGCTTCGAGTGA--------GTGTTTGCAATGGCATTGCCCCGAGTGGATCGCCAAGGGCTGGGTTATTTTT----AG---AAGCAGG---TTAATTTTGG---CAGGTGTTGTGTGTAGTTGTGTGC-ACCTGCTGGGGGTGGG-ATGTGTCGGTGGGGGAGGGGAAGGGTCTAGACTGGGTTTCCTAAGTGATGCATGTTT-G-GTGGGCTCTTTGGATGGGGT----------GAGG-TCGTTTTCTTAT-CTTC---------TGCAGCCACTT---AAGATGGTTTTCTTGAAAAT--AACAAAAGAGGCCGCTCTTTGAA-GGGACTTGTAAGGAT--T-TGCACGTGCCTT-T-G---A--GGGAGG----------GGGCTGA
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s bosTau2.chr4 19328211 347 - 69556449 GCCTCTCAAGTTTGTTCTCCAGGGACTGG---CTTTGTTTCTACTGTGACTGACTTTAAATTACA------GTGTTTGCAATGGCATTGCTCTGAATGGATCTTGAAGGACCAAGTTGTTTTA----AAAAGAAGAAGA---TGAATTTTGT---CAAGTGTAATATATCACTGGGTATAACCCGG-AGGTGGGAG-ATGTGTTGATGGGAG-CGGGGGAGATCCAGAATGTGTTTTCTGAATAACATTTGTGT-G-ATGGACTCTTTGGATGGGGT----------GAGG-TCATCTTCTCA--TCTT-------------------------TGTGGTTTTCATGA---------AGAGGAGATGACTCCTTCAG-GGGGATTGTGGGGGT--TGGCCAACCATCCA-TGG---ATGGAGTGG-----------------
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52862999 370 - 63938239 GGCTCTCAAGTTAGTTCTTTGGTAACTGG---CTATGTTTCTACTGTGACGGATGTTAAATTACA------GTGTTTGCAATGGCATTGCCCTGAGCGGATCTCCAAGGACCAGGTTATTTCA----AA---AAGAAGA---TGAATTTTGT---CATGTGTGATATATAGATGTGTGT-ACCTGG-AGGTAGGAGAACGTGTTAGCAGGAA-GGGGAAGGATCCAGGATGTATTTTTTGAATTACATTTGTGC-G-ATGGGCTCTTCGAATGGAGG----------GGGGTTCATGTTCTCA--TCTC---------TGCAACCACTT---AGTGTGGTTTTAATGAGAAT--AACAAAGGATATGACTCCTTCAGCGGGGGTTGTGGGGTT--TTGCCAGCCACCCA-TGG---GGGGGGCAG----------TGGC---
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 34120 320 - 113413 GGCACTCAAGTTAGTGT-CTCACAACTGG---CTTTGTTTCTACTGTGACTGATACCAA------------GTGTTTGTAATGGCATCGCCTCGAGCGAATCTCTAAGG-CCAGGTTATTTTA----AA---AAGGAGAACATGGACTTTGT---CAAATGTGATATGCAGCTGTGTGC-AC---A-AGGTGGAAC-AC-------------------------------GTGTTTTCTGAGT-AAGTTTGTGT-G-GTGGGCTCTTGGGATGGGGT----------GAGG-TCAGTTTCTCAT-GGTC---------TGCAGCCACATAGGAGGGTAGTTTCCAAGGAAAT--AACAAAGGAGATGACCCTTCAAA-GGGGG-TGTGGTGTT--TTGCCAGGTGTCCT-TGG---AG------------------------
|
|
i loxAfr1.scaffold_2979 I 239 C 0
|
|
s echTel1.scaffold_281576 2240 284 + 53044 GTCACTCAAGTTAGTGT---------------CTTTGTTTGTACTGGAATTGATTTCAA------------GTGTTTGCCAGGCCAGGGCCTTGGGCGGACAGCCTAGG-CTAG----TTTTC----CG---GAGGAGAAGCTGAACCTTGT-----------------AGCTGTGGGC-AT---G-GGCTGGAG--GT-------------------------------TAGTCTTCTGA---AGGTTTGTGCGG-GCCAGCTCTGGCGCTGAGGT----------GAGG-TCAGTTTCGCAT-CTTC---------TGCAGCTACGT-GAAGGGAGCTTTCTGTGGAAAT-----GGAAGAAATGACTCTCCCGA-GGGGGATGTGGGATC--TAGCT-GGTGTCCT-TGG---A-------------------------
|
|
i echTel1.scaffold_281576 C 0 C 0
|
|
s monDom2.scaffold_22 30304141 373 - 46578359 TGCCTGTAATTAACTCTTCTTCTCCCTTGGATCTTTGTTTCTACTGTGACTGACTTTAAATCAAAATTCAGGTGGCTTCTATGCCAT---CTCAAGGGGATCACCAAGGACCAAATTATTTAAGGAGAA---ACAAAGA---TGAGAATTGTTCTCAAATGGAACTTTCAGCAGTGA---AATTTT-GGGTAGGGT-AGAATAGGGTGGAAT-GGGG-------------TTTATGTTTAAGTTGCTATTGTAT-GTGTGTGTCCTTTGAATGATGTTCTAGAATAAAGGG-TCCTTTCCCCCTCCCTCCCCCTATCTTCCTACCACAT---ACCTCAGT----ATGAGCAGCCATTGTGGGGTGCAACT-----GG-TGATGCTGTGATGTCAATTTCTAGGCCCACA-TGGCTAA-------------------------
|
|
i monDom2.scaffold_22 C 0 I 2024
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=13226.000000
|
|
s hg17.chr7 127489808 24 + 158628139 CCCCAAAGAGCCTGGAGAAGCTGA
|
|
s panTro1.chr6 129904037 24 + 161576975 CCCCAAAGAGCCTGGAGAAGCTGA
|
|
i panTro1.chr6 C 0 C 0
|
|
s rn3.chr4 131173530 22 - 187371129 CCCC--AAAGCCTGAAAAAGCTGA
|
|
i rn3.chr4 n 0 C 0
|
|
s oryCun1.scaffold_203931 17890 24 + 102346 CCCCAGAGAGCCCGGAAAAGTTGA
|
|
i oryCun1.scaffold_203931 n 0 C 0
|
|
s canFam2.chr14 11075317 24 + 63938239 CCCCAAAGAGCCTGGAAAGGCTGA
|
|
i canFam2.chr14 n 0 C 0
|
|
s echTel1.scaffold_281576 2524 12 + 53044 ------------GGGTGGGGTTGG
|
|
i echTel1.scaffold_281576 C 0 C 0
|
|
s loxAfr1.scaffold_2979 34440 12 - 113413 ------------GGGCAGAGCCGA
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s bosTau2.chr4 19328558 12 - 69556449 ------------TGGGGGCACTGA
|
|
i bosTau2.chr4 C 0 C 0
|
|
s mm7.chr6 29004303 12 + 149646834 ----------CTTGGAGGGGCT--
|
|
i mm7.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30304514 2024 - 46578359 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=27577.000000
|
|
s hg17.chr7 127489832 35 + 158628139 TGCTTTGCTTCAAATCCATCCAGAATAAAACGCAA
|
|
s panTro1.chr6 129904061 35 + 161576975 TGCTTTGCTTCAAATCCATCCAGAATAAAATGCAA
|
|
i panTro1.chr6 C 0 C 0
|
|
s rn3.chr4 131173552 35 - 187371129 TGCTTTGCTTCAAATCCATCCAAAATAAAATGCAG
|
|
i rn3.chr4 C 0 n 0
|
|
s mm7.chr6 120643018 35 - 149646834 TGGCTTGCTTCAGATCCATCCAAAATAGAATGCAG
|
|
i mm7.chr6 n 0 n 0
|
|
s oryCun1.scaffold_203931 17914 33 + 102346 CTCTTGGCTTCAGGTCCATTCGGAATCTAACAC--
|
|
i oryCun1.scaffold_203931 C 0 n 0
|
|
s bosTau2.chr4 50228339 34 + 69556449 TGTTTTGCTTCAAATTCATTCAGAATAAAATGCA-
|
|
i bosTau2.chr4 n 0 n 0
|
|
s canFam2.chr14 11075341 34 + 63938239 TGTTTTGCTTTAAATCCATCCAGAATAAAATGCA-
|
|
i canFam2.chr14 C 0 n 0
|
|
s loxAfr1.scaffold_2979 34452 4 - 113413 ------------------------------AGCA-
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s echTel1.scaffold_281576 2536 4 + 53044 ------------------------------CACA-
|
|
i echTel1.scaffold_281576 C 0 C 0
|
|
e monDom2.scaffold_22 30304514 2024 - 46578359 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=191475.000000
|
|
s hg17.chr7 127489867 240 + 158628139 AGGGCTGAAAGCCATTTGTTGGGGCAGTGGTAAGCTCTGGCTTTCTCCGACTGCTAGG--------GAGTGGTCTTTCCT----------------ATCATGGAGTGACGGTCCCACACTGGTGACTGCGATCTTCAGAG--CAGGGGTCCTTGGTGTGACCCTCTGAA-TGGTCCAGGGTTGATCACACTC-TGGGTTTATT--ACATGGCAGTGTTCCTATTTGGGGCTTGCATGCCAAATTGTAGTTCTTGTCTGATTGGCTCACCC
|
|
s rn3.chr4 56198078 205 + 187371129 AAAGTTACAGGCCTTTTGTTGGCATATTGCTGAGC--------------------------------------------------------------TCAGGGAGTGAGGGCCCCACATTGGAGACAGTGAGCCCCAAGA--AAAGGGTCCCTGGTGTAGCCCTCCAAAGTTGCCCAGGGTTGATCCCACAA-TGCATTTCTTAAGCAGGCAAGTATCCCTGGTAGATGTTTGCCTGTCAATATGTGGTTCTCATCTGATTGGTTCATCC
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29004315 192 + 149646834 AAAGCTACAGGCCTTTTGTTGGCATATTGCTGAGC--------------------------------------------------------------TCAGGGAGTGAGGGCCCCACATTTGAGACAGTGAGCCCCAAGA--AAAGGGTCCCTGGTGTAGATCTCCAAGGTTGTCCAGGGTTGATCTCACAA-TGCGTTTCTTAAGCA-------------GGTAGACGTTTGCATGCCAATATGTGGTTCTCATCTGATTGGTTCATCC
|
|
i mm7.chr6 C 0 C 0
|
|
s panTro1.chr6 129904096 240 + 161576975 AGGGCTGAAAGCCATTTGTTGGGGCAGTGGTAAGCTCTGGCTTTCTCCGACTGCTAGG--------GAGTGGTCTTTCCT----------------ATCATGGAGTGACGGTCCCACACTGGTGACTGCGATCTTCAGAG--CAGGGGTCCTTGGTGTGACCCTCTGAA-TGGTCCAGGGTTGATCACACTC-TGGGTTTATT--ACATGGCAGTGTTCCTATTTGGGGCTTGCATGCCAAATTGTAGTTCTTGTCTGATTGGCTCACCC
|
|
i panTro1.chr6 C 0 C 0
|
|
s canFam2.chr14 52863369 237 - 63938239 ---ACTGACGACTGTTTACTGGGGCAGTTGTGAGCGCTGGCCTTCTCCAATTGCTGGA--------GACAGGTCTTTCTT----------------ATCAGGGAATGAGGATCCCTCACTGGAGGTGGTGATCCCCAGAG--CAGGGGTCCTTAGTATGGGCCTTGGAA-TGGTCTAGGGATGATCCCACAC-TGGATTTGTA--ACATGGAAGTACCCCTACTTGGGATTTGCATGCCAAATTGTGGTTCTCATCTGACTGGCTCACCC
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19328570 199 - 69556449 --AGCTGAAGACCGT----CGGGGTAGTGGTGAGCTCTGGCCTTCTCTGACTGTTAGA--------GAGTGGTCTTGCTC----------------ATCAGGAAGTGAGGACCCCACACTGGAGATGGTGACCCCCAGAG--CAGGGGTCCTTGGTAT--------GAA-TGGTCT-GGGTTGACCCCACAC-TGTGTTGATA--ACATGGTCGTGACCTTCTTTGGGATTTGCAT--------------------------GCTCACCC
|
|
i bosTau2.chr4 C 0 C 0
|
|
s oryCun1.scaffold_203931 84945 177 - 102346 --AGGTGGAGGCTGCTGGCTGGGGCAGCTGTGAGC--------------------------------------------------------------TCAGACAGCAAGAGTCCCACGCC----ACACC---CTCCAAAT--GAACAGTTCACAG-GTGGCCC--------CGCTCTGGGTTTACAGCATGGCCGTGTCCCTC-----------TGTCCCTATCTGGGGGTTGAGTGTCAAATTATAGTTCTTGTCTGATTGGTTCATCC
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s loxAfr1.scaffold_2979 34456 235 - 113413 -------GAGACTGTTTGTTGGGGCAGTGGTGAGCTCTGGCCTTCCCCAACTGCCAGC--AAGAGTGAGTGGTCTTTCTT----------------ATCAGGGAGTCAGGGTCCCACACTCAAAATAGTGGTCCCCAGAG--CTGGGGCCCTCAGTGTAGCCCTCTGAA-TGGTC--ATGTTAGAGCCACAC-CGGG---GTTAGACATGGCAGTGTTCCTATT-GGGATTTGCATTCCACGTTGTGGTTCTCATCTGATTGGCTCATCC
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s echTel1.scaffold_281576 2540 245 + 53044 -------CAGACTG-TGGATGAGGCAGTGGTCGGCTCTGGTCTTCTTCAACTACCAGCCAGAGAGCGAGTGTTGTTTGTTTTATTTTGATGTTTTAATCAGGGAGTGAGGGTCCCACCCCGAAGACAGTGGTCCCCAGAACTCTAGAGTCCTCAGGGTAGTCCTCAGAA-TGGCC--ATGTGAGAGCCA------------TTAGACATGGCGGTGTCCCAACT-AAGATTTGCATGCTGT-CTGTGGCTCTCCTCTGCTTGGCCCATTC
|
|
i echTel1.scaffold_281576 C 0 I 444
|
|
e monDom2.scaffold_22 30304514 2024 - 46578359 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=386491.000000
|
|
s hg17.chr7 127490107 436 + 158628139 A-AGCAAGGCCAAAATTACCAAAAA-TCTTGGGGG-GTTTTTACTC-CAGTGGTGAAGAAA---ACTC---------CTTTAGCAGG----TGGTCCTGAGACCT-GACAAGCACTGC--TAGGCGAGTGCCAGGACTCCCCAGGCCAGGCCACCAGGATGGCCCTTCCCACTGGAGGTCACATTCAGGAAGATGAAAGAGGAGGTTTGGGGTCTGCCACCATCCTGCTGCTGTGTTTTTGCTATCACACAGTGGGTGGTGGATCTGTCCAAGGAAACTTGAATCAAAGCAGTTAAC-TTTAAGactgagcacctgcttcatgctcagccctgactggtgctataggctggag--aagctcacccaataaa--cattaagat-tgaggcctgccctcagggatcttgcattcccagtggT-CAAACCGCACTCACCCATGTGCCAAGGTGGGGTATTTACCACAGC
|
|
s loxAfr1.scaffold_2979 34691 417 - 113413 AAAGCAAGGACATGTTTCCCACCCATTCTGGAAGG-A-TTTTGATC-CAGTGGGAAGGTG----ACAC---------ACATAGCGGGTCTGTGGTCTGAAGACCTGGGCCAGCGCTGC--TGGCTGAG--CCGTAA--CCCCAGGCCGGGCCACCAGGATCACAATCCCACAGCGGGGTTGGCTCCAGAGGGATGGACG--------TGAGTTTTTCCACCATCC----ACGGTGATGTTGCCATCACAT--GGGGTGGTGGACCTTTCCAAAGAAATTTGAATCAAAGCAATAAAC-TTT--GACTGGGCACCTCCAGTGTGCTCAGCCCTAACTGGTGCTATGGGCGAGAG--AAGCTCACAATATATAGCCCCGATGAG-CCAGTCCTGCCCTCAGGGACCT-GCACTGTACACGGT--AAACCCACTTCACGGGTCTGCAAATGCTGGCA----ACCAAAAC
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s oryCun1.scaffold_203931 85122 429 - 102346 ACAGCAAGGTCATGTTCCCTACCCATTCCATGGGG-AGTCGTATTC-CAGTGGGAAAGGGA---AATC---------CTTCAGCAGG----TGGTCCTAAGCCGTGGGCCAGAGCGTT--TGGGTGGGTGCCAGAA--CGCCAAGCCAGGC-GTCATCCTGGCCAC------TGGAGGTCAGGTTCGCAAGGATGAACCAGGAGGCTTGGGTTTTTCCACCATCCTGCTGCCATGATGCTGCCGTCACACCGTGGGTGGTGGATCTGTCCAAGGAAACTTGAATCAAAGCAGTAAAC-CTAAAGACTGAGCACCTGCCCCGTGTTCAGCCCTGACCGGTGCTGTGAGCTAGGGGAAAGCTCACCAAATAAA--TGTGCAAAT-CCAATCCTGCCCTAAGGGACCTGACGTTCCC-ACGGC-AAAACCCCACTT-GCTGGTTGCCAAGGCG-ATGGTCCACCACGGC
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s bosTau2.chr4 19328769 449 - 69556449 AAAGCAAGGCCATGTTTCCCATCCATTTGGGAAGG-ATTTTCATTC-CAGTGGGAGAGGGAAGTATTCCAGTGTGGACTTCAGTGGA----TGGTCCCTCGACCTGGGTCAGCAATGGGTCAGTTGAGGCCCAAGA--CCCCAGGACCAGCCCCCAGGAGCCTCCTTCTCACTAGTGGTCATGTGCAGTAGAACAAAAGAGGAGGCTTGGG-TTTCCCACCAACCTGCCATTGTGATGCAGCCGTCACACAACAGGAGGTGGATCTGTCCAAGGAAATTGGAATCTAAGcaaccaat-tttaagactgagcacctac-ttgtgctcagccccaactggtgctatgggct-gag--aagctcaccaaataaa--tattaaaatgcaagccctgccctcagggaccttgcattccagatggc-agaatcccactcaccagcatgcaaAGGCTGCCGTTTCACCATGGC
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52863606 419 - 63938239 AAA-CAAGACCATGTTTCCCTCTCATTCGGGGTAG-ATTTATACTC-CAGGGGGAA--------GTTCTA----GGGCTTTAGCGAA----TAGTCCCAAGACCTGGACTGGCACTGG------TGAGTGCCG---------------GGCCGCCAGGAATGCCCTTCCCACCAGAGGTCACGTTTGGTGGGATGAACAAGGAGGCTTGGG-TTTTCCACCATCCTGCCACTATGATGAGGCCATCATACTCTAGGTGGTGGATCTGTTCAAGGAAATTTGAATCAAAGCTATTAAC-TTTAAGACCgagcacctactttgtgctcagtcctgattggtgctatgggctagag--aagctcaccaagtaaa--cgttaaaat-ccagccttaccctcagggaccttgcattccagatggtaaaaatgccacacaccagcatgcaaaGGCTGGCCTCGCACCATGGC
|
|
i canFam2.chr14 C 0 C 0
|
|
s panTro1.chr6 129904336 435 + 161576975 A-AGCAAGGCCAAAATTACCAAAAA-TCTGGGCGG---TTTTACTCTCAGTGGTAAAGAAA---ACTC---------CTT-AGCAGG---GTGGTCCTGAGACCT-GACAAGCACTGC--TAGGTGAGTGCCAGGACTCCCCAGGCCAGGCCACCAGGATGGCCCTTCCCACTGGAGGTCACATTCAGGAAGATGAAAGAGGAGGTTTGGGGTTTGCCACCATCCTGCTGCTGTGTTTTTGCTATCACACAGTGGGTGGTGGATCTGTCCAAGGAAACTTGAATCAAAGCAGTTAAC-TTTAAGACTGAGCACCTGCTTCATGCTCAGCCCTGACTGGTGCTATAGGCTGGAG--AAGCTCACCCAATAAA--CATTAAGAT-TGAGGCCTGCCCTCAGGGATCTTGCGTTCCCAGTGGT-CAAACCGCACTCACCCATGTGCCAAGGTGGGGGATTTACCACAGC
|
|
i panTro1.chr6 C 0 C 0
|
|
s mm7.chr6 29004507 394 + 149646834 AAAGTAGAACCCTGTCTCCCACCCATTCTGTGGGG-AGTTTTGTTC-CAGTGGGAATGAGA---AATC---------ACTTAGCAGA----TGGTCCTGAGCCCTGGGCCAGCACTGC--TGAGGAAGTGCCAGGG--CCCCAGGCCAGGCTGCCAGAATTGCCCT------------TCGGGCTGG--AGGATGAACAAAGGGGCTTGGGTTTTTCCATCACCCCTGCACCC-TATGTCACCATCAAAC--TGGGGGGCAGATCAGTGAGAGGACACTTGATGGAAAGCAATACAC-TTTAAGACTGAGCACA-GTTTCGTGCTCAGCTCTGTCTGGTGCTGTGAGCTAGAG--AAGCTCACCAAATACA--TATAAAAAT-C--------------AGAGGCTCATGTCCCT-GTGGT-TAGACCCTACTC-ACGGCG---------GTGTACTCCACCACAGC
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56198283 409 + 187371129 AAAGTAAAACCAGGTCTCCCACCCATTCTGTGGGGCAGTTTTGTTC-CAGTGGGAATGAGA---AATC---------ACTTAGCAGA----TGGTCCTGAGCCCTGGGCCAGCACTCC--TGAGGAAGTGCCAGGG--CCTCAGGCCAGGCTGCCAGAATTGCCCT------------TCGGGCTGG--AGGATGAACAAAGGGGCTTGGGTTTTTCCACCACCCCTGCACCCTTGTGTCACCATCCAGCTGTGGGTGGCAGATCAATGCAAGAAAACTTGATCGAACGCAATACACTTTTAAGACTGAGCACA-GCTCTGTGCTCAGCCCTGACTGGTGCTGTGGGCTAGAG--AAGCTCACCAAATAAA--CATAAAAAT-C--------------AGAGGCTTTTGTCCCT-GCGGT-CAGACCCTACTCAACAGCGTGCCAAGGCGCGTACTTCGCCACAGC
|
|
i rn3.chr4 C 0 C 0
|
|
e monDom2.scaffold_22 30304514 2024 - 46578359 I
|
|
e echTel1.scaffold_281576 2785 444 + 53044 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=53964.000000
|
|
s hg17.chr7 127490543 88 + 158628139 AG--CTGAACAGCCAAATGCATGGTGCAGTTGACAGCAGGTGGGAAATGGTATGAGCTGAGGGGGGCCGTGCCC----AGGGGCCCAC--AGG-GAA---
|
|
s rn3.chr4 56198692 81 + 187371129 AGCCCCACACAGTTGAAAATACAGTGCTGTCTTCAACGGAGGAGAAAGGACCGGAGCTGGGGGTGGCAGTGCCC----AG-----------GG-GAC---
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29004901 81 + 149646834 AGCCCCGCACCGCTGGAAGTACAGTGCTGTCTTCAACAGGTGTGAAAGAACCTGAGCTGAGGGTGACAGTGCCC----AG-----------GG-GAA---
|
|
i mm7.chr6 C 0 C 0
|
|
s panTro1.chr6 129904771 88 + 161576975 AG--CTGAACAGCCAAATGCATGGTGCAGTTGACAGCAGGTGGGAAATGGTATGAGCTGAGGGGGGCCGTGCCC----AGGGGCCCAC--AGG-GAA---
|
|
i panTro1.chr6 C 0 C 0
|
|
s canFam2.chr14 52864025 83 - 63938239 AA--CTGAGCAGCTGAA---CCAGCGCACTCCTCAGCAGGC-GGAAATG--CTGAACTGAGAGTGTCAGTGCTC----AGGGGCCCAC--AGGCTAA---
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19329218 84 - 69556449 AA--CTGAGCAGCTGAG---ACAGTGCAGTCCTCAGCAGGTGGGAAATG--CTGAGCTGTGGAGGGCAGTGCCC----AGGGGCCTAC--AGGCTAA---
|
|
i bosTau2.chr4 C 0 C 0
|
|
s oryCun1.scaffold_203931 85551 88 - 102346 AG-CCCACA-AGCTGAAAGCACAGTGTGGCCCCCAGCAGGTGCCATGTGGAGTGACCCGAGAGTGGCAGTGCCC----GGGGGCCCAC--AGG-GAG---
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s loxAfr1.scaffold_2979 35108 78 - 113413 AG-----------CGGGAGCACAGTGCCCTCATCAGCAGATGGGAAAGG-TATGAACTGAGGA-GGCAGTGCCC----AGGGGCCCAC--AGACCAA---
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s monDom2.scaffold_22 30306538 82 - 46578359 AA--CTGCAAAGCAAAACATA-----------TCAGCAAATGTGAGATA----GGGCATAATAAAGCCAAGCCCCTCTGGGGGACCACCAAGG-tagtaa
|
|
i monDom2.scaffold_22 I 2024 C 0
|
|
e echTel1.scaffold_281576 2785 444 + 53044 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=65154.000000
|
|
s hg17.chr7 127490631 69 + 158628139 CCCTGC---TTGCACTTTGTAACATGTTT---AC-T-----TTTCagggcatcttagcttcta---ttata--gccaca-tcccttt
|
|
s rn3.chr4 56198773 74 + 187371129 CCCTGC---TTACAGTCTATAGCATCTCC---AT-ACC---TTTCAGGGCACATTAGCATCCACAGCTATC--GTAGCA-CACTGTT
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29004982 77 + 149646834 CCCTGC---TTGCAGTCTATTGCATTTAC---AT-ACCGCATTTCAGGGCACATTAGCATCCACTGCTATG--GTAGCA-CACTGTT
|
|
i mm7.chr6 C 0 C 0
|
|
s panTro1.chr6 129904859 69 + 161576975 CCCTGC---TTGCACTTTGTAACATGTTT---AC-T-----TTTCAGGGCATCTTAGCTTCTA---TTATA--GCCACA-TCCCTTT
|
|
i panTro1.chr6 C 0 C 0
|
|
s canFam2.chr14 52864108 74 - 63938239 CCCTGC---TCCCACTTCGTAGCATTTTT---GC-T-----TTTCAGGGCACGGCAGCATTTATTACTGTGTAGCCACA-TCCCTCT
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19329302 74 - 69556449 CTGTGC---TTGCACTTGGCAGCAGTTTT---AC-T-----TTTCAGGGCACGTCAGCATCTATTACTGTGATGCCACA-TCCCTTT
|
|
i bosTau2.chr4 C 0 C 0
|
|
s oryCun1.scaffold_203931 85639 73 - 102346 CCCTGC---ATGTACTCTGTAGCTTGTGT---AA-AC----TTTTAGGACACTGCTGGACCTAGTGCTGTG--TAGCCA-CATCTTT
|
|
i oryCun1.scaffold_203931 C 0 I 698
|
|
s loxAfr1.scaffold_2979 35186 74 - 113413 CCCCGC---TTGCACATCTTAGCATTTTT---AC-T-----TTTCAAGGCACGTTCACATCTATTACTGTGTAGCCACA-TCCGTTT
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s echTel1.scaffold_281576 3229 79 + 53044 CCCTGCTTGTTGCACTTCTTAGCGTTGTT---ACGT-----GGTCGAGGCACATTTGCCTTGATTACTACGTAGCCATATTTCCTTT
|
|
i echTel1.scaffold_281576 I 444 C 0
|
|
s monDom2.scaffold_22 30306622 77 - 46578359 ctgtat---tgtaattatagagcacatttctaat-t-----tttcaaaccccttgaacatccattctcacctcccaata-ccacttc
|
|
i monDom2.scaffold_22 C 0 C 0
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=21214.000000
|
|
s hg17.chr7 127490700 39 + 158628139 ga---aacaagataactgagaattt---a------------aaaat----aagaaaataca-------------
|
|
s panTro1.chr6 129904928 39 + 161576975 Ga---aacaagataactgagaattt---a------------aaaat----aagaaaataca-------------
|
|
i panTro1.chr6 C 0 C 0
|
|
s rn3.chr4 56198847 37 + 187371129 GA---CACAGGATAACTGGGATCAT---A------------AAAAT----AAGAAAATA---------------
|
|
i rn3.chr4 C 0 I 166
|
|
s mm7.chr6 29005059 37 + 149646834 GA---CACGGGATACCTGGGGTCGT---A------------AAAAT----AAGAAAATA---------------
|
|
i mm7.chr6 C 0 I 449
|
|
s bosTau2.chr4 19329376 39 - 69556449 GA---AGCGGGATAGCTAAGAATTT---A------------ATAAG----AAGAAAAtacc-------------
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52864182 49 - 63938239 GAAGCAGCAGCATAGCTGACAATTTAAAA------------ATaagaactaagaacatacc-------------
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 35260 39 - 113413 GA---AGCCGGATAACTGAGAATTT---A------------AACAT----AACAAAACATC-------------
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s echTel1.scaffold_281576 3308 40 + 53044 GA--TAGCTTGATAACTTGGGATTT---T------------GATGT----AAGAAAACATG-------------
|
|
i echTel1.scaffold_281576 C 0 C 0
|
|
s monDom2.scaffold_22 30306700 64 - 46578359 aa---agtaggtcaggcaggttttt---atccccattttagaaacc----aggaagctaaaggattaacttcta
|
|
i monDom2.scaffold_22 C 0 C 0
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e oryCun1.scaffold_203931 85712 698 - 102346 I
|
|
|
|
a score=-21810.000000
|
|
s hg17.chr7 127490739 128 + 158628139 taagaccataacagccaacaggt-ggc------------------------------------aggac---------------------------------caggactatagcccaggtc--ctctgatacc------------------------------------------cagAGCATTACGTGAGC--CAGGTAATG---------AGGG---ACTGGA-----ACCAGGGA-----------GACC--------------------GAGCGCTTTCTGGAAAAGAG
|
|
s panTro1.chr6 129904967 128 + 161576975 taagaccataacagccaacaggt-ggc------------------------------------aggac---------------------------------caggactatagcccaggtc--ctctgatacc------------------------------------------cagAGCATTACGTGAGC--CAGGTAATG---------AGGG---ACTGGA-----ACCAGGGA-----------GACC--------------------GAGTGCTTTCTGGAAAAGAG
|
|
i panTro1.chr6 C 0 C 0
|
|
s oryCun1.scaffold_203931 86410 158 - 102346 TAGGACTGTAACAGCCAACAGGT-GGC------------------------------------AGGAG---------------------------------CAGGTCTGGAGCCCAGAGCGTCCCTCACGCCGGG---------------------------------------TAACGCTCT----------CAGGGCAGG---------GGAC---ACGGGAATCCTTTCTGTAT---GTGATCTTAGTCAAAAGGCTGAGAAGTGATGGGAGTGCTTTCTGGAAGAGAG
|
|
i oryCun1.scaffold_203931 I 698 C 0
|
|
s rn3.chr4 56199050 245 + 187371129 ----------ACTGCTTGAAGGT-AGTTTTATACAGTGTTTTAAATAATGTTGTGTGCATGAAAGAAGTTTTCACAGCGTGAAATTTTCTTCTCGTGGCATCATGTCTGCACTCAAAAAC--CCTTCAGGTTTTGGAGCGTTTTGGATCTGTTAAGAGATGTTTAACCTATACCTAAAGCTATAC-TGACAAACAGGTTACA---------GGACCAGACCAGA-----CCCTGGAT-------CCTCAGCC------CTGTGAAGT-----GTGTCCTTCCAGTCAGGTG-
|
|
i rn3.chr4 I 166 I 42
|
|
s bosTau2.chr4 19329415 145 - 69556449 taagaccataacagcagacaggg-ggc------------------------------------aggac---------------------------------caagtctagaatcctggtc--ctctgacctc------------------------------------------cagagtgccccttGAGC--CAGGTGGTA---GTCTCTGGAG---ATGTGA-----ACAAAGTA-----------GGGC------A-GGGAGGGCAG--GAGTGTTTGCTGGAAGAGAG
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52864231 146 - 63938239 taagaccataacggcagacaagt-agc------------------------------------agggc---------------------------------cgagactagagttcaggac--ctctgactcc------------------------------------------cagAGTGTCCCGGGAGC--CAGGTAATG---CTCCCTGGAG---GTGCAA-----ATAGGGTT-----------GGGC------AGGGGAGACCAG--AAGTGCTTACAGGGAGAGAG
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 35299 129 - 113413 TAAAACTGTAacagcccacaggt-ggc------------------------------------agaag---------------------------------caagactagaacccaggtg--ctctgacccc------------------------------------------caga--------------------aatg---ctctctAGTG---GCACAA-----ACAGGGTT----------GTAGC------AGGAGAGACCAG--AAGTGCTTTCTGGAAAAGAA
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s echTel1.scaffold_281576 3348 118 + 53044 TCAGACGGTTGCAGCCAATGGGTAGGT------------------------------------GGAAG---------------------------------CAGGAGAAAGCTTCAGGTC--CTCCAACCCC------------------------------------------CCAA--------------------AATG---CTCTCCCGTG---GTGCAG-----ACCGAGCT----------GGAGC------AGGA--------------ACTTTCTGGAAGGGAG
|
|
i echTel1.scaffold_281576 C 0 C 0
|
|
s monDom2.scaffold_22 30306764 128 - 46578359 taagatt-caacacctagtaagt-ggc------------------------------------gtgat---------------------------------ctag-------------tc--tcctgattcc------------------------------------------caacttgt-----------ttgacCATGGACCTATCTGGTG---AGAGTG-----ACCATGATTAAATAGCTTTGCGC------TAGA----------GAG-GCTTCCTGGAAAGGGT
|
|
i monDom2.scaffold_22 C 0 C 0
|
|
e mm7.chr6 29005096 449 + 149646834 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=103235.000000
|
|
s hg17.chr7 127490867 275 + 158628139 GAGTTTCGAGGTAGAGTTTGAAGGAGGTGAGG---GATGTGAATTGCCTGC----AGAGAGAAGCCTGTTTTGTTGGAAGGTTTGGTGTGTGGAGATGCA-----GAGGTAAAAGTGTGAGCAGTGAGTTACAG------------CGAGAGGCAGAGAA---AGAAGAGACAGGAGGGCA----------AGGGCCATGCTGA-AGGGACCTTGAAGGGTA-AAGAAGTTTGATATTAAAGGAGTTAAGAG--TAGCAAGT-------TCTAGAGAAGAGGCT-------GGTGCTG------------TGGCCAGGGTGAGAGCTGCTCTGGAAAATGTG
|
|
s panTro1.chr6 129905095 275 + 161576975 GAGTTTCGAGGTAGAGTTTGAAGGAGGTGAGG---GATGTGAATTGCCTGC----AGAGAGAAGGCTGTTTTGTTGGAAGGTTTGGTGTGTGGAGATGCA-----GAGATAAAAGTGTGAGCAGTGAGTTACAG------------CGAGAGGCAGAGAA---AGAAGAGACAGGAGGGAA----------AGGGCCATGTTGA-AGGGACCTTGAAGGGTA-AAGAAGTTTGATATTAAAGGAGTTAAGAG--TAGCAAGT-------TCTAGAGAAGAGGCT-------GGTGCTG------------TGGCCAGGGTGAGAGCTGCTCTGGAAAATGTG
|
|
i panTro1.chr6 C 0 C 0
|
|
s rn3.chr4 56199337 252 + 187371129 GGAATTTGAGGTAGATTTTGGAGGAGCTGAGG---GATGTGA------------------------TGTTTTACTAGACAG-TGGGTATG------TGGA-----GGGGTAAGAGTCGGAACAGGATGTGACAA-------------GGAAGACTGAAAA---GAACGGGACAGAACAACA------------GGAAGTGCTGA-GAGGACTTTGTGGGCCG-AGAAAGT----------GGCTATTGAAAGAGTCCCAAGTGCCACAGTCTGGAGCGAAGGCT-------TGTG--GTAGCTGGTGTCATGGCTGGTGTCAGA-CTGCTCTGGGGTA-GCG
|
|
i rn3.chr4 I 42 I 7
|
|
s mm7.chr6 29005545 243 + 149646834 GGAGTTGGAGGTAGATTTTGGAGGATCTGAGGGGTGATGTGA------------------------TGTTTTATTGGACAC-TTGGTATGT-----TGAA-----GGGATGAAAGTCCAAACAGGAAGTGACAG-------------GGAAGACTGAAGA---GACCGGGAAAGAGTGACA------------GGAAGTGCTGA-GAGGACTTTATGGGCCA-CAAAAGT----------GGCTTCTGAAAGA-TCCCACGTGCCACAGTCTGGAGCGAAGGCT-------CGTG--G------------TGGCTGGTGTCAGA-TTGCTCTGGGGCT-GTG
|
|
i mm7.chr6 I 449 I 7
|
|
s oryCun1.scaffold_203931 86568 246 - 102346 ------------ACATTTTGCAGGTGCTGAGG---GAGGTGAGCTCGCTGC----AGGAAGGAGGTGATTTTGTTGGACGC-TTGGTGTG------TGCA-----GGTGCATGGGT----GTAGGAGACGGTGG-------------GAGGTGCAGAAGA---AAGAAGTAGGAGGGAAAA------------GGACATGTTGA-GGGGCAGCTGAGGGCCG-CAGAAGTCAGATGGTCAGACAGCTGGGAC--TCGCAAGT-------TCCGGAGCAGAGGCTG------GGTG--G------------TGGCCAGGGTGGAA-CCTGCCCAGAAAA-CCG
|
|
i oryCun1.scaffold_203931 C 0 I 2
|
|
s bosTau2.chr4 19329560 275 - 69556449 GAGTTCCGAGGCCAATTTTGCAGGCAGTGAGG---GAAGTGAATTGCCTGG----AGGGAGGAGGCTGTTTTGTTTGAAGCTTCGGTCTG---AGACACCGAAGGGAGGTGATAGGGTGAGCAGCTAGTTACAA------------AGAAAGGCAGAGGA---AGCAAAGATGGGAGGGAA----------GG-GTTATGTTGA-AGAGGACTTCAGGGGCC-AAGACATTTGCTACTGAAAGAGATAAGGG--TGAAAAGT-------TCTAGAAC-GAGACT-------CATGTGA------------TGGACAGAGTCAGACCTGCTCGAGAAGATAAG
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52864377 263 - 63938239 GACTT--GGAGGTGATTTTGCAGGAGGTGAGG---GATGTGAATTGCCTGA----ATGGCGGAGGCTGTTTTG--------TTCATGCTG---AGACACC-----GGGGTGAAGGTATGTGCAGTCAGTTATAA------------AGAAAGGCTGCCAA---AGGCAAGGCGGGAGGGAA----------AGTGACATGTTGA-AGAGGTCTTCAGTGGTCAAAGAAATTTGATATCAGAAGGGTCAAGAA--TCGAAAGT-------TCTAGAACGGAGATT-------CATGAGA------------TAGACAGAGTAAGACCCGTTCTGGAGAGTATG
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 35428 265 - 113413 GAGTTTTGAGGCAGGTTTTGGAGGAGGTGAGC---GTTGTGAATTGCCTGG----AGGAAGAAGGTTATTCTGTTGGAAACTTTGGTGTATTAAGCTATG-----AACATGAAGGTGTGAAGAGTGACTTACAG-------------------------ACGTAGGAGAGATGAGAGGAAA----------GGGGGCATGTTGA-AGAAGGCTTGAGAGACA-AAGAATTTGCATGTTGAAAGAATATCAAG--TGGAAAGT-------TCTAGAACAGAGACT-------CACATGA------------CAGACGGGTTCAGGCCTGCTCTGGTAAACGTG
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s echTel1.scaffold_281576 3466 235 + 53044 GAGCTTGGAGGTGGATGT--------GTGAGG---ATCGTCAATGGCCTGG---AAGGAGGGAGGCTGATGAACAGGAAGCTTTGTTGTGT---------------------GGATGT---GGGTCCCTCCTGG-------------------------A---GAAAGGGAGGAGAGGGAA----------GCGGTTGTATTGA-AGAA-TCTTGAGTGACA-GCCAAGGCGGCTATTGAGAGAACACTGCA--TGGAAGGT-------TCTAGAACAGTGTCT-------TGTAGGA------------TGGACAGAGCCAGGCCTGCTCTGATGGGCGTG
|
|
i echTel1.scaffold_281576 C 0 I 298
|
|
s monDom2.scaffold_22 30306892 303 - 46578359 GAGTTTTGAGGCAGGTTTTGAAGGAAGAGAAG---GATGAGAAGAGTCAGAGGGAAGAAGAAAGGCTCTGGAGCT-GAGACTACAGCCTATTCAGATACA-----CA---AAAGGGAAAAGGAGCGAGTTATATTCTGAGATTGACTGGGTTGGAGCCAA---AGGAGATGCAAGGTGGGAAAGTCTTAGGAGGAAGGTGCTGAGAAAGGTTTTGAAGGGCA-AGGAAGTTTAGAGGTGAAACAGTCAGCA---TCGAGCAT-------CCTTAAGCAAAGGGTGCCATCACACAAGA------------TGACCACTGTCTGC-TACCTCTTCAAAATCTC
|
|
i monDom2.scaffold_22 C 0 C 0
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=111620.000000
|
|
s hg17.chr7 127491142 122 + 158628139 ACCCAGATCCTC-ACAACCACCTAATCAGGCTGA---GGTGTCTTAAGCCTTTTGCTCACAAAACC-----TGGCACAAT----------GGCTAATTCCCAGAGTGTGAAACTTCCTAAGTATAAAT-------GGTTGT----------CTGTTTT
|
|
s panTro1.chr6 129905370 122 + 161576975 GCTCAGATCCTC-ACAACCACCTAATCAGGCTGA---GGTGTCTTAAGCCTTTTGCTCACAAAACC-----TGGCACAAT----------GGCTAATTCCCAGAGTGTGAAACTTCCTAAGTATAAAT-------GGTTGT----------CTGTTTT
|
|
i panTro1.chr6 C 0 C 0
|
|
s rn3.chr4 56199596 130 + 187371129 ACCTTGGTCA----------CCTCATCAAGCTGG---AATGTCCTGATCCTTTTGCTCAGAAAACC-----TTGCACTGT----------GGCTTGTTCCCAGATTGTGAAACTTCCCATATGCAAAAATGCTTGGTTTGGGTTTTGTTTTTTTTTTT
|
|
i rn3.chr4 I 7 I 17
|
|
s mm7.chr6 29005795 120 + 149646834 ACCTTGGTCA----------CCTCATCAAGCTGG---AATGTCCTGAGCCTTTCGCTCAGAGAACC-----TTGCACTAT----------GGCTTGTTCCCAGATTGTGAAACTTCCCATATGCAAAAATGCTTGGTTTGG----------TTTTTTT
|
|
i mm7.chr6 I 7 I 12
|
|
s oryCun1.scaffold_203931 86816 106 - 102346 ACTTAGGTCATT-GCTGCCTCTGCACTGGGCTGA---GGCGTCTCCAGCTCTCTGCTCTCAAAACC-----TGGCAC--------------------------AGTGTGAAACTCCCCAAATGCAAGC-------GATTGT----------CTTCCTT
|
|
i oryCun1.scaffold_203931 I 2 I 1
|
|
s bosTau2.chr4 19329835 123 - 69556449 TCC----TGATG-ATCACAGCCCAGTCAGACCGG---GATGTTTTAAGCCTTTTGCTCACAAAACCTGGCATGGCACTAG----------GGCTTGTTCCCAGAGTGTGAAACTTCCAAAATATAAAT-------GATTGT----------GTTTTTC
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52864640 123 - 63938239 ACCTAGATAATC-ATTACCACCCAGCCAGGCTGG---GATCTTTTAAGCCTTTCACTTAC----CCAAACCTGGCACCAT----------GGCTCATTCTCAGAGTGTGAAAGTTCTAAAATGTAAAT-------GAATGT----------CTTTTTT
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 35693 122 - 113413 ACCTAAATCACC-GTGGCCACCAAGTCAGGCTGA---GGTGTTTTAAGCCTTTTTCTCACAAAACC-----TGCCACCAT----------GGATCATTCTCATAGTGTGAAACTTCACAAATGTAAAT-------GGTTCT----------CTCATTT
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s monDom2.scaffold_22 30307196 136 - 46578359 ACCAACATCATTAATGATCACCTGCTCATACAGGAAAAAGAATCTGGTCCCTTCTTTTATAAAACC-----TTATGGTATCAATTCTAAAGCCCAACTTCTACAGAAGGGCACAGCCAAACTTAAATT-------GTTTGC----------ACTTTTC
|
|
i monDom2.scaffold_22 C 0 C 0
|
|
e echTel1.scaffold_281576 3701 298 + 53044 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=-9220.000000
|
|
s hg17.chr7 127491264 29 + 158628139 TGT----------------AACTTAAAAAAAAAAAAAAAAGTTTg
|
|
s panTro1.chr6 129905492 28 + 161576975 TGT----------------AACTTAAAAAAAAAAAAAAA-GTTTg
|
|
i panTro1.chr6 C 0 C 0
|
|
s rn3.chr4 56199743 42 + 187371129 TGTTTTTAAATATATGTGTAAC--AACAGCAACAACAAATTTTT-
|
|
i rn3.chr4 I 17 C 0
|
|
s mm7.chr6 29005927 3 + 149646834 TGT------------------------------------------
|
|
i mm7.chr6 I 12 I 51
|
|
s bosTau2.chr4 19329958 15 - 69556449 TGT----------------AACTTAAAACAA--------------
|
|
i bosTau2.chr4 C 0 I 47
|
|
s canFam2.chr14 52864763 14 - 63938239 TGT----------------AACttaaaaaa---------------
|
|
i canFam2.chr14 C 0 I 20
|
|
s loxAfr1.scaffold_2979 35815 17 - 113413 TGT----------------AACTTAAAAATACA------------
|
|
i loxAfr1.scaffold_2979 C 0 I 15
|
|
s monDom2.scaffold_22 30307341 14 - 46578359 TGT----------------AGCAAAGAAAA---------------
|
|
i monDom2.scaffold_22 C 0 I 8316
|
|
e echTel1.scaffold_281576 3701 298 + 53044 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e oryCun1.scaffold_203931 86922 1 - 102346 I
|
|
|
|
a score=25395.000000
|
|
s hg17.chr7 127491293 269 + 158628139 gccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccaaggtggggggatcacaaggtcactagatggcgagcatcctggccaacatggtgaaaccccgtctctactaaaaacacaaaagttagctgagcgtggtggcgggcgcctgtagtcccagccactcgggaggctgagacaggagaatcgcttaaacctgggaggcggagagtacagtgagccaagatcgcgccactgcactccggcctgatgacagagcgaga
|
|
s panTro1.chr6 129905520 269 + 161576975 gccgggtgcggtggctcacgcctataatcccagcactttgggaggccaaggtggggggatcacaaggtcactagatggcgagcatcctggccaacatggtgaaaccccgtctctactaaaaacacaaaagttagctgagcgtggtggcgggcgcctatagtcccagccactcgggaggctgaaacaggagaatcgcttaaacctgggaggcggagagtacagtgagccaagatcgcgccactgcactccagcctgatgacagagcgaga
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e echTel1.scaffold_281576 3701 298 + 53044 I
|
|
e loxAfr1.scaffold_2979 35832 15 - 113413 I
|
|
e canFam2.chr14 52864777 20 - 63938239 I
|
|
e rn3.chr4 56199785 0 + 187371129 C
|
|
e mm7.chr6 29005930 51 + 149646834 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e bosTau2.chr4 19329973 47 - 69556449 I
|
|
e oryCun1.scaffold_203931 86922 1 - 102346 I
|
|
|
|
a score=-6796.000000
|
|
s hg17.chr7 127491562 37 + 158628139 ttccgtcttaaaaaaaaaaaaaaaaaaGTTTGTTTTT
|
|
s panTro1.chr6 129905789 32 + 161576975 ttccgtcttaaaaaaaaaaaaa-----GTTTGTTTTT
|
|
i panTro1.chr6 C 0 C 0
|
|
s oryCun1.scaffold_203931 86923 37 - 102346 TTTTTTTTTCCCCCATAATTTAAAAATGTTTGTTTTA
|
|
i oryCun1.scaffold_203931 I 1 C 0
|
|
s loxAfr1.scaffold_2979 35847 9 - 113413 ----------------------------TTTGTTTGT
|
|
i loxAfr1.scaffold_2979 I 15 I 3
|
|
s echTel1.scaffold_281576 3999 30 + 53044 ---CACCTTAAGATATATATGTCTATTG----TTTAT
|
|
i echTel1.scaffold_281576 I 298 I 3
|
|
s mm7.chr6 29005981 10 + 149646834 ---------------------------GTTTTATTTT
|
|
i mm7.chr6 I 51 C 0
|
|
s rn3.chr4 56199785 10 + 187371129 ---------------------------GTTTTATTTT
|
|
i rn3.chr4 C 0 C 0
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e canFam2.chr14 52864777 20 - 63938239 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e bosTau2.chr4 19329973 47 - 69556449 I
|
|
|
|
a score=304552.000000
|
|
s hg17.chr7 127491599 209 + 158628139 AA--AAAA-------ATCT--AAAT-AAAATAACTTTGCCCCCTGCTCTTTGTTTCCTGTCGCCG-----TTCCTGGAGGGGCTTCGGGAGAGCTGTTTGTGTGTGACAGGGCAAGGCCTGGCTGGCCCCCATCCATCACTGGGGTCAGCTCCGCCCCAGGCTTGGCCACAGCCAGCCGCCAGTTATTCAGG-CAAAAGGATTACCCTGTAAAGAAAACAGAGCTGG
|
|
s panTro1.chr6 129905821 209 + 161576975 AA--AAAA-------ATCT--AAAT-AAAATAACTTTGCCCCCTGCTCTTTGTTTCCTGTCGCCG-----TTCCTGGAGGGGCTTCGGGAGAGCTGTTTGTGTGTGACAGGGCAAGGCCTGGCTGGCCCCCATCCATCACTGGGGTCAGCTCCGCCCCAGGCTTGGCCACAGCCAGCCGCCAGTTATTCAGG-CAAAAGGATTACCCTGTAAAGAAAACAGAGCTGG
|
|
i panTro1.chr6 C 0 C 0
|
|
s oryCun1.scaffold_203931 86960 221 - 102346 CT--GAAAAATAGATATTT--AAATAAAATCAACTTTGCCACCTGGTTTTTGTTTGCTGTCGCCTTTTGGGGTGTGTGGGGGCTTCAGGAGAGCTGTTTGTGTGTGACAGGGCAAGGCCTGGCTGGTCTGCAGCCATCCCTGGGGTCAGCCCCG-CCCGGGCTTGGCCACAGCCAGCTGCTGGTTATTCAGG-CGAAAGGATTACCCCGGCGGGCGCGCAGAGCTGG
|
|
i oryCun1.scaffold_203931 C 0 I 3510
|
|
s mm7.chr6 29005991 188 + 149646834 GT--GTCA-------ATTC--AAAT-AAATTAATGATGCCTCCACG-CTTTGTCTTCTGCCTCCT-----GTTGTGGAGGGGCTTTTGGAGAGCTGTTTGTGTGTGACAGGGCAAGGCCTGGCTGGCGTCCAGCCATCACCAGGGTCAGCCCCA-CCCGGGCTTGGCCACAGCCAGCTACCAGTTATTCAGG-CGAAAGGATTACCCT-------------------
|
|
i mm7.chr6 C 0 I 4005
|
|
s rn3.chr4 56199795 203 + 187371129 GT--GTAA-------ATTC--AAAT-AAATTAATGATGCCTCCCTG-CTTTGTTTTCTGTCTCCT-----GCTGTGGAGGGGCTTCCAGAGCACTGTTTGTGTGTGACAGGGCAAGGCCTGGCTGGCGTCCAGCCATCACCAGGGTCAGCCCCA-CCCGGGCTTGGCCACAGCCAGCTACCAGTTATTCAGG-CGAAAGGATTACCCT----AAAGCCCAGGGCTGG
|
|
i rn3.chr4 C 0 I 5140
|
|
s canFam2.chr14 52864797 203 - 63938239 aa--aaaa-------aGTC--AAAT-AAATTAACTTTGCC-CCTGGTCTTTGTTTTCTGTCACCC-----TTTGTGGAGGGGCTTTAGAAGAGCTATTTGTGTGTGACAGGGCAAGGCCTGGCTGGCCTCCCTCCCTCACCAGGGTCAGCTCTG-CCCAGGCTTGGCCACAACCGGCCACCAGTTATTCAGG-CTAAAGGATTCCCCC----AAAGCACAGAGCTGG
|
|
i canFam2.chr14 I 20 I 2164
|
|
s bosTau2.chr4 19330020 157 - 69556449 -------------------------------------------TGGTCCTTATTTTTGGTCGTCT-----GCTGTGGAGGGGCTCCAGAAGGGCTGCCTGTGTGTGACAGGGCACTGCCTGGCTGGCCCCAGTCCATCCCTGGGATCAGCTCTG-CCTGGGCTTGGCCACAGCCAGCCACCAGTTATTCAGG-CTAAAGGATTCCCC--------------------
|
|
i bosTau2.chr4 I 47 I 2301
|
|
s echTel1.scaffold_281576 4032 170 + 53044 AAATAAAA-------ACCCTTCAAT-AAAGTCCCTTTGGCCCCTGCTCTTTTCTTTCTGTGACC------ATTCCAGAGGGGCTTCAGAGGAGCCATCTAGGTGTGACAGG--TCA---TGGCTCCCCTCCA------------------TTCACCCCTGCTGTGGTCACAGTCAGCCGCCAGTTCTCTGGGACAAAAGGGTTGCCC--------------------
|
|
i echTel1.scaffold_281576 I 3 I 4946
|
|
s loxAfr1.scaffold_2979 35859 204 - 113413 AA--AAAA-------ATCC--AAAT-AAATTAACTTTGCCCCCAG-GCTTTGTTTTCTGTCGCT------GTTGTGGAGGGGCTTCAGAGGAGCCGATTGTGTGTGACAGGGCTCAGCTTGGCTCCCCTCCATCTGCCGCTGGGGTCAGCTCCGCCCCAGGCTTGGCCACAGCCAGCGGCCAGTTATTCAGG-CGAAAGGATCACCCC---CAAAGCACAGAGCTGG
|
|
i loxAfr1.scaffold_2979 I 3 I 2075
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=11195.000000
|
|
s hg17.chr7 127491808 97 + 158628139 GTTTGGACGCTGAGAGGACTGGGAAA--CAGGTTGCAGGGAGGCACAGGAAGCACACACCAAGAGCCAGAGAGAGGCC-TCTGTGCCATCCCAAGGAATG----
|
|
s oryCun1.scaffold_203931 90691 78 - 102346 GCTCGGACGCTG--AGGACTGCAAAG--GGAGGTGCAGCCAAGCGCGAA------ACCCCAG-------GGAGAAGCTGTGCCCGCC-----AGGGGAGG----
|
|
i oryCun1.scaffold_203931 I 3510 C 0
|
|
s mm7.chr6 29010184 104 + 149646834 ACATGGGTGCAGACAGAGCTGGGAAGTAGAGTGTGCAGAGTGGTGTAAGGAGCTCACCCCAGCACTGAAGGAAAAGGCACCTCCACCTCCTAAGGAAAGGGCTT
|
|
i mm7.chr6 I 4005 C 0
|
|
s panTro1.chr6 129906030 97 + 161576975 GTTTGGACGCTGAGAGGACTGGGAAA--CAGGTTGCCGGGAGGCGCAGGAAGCACACACCAAGAGCCAGAGAGAGGCC-TCTGTGCCATCCCAAGGAATG----
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e echTel1.scaffold_281576 4202 4946 + 53044 I
|
|
e loxAfr1.scaffold_2979 36063 2075 - 113413 I
|
|
e canFam2.chr14 52865000 2164 - 63938239 I
|
|
e rn3.chr4 56199998 5140 + 187371129 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e bosTau2.chr4 19330177 2301 - 69556449 I
|
|
|
|
a score=17930.000000
|
|
s hg17.chr7 127491905 91 + 158628139 AGGACAAAGAGAGGGGTCCTCGGGAAGAAGGGATCCACT-TTGGAGAGGCCCCTTAACACGGGACAGAGCAAG--------GACAGAAAGAGGCATCCAC
|
|
s panTro1.chr6 129906127 91 + 161576975 AGGACAAAGAAAGGGGTCCTCGGGAAGAAGGGATCCACT-TCGGAGAGGCCCCTTAACACGGGACAGAGCAAG--------GACAGAAAGAGGCATCCAC
|
|
i panTro1.chr6 C 0 C 0
|
|
s mm7.chr6 29010288 95 + 149646834 AAGAAAAAAAGGG---TCCCAAAGAAGGAGGGAGTCCTCGTCAGAGAAGCAACT--GTCTGAGACACAGCAAAAGATCAATGAGAAGACAGAGCGTCTAC
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_203931 90769 84 - 102346 AAGTCACAGAGGG-------AGGGAAGCAGGGAATGACTGCTGAAGATCCCCTT--GCCAGGG---CAGCAGG----CGAGGCCAGGGCGAGGCATCCAC
|
|
i oryCun1.scaffold_203931 C 0 I 1385
|
|
s bosTau2.chr4 19332478 87 - 69556449 AAGGCTAAGTGAGAGGTCCTCAGGAAGAAGGGAATCCACCTCAGGAAAGC---TTGACTTGAG--AGAGTATG--------GACAGGAAGGGGAATCCAT
|
|
i bosTau2.chr4 I 2301 C 0
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e echTel1.scaffold_281576 4202 4946 + 53044 I
|
|
e loxAfr1.scaffold_2979 36063 2075 - 113413 I
|
|
e canFam2.chr14 52865000 2164 - 63938239 I
|
|
e rn3.chr4 56199998 5140 + 187371129 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=15764.000000
|
|
s hg17.chr7 127491996 83 + 158628139 TGGGATGGAAGAAGGACAGGATCCA-----------------CAGGGAAAGAGGGATGAGGG----GAATGAAGAGAGAAGAAA------TAAAGAGTTCAGCATC-----ACCT
|
|
s panTro1.chr6 129906218 83 + 161576975 TGGGATGGAAGAAGGACAGGATCCA-----------------CAGGGAAAGAGGGATGAGGG----GAATGAAGAGAGAAGAAA------TAAAGAGTTCAGCATC-----ACCT
|
|
i panTro1.chr6 C 0 C 0
|
|
s mm7.chr6 29010383 95 + 149646834 AGAGAAGGGAGAAGG-CCGTGTTTA-----------------AAAGGGAAGGGGGACGAGGG--AAGAAAGAAAAGAGTGGAGATGTCTGTAGACACTCAAACATCGTAGAAAGC
|
|
i mm7.chr6 C 0 C 0
|
|
s bosTau2.chr4 19332565 106 - 69556449 TaagagggaaggattacaagattaagaaagaaggaaggcagggaggggaggagggaggaaggagaggaatgaaaagaggaGAAA----TATGTAAAGTTAAGCATC-----ACCt
|
|
i bosTau2.chr4 C 0 I 867
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e echTel1.scaffold_281576 4202 4946 + 53044 I
|
|
e loxAfr1.scaffold_2979 36063 2075 - 113413 I
|
|
e canFam2.chr14 52865000 2164 - 63938239 I
|
|
e rn3.chr4 56199998 5140 + 187371129 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e oryCun1.scaffold_203931 90853 1385 - 102346 I
|
|
|
|
a score=4247.000000
|
|
s hg17.chr7 127492079 41 + 158628139 CATGATGCAACTAATTTGGCACAATGCCCAGCACAATGTAC
|
|
s mm7.chr6 29010478 39 + 149646834 CATGA--CCATTGATTGGGTACCGGGTCCATTGCAGCCAGA
|
|
i mm7.chr6 C 0 C 0
|
|
s panTro1.chr6 129906301 41 + 161576975 CATGATGCAACTAGTTTGGCACAATGCCCAGCACAATGTAC
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e echTel1.scaffold_281576 4202 4946 + 53044 I
|
|
e loxAfr1.scaffold_2979 36063 2075 - 113413 I
|
|
e canFam2.chr14 52865000 2164 - 63938239 I
|
|
e rn3.chr4 56199998 5140 + 187371129 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e bosTau2.chr4 19332671 867 - 69556449 I
|
|
e oryCun1.scaffold_203931 90853 1385 - 102346 I
|
|
|
|
a score=7927.000000
|
|
s hg17.chr7 127492120 43 + 158628139 CCCTCCATTCTGA----TTTGGTGGCCAGAAGAATTGAGATTCTTGg
|
|
s panTro1.chr6 129906342 43 + 161576975 CCCTCCATTCTGA----TTTGGTGGGCAGAAGAATTGAGATTCTTGg
|
|
i panTro1.chr6 C 0 C 0
|
|
s mm7.chr6 29010517 42 + 149646834 GCTACAGATCTCA-----TAGGTAGCCTGAAGAATTGAGATCCTTCG
|
|
i mm7.chr6 C 0 C 0
|
|
s canFam2.chr14 52867164 46 - 63938239 CCCTCAGCTCTTGCTTGCTTAGTGACCAAAGGGACTGGGACTCCTG-
|
|
i canFam2.chr14 I 2164 I 10
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e echTel1.scaffold_281576 4202 4946 + 53044 I
|
|
e loxAfr1.scaffold_2979 36063 2075 - 113413 I
|
|
e rn3.chr4 56199998 5140 + 187371129 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e bosTau2.chr4 19332671 867 - 69556449 I
|
|
e oryCun1.scaffold_203931 90853 1385 - 102346 I
|
|
|
|
a score=26941.000000
|
|
s hg17.chr7 127492163 291 + 158628139 gccaggcacgatggctcatgcctataatcccagcactttggaaggtcaaggtgggtggatcacttgagaccaagagttcgagacaagcctggccaacatagcaaaaccccatctctactgaaaatacaaaaagtagccaggcatggtggcacgtgcgtgtaatcccagctacttggcaggctgaggcaggagaatcgcttg-aactcgggaggcagaggtggcagtgaaccgagatcatgccactgcactccagcctgggtggcaggtgagactctgtctcaaaaaaaaaaa
|
|
s panTro1.chr6 129906385 292 + 161576975 gccaggcacgatggctcatgcctataatcccagcactttggaaggtcaaggtgggtggatcacttgagaccaagagttcgagacaagcctggccaacatagcaaaaccccatctctactgaaaatacaaaaagtagccaggcatggtggcacgtgcctgtaatcccagctacttggcaggctgaggcaggagaatcgcttgcaactcaggaggcagaggtggcagtgaaccgagatcatgccactgcactccagcctgggtagcaggtgagactctgtctcaaaaaaaaaaa
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e echTel1.scaffold_281576 4202 4946 + 53044 I
|
|
e loxAfr1.scaffold_2979 36063 2075 - 113413 I
|
|
e canFam2.chr14 52867210 10 - 63938239 I
|
|
e rn3.chr4 56199998 5140 + 187371129 I
|
|
e mm7.chr6 29010559 0 + 149646834 C
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e bosTau2.chr4 19332671 867 - 69556449 I
|
|
e oryCun1.scaffold_203931 90853 1385 - 102346 I
|
|
|
|
a score=11265.000000
|
|
s hg17.chr7 127492454 58 + 158628139 aaaaaaa--TTGAGATTCTTGGATAGCAAGCCCATTATTTAACATGTAAGCAAATTATTC
|
|
s panTro1.chr6 129906677 60 + 161576975 aaaaaaaaaTTGAGATTCTTGGATAGCAAGCCCATTATTTAACATGTAAGCAAATTATTC
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19333538 57 - 69556449 AAAGAAA--TTGAGGCTCTCGTATATTAAGCCCATTATTT-ACATGTAAACCAGTTCTGC
|
|
i bosTau2.chr4 I 867 I 1
|
|
s canFam2.chr14 52867220 22 - 63938239 ----------------------ATATCAGGTC----------------AACTAGTTCTGT
|
|
i canFam2.chr14 I 10 I 1
|
|
s loxAfr1.scaffold_2979 38138 55 - 113413 AAAAGAA--TTGAGACTGT-GCACA-CAAGCCCGTTATTT-ACACGTAAGCAAGTGCTAC
|
|
i loxAfr1.scaffold_2979 I 2075 C 0
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e echTel1.scaffold_281576 4202 4946 + 53044 I
|
|
e rn3.chr4 56199998 5140 + 187371129 I
|
|
e mm7.chr6 29010559 0 + 149646834 C
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e oryCun1.scaffold_203931 90853 1385 - 102346 I
|
|
|
|
a score=52786.000000
|
|
s hg17.chr7 127492512 162 + 158628139 AAAAAGCTTAAA---------ACATACCTA----TCAAA-GGTTAGACTCCTTATTAGTATTCCGCTTAATCTTAATTTGTTCAACAAA-----CCATTCTGAGTT--CAAATAGAGGTCCAAATCAACTGTATAAAAGATAACTTTGAGATGA-GGA---AAATTTAAATGGGGGCTCTGTtttct
|
|
s panTro1.chr6 129906737 162 + 161576975 AAAAAGCTTAAA---------ACATACCTA----TCAAA-TGTTAGACTCCTTATTAGTATTCCGCTTAATCTTAATTTGTTCAACAAA-----CCATTCTGAGTT--CAAATAGAGGTCCAAATCAACTGTATAAAAGATAACTTTGAGATGA-GGA---AAATTTAAATGTGGGCTCTGTtttct
|
|
i panTro1.chr6 C 0 C 0
|
|
s mm7.chr6 29010559 151 + 149646834 AGAAGACTGAAT---------GCAGAGCT-------------TCAGCTTCGTTTGCAG-ATTCTATTTACTCTTCCTTTCTGTAACAAA-----GCTCTCTGAATTCCCAGATATTCATCCAAGTCAGCCT--CAGAAGGCAACTTCAAGATGA-G-----AAATGTGAATATGGACTCCATTTTTT
|
|
i mm7.chr6 C 0 I 115
|
|
s bosTau2.chr4 19333596 168 - 69556449 AAAAACCTGAAG---------ACAGTCCTAGCCGTTAAA---TTAGAATTTTCATTAGAATTCTGGTCACTCTGAATTTGCTCGGCAAA---CTTCTTTTTGAGTTCAAAGATAGAGATCCAAACCAACTG--TGAAAGACTGCTTTGAGGCAATGGACAGAAATCTGACTGTGGATTCTGTTTT--
|
|
i bosTau2.chr4 I 1 C 0
|
|
s canFam2.chr14 52867243 165 - 63938239 AAAATCCTGAAAGCTTCTCACACAGTCCTAATCATTAAA-GGTTAAA------CTTAAAATTCTGCTCACTCTTAATTTGCTCAGCAAATCTCTTCCTTTTTAGTTCAAAGATATAAGCCCAAACCAACTG--TAAAAGATGGTGTTGAGACAG-AGATGGAAATCTGAGTATGG------------
|
|
i canFam2.chr14 I 1 C 0
|
|
s loxAfr1.scaffold_2979 38194 153 - 113413 GGAAACCTACAG---------ACAATGTCAATCTTTAAAATGTTAAACTTTCTATTGGAAGT----------TTCGTTCTCTCAGCAAACCCCTTCTTTTTCAATTCAAAGATATAGACCCAAACCAATTC--TAAAATACAACATTGAGACAA-TGAAgaaaatctgaatatgg------------
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e echTel1.scaffold_281576 4202 4946 + 53044 I
|
|
e rn3.chr4 56199998 5140 + 187371129 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e oryCun1.scaffold_203931 90853 1385 - 102346 I
|
|
|
|
a score=6385.000000
|
|
s hg17.chr7 127492674 116 + 158628139 ttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctAACTTTTTTgccagtgacacaacctcagaagttcctgagaacatgtgtccCA
|
|
s panTro1.chr6 129906899 87 + 161576975 ttctttctttctt-----------------------------ctttctttctttctttctttTAAACTTTTTTgccagtgacacaacctcagaaggtcctgagaacatgtgtccca
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e echTel1.scaffold_281576 4202 4946 + 53044 I
|
|
e loxAfr1.scaffold_2979 38347 0 - 113413 C
|
|
e canFam2.chr14 52867408 0 - 63938239 C
|
|
e rn3.chr4 56199998 5140 + 187371129 I
|
|
e mm7.chr6 29010710 115 + 149646834 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e bosTau2.chr4 19333764 0 - 69556449 C
|
|
e oryCun1.scaffold_203931 90853 1385 - 102346 I
|
|
|
|
a score=17079.000000
|
|
s hg17.chr7 127492790 37 + 158628139 ATTCCatttcagatgctgataagaaattctagttaat
|
|
s panTro1.chr6 129906986 37 + 161576975 aTTCCATTTCAGATGCTGATAAGAAATTCTAGTTAAT
|
|
i panTro1.chr6 C 0 C 0
|
|
s canFam2.chr14 52867408 36 - 63938239 ATTCCATGTTAAATGATGA-AAGGAAATATTACTAAT
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19333764 27 - 69556449 ----------AGATGATGACAAGGAATTCTTATTAAT
|
|
i bosTau2.chr4 C 0 C 0
|
|
s loxAfr1.scaffold_2979 38347 37 - 113413 attccatattagatgatgataatgaattattgttgat
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e echTel1.scaffold_281576 4202 4946 + 53044 I
|
|
e rn3.chr4 56199998 5140 + 187371129 I
|
|
e mm7.chr6 29010710 115 + 149646834 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e oryCun1.scaffold_203931 90853 1385 - 102346 I
|
|
|
|
a score=783.000000
|
|
s hg17.chr7 127492827 34 + 158628139 tttactaggtataatgatggcatggtggtgtagt
|
|
s panTro1.chr6 129907023 34 + 161576975 TTTACTAGGTATAATGATGGCATGGTGGTGTAGT
|
|
i panTro1.chr6 C 0 C 0
|
|
s rn3.chr4 56205138 33 + 187371129 TCCATTAGAGGTGATGATAGCATGGTGATGT-GT
|
|
i rn3.chr4 I 5140 C 0
|
|
s mm7.chr6 29010825 26 + 149646834 ------AGGGGTGATGACAGAAT-GTGGTGT-GA
|
|
i mm7.chr6 I 115 C 0
|
|
s canFam2.chr14 52867444 22 - 63938239 TGTATTGGC----ATGGTG-----Gttaatt---
|
|
i canFam2.chr14 C 0 I 559
|
|
s bosTau2.chr4 19333791 31 - 69556449 TTTCTTAGCTCTGATGATGGCAGAGCTAagt---
|
|
i bosTau2.chr4 C 0 I 19
|
|
s loxAfr1.scaffold_2979 38384 30 - 113413 tttatgtgtgatgttggcagaatagtgaat----
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e echTel1.scaffold_281576 4202 4946 + 53044 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e oryCun1.scaffold_203931 90853 1385 - 102346 I
|
|
|
|
a score=53650.000000
|
|
s hg17.chr7 127492861 78 + 158628139 tattcttc---------------agtgcttccttatgcattcgtgatagatgcaaacaga---agtttagggtgaaatagcacaatgcctgggatt
|
|
s panTro1.chr6 129907057 78 + 161576975 TATTCTTC---------------AGTGCTTCCTTATGCATTCGTGATAGATGCAAACAGA---AGTTTAGGGTGAAATAGCACAATGCCTGGGATT
|
|
i panTro1.chr6 C 0 C 0
|
|
s rn3.chr4 56205171 77 + 187371129 AATCTTCA---------------AGCGCTGCCTTACGTATTAGCAATC----CAAACTGAAGCAGGTTAGGCTGAACTGGCATGAAGTCTAGGGTT
|
|
i rn3.chr4 C 0 I 473
|
|
s mm7.chr6 29010851 77 + 149646834 GATCTTCA---------------AGTGCTGCCTTACATGTTAGCAATC----CAGACTGACGCAGGTTAGGTTGAATTGGCATGAAGTCTAGAGCt
|
|
i mm7.chr6 C 0 I 474
|
|
s bosTau2.chr4 19333841 92 - 69556449 ttttcttattcattagaAataagaaagttttcttattcattagagagt----caaactgaagtagtttaaggtgaaatacagtgatacctgggatt
|
|
i bosTau2.chr4 I 19 C 0
|
|
s canFam2.chr14 52868025 74 - 63938239 tattttta---------------aatgcttccttatttgttagaaatt----cacactgaagtcatttaggataaaatgcaatgatgtctggg---
|
|
i canFam2.chr14 I 559 C 0
|
|
s loxAfr1.scaffold_2979 38414 77 - 113413 tatttgta---------------aacacttcctgatttgttagaggta----caaacggaagaattttacggtgaaatggcatgatgtctgggatt
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e echTel1.scaffold_281576 4202 4946 + 53044 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e oryCun1.scaffold_203931 90853 1385 - 102346 I
|
|
|
|
a score=-9341.000000
|
|
s hg17.chr7 127492939 92 + 158628139 aaccttaaaaaacttcagCAAAACAATTTA-----TCTTATAATTTTTtataaatat-------tatataaactttatataaata---------------------------------------------------------------actatatatctatatatat
|
|
s panTro1.chr6 129907135 97 + 161576975 AACCTTAAAAAACTTCAGCAAAACaatttaatatatcttataattttttataaatat-------tatataaaCTTtatatatata---------------------------------------------------------------actatatatctatatatat
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19333933 161 - 69556449 tattttaaaatacttcaggaaga-aATATA-----TCCTTTTATTTATtatgtatatatatacatatgtaagtgtaatatgtatatacatatacatGAAGTTAAATAAGCAAGATGTATCATAatatattatctacatacatatgtatggtatgtatatatatacat
|
|
i bosTau2.chr4 C 0 I 8
|
|
s canFam2.chr14 52868099 21 - 63938239 ---------atatttcagaaaaa-aatat----------------------------------------------------------------------------------------------------------------------------------------at
|
|
i canFam2.chr14 C 0 I 8
|
|
s loxAfr1.scaffold_2979 38491 43 - 113413 -cacttaaaatacttcagccaaaaaataaaaga-------------------------------tgcgaaaggtt--------------------------------------------------------------------------------------------
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e echTel1.scaffold_281576 4202 4946 + 53044 I
|
|
e rn3.chr4 56205248 473 + 187371129 I
|
|
e mm7.chr6 29010928 474 + 149646834 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e oryCun1.scaffold_203931 90853 1385 - 102346 I
|
|
|
|
a score=18866.000000
|
|
s hg17.chr7 127493031 74 + 158628139 atatCaacaagatcagcaaaatgttgagaattgctaaagctaagt---------------------------------------------------------gacagataca-----------------tgggagtccattataccag
|
|
s panTro1.chr6 129907232 72 + 161576975 at--Caacaagatcagcaaaatgttgagaattgctaaagctaagt---------------------------------------------------------gacagataca-----------------tgggagtccattataccag
|
|
i panTro1.chr6 C 0 C 0
|
|
s mm7.chr6 29011402 61 + 149646834 -----AACAAGATCAGCGCAGTGCTGGCATCTGTTAAGGCTCAGT---------------------------------------------------------TACAGATACA-----------------TGG------AGTATAAA--
|
|
i mm7.chr6 I 474 C 0
|
|
s rn3.chr4 56205721 41 + 187371129 AGATGAACAAGATCAGCACAATGCCGGCATCTGTTAAAGCT-----------------------------------------------------------------------------------------------------------
|
|
i rn3.chr4 I 473 C 0
|
|
s bosTau2.chr4 19334102 74 - 69556449 GAATAAATAAGATCAGCACAATGTTGTTCATTGTTAAAGCTGGGT---------------------------------------------------------GGTATGTACA-----------------TAAGAGTTCGTTTTACCAG
|
|
i bosTau2.chr4 I 8 C 0
|
|
s canFam2.chr14 52868128 148 - 63938239 agacaaataaggtcaataaaatgttgataattgttaaaATtgggtccgcctcccaaatacaccccctgcaccagaatccttgtctccggtgctgctcctggaggaatccagagcaagacaACTGCAAAGCAAGAGTTTGTTATAGCAA
|
|
i canFam2.chr14 I 8 C 0
|
|
s loxAfr1.scaffold_2979 38534 74 - 113413 agataaaccagagcagcaaactgttgataaatgtgagagccgggc---------------------------------------------------------aatgggaaca-----------------caagagctcattatacgag
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e echTel1.scaffold_281576 4202 4946 + 53044 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e oryCun1.scaffold_203931 90853 1385 - 102346 I
|
|
|
|
a score=35467.000000
|
|
s hg17.chr7 127493105 88 + 158628139 accctttccttttgggtgaaatttCCAGAAGAAACACTTTTTGGAAATGTCCAGTTCAG-CCTGGCCCGTCCCCTGCCTGGG-------CAATGTT-
|
|
s panTro1.chr6 129907304 88 + 161576975 accctttccttttgggtgaaatttCCAGAAGAAACACTTTTTGGAAATGTCCAGTTCAG-CCTGGCCCGTCCCCTGCCTGGG-------CAATGTT-
|
|
i panTro1.chr6 C 0 C 0
|
|
s rn3.chr4 56205762 63 + 187371129 ---CTGTGTTTTCGGGTAAAACTCGCAG-ATAAACA--CTTCAGAGGTTTCTGGCTG---CCTGA------------------------GCATCCT-
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29011463 67 + 149646834 AGGCTGTGCTTTCGGGTAAAACTCTCAG-ATAAACAT-TTTCTGAGGTTTCTGGCTG---CCTGA------------------------GCATCCT-
|
|
i mm7.chr6 C 0 C 0
|
|
s oryCun1.scaffold_203931 92238 95 - 102346 ACCCTCTACTTTTGGGTAAATTTTCCAGAATAAACAC-TTTGGGGAAGATGTGGCTGAGCCCAGACCCCCCCCCCACACACACACACACACATTCT-
|
|
i oryCun1.scaffold_203931 I 1385 C 0
|
|
s bosTau2.chr4 19334176 86 - 69556449 GTCCTCTACTTTGGGGTAAAACTTCCAGAATAAATATTTGCAGGGGAAGGGTCACTCAG-CCCAGCCCCTCCACTGCCTGG--------GCATC-T-
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52868276 87 - 63938239 GCCCTCTACTTTGGGGCAGAATTTGGAGAAGAAGCACTTCGGGGTGAGGTGCCATCCAG-CCCAGCCCCTCCACTGCCTGG--------GTGTTGT-
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 38608 86 - 113413 -ccctctacttGGGGGGAAAATTTTCACATTAAGCAT-TTTCAGGGAAGCAGGGTTGGG-CCTACCCCCTTCACTGCCTGG--------GCGTCCCT
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e echTel1.scaffold_281576 4202 4946 + 53044 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=21114.000000
|
|
s hg17.chr7 127493193 51 + 158628139 GCATTC------CTGGGAAGGAAGGAGAG--GAGGTGGGGAGAGAAGAGGGAGAAGGAG
|
|
s echTel1.scaffold_281576 9148 42 + 53044 GCACCC------TTGAGCAGGAAGGAGAA----AGGGGAAGGTGGTGAGAGA-------
|
|
i echTel1.scaffold_281576 I 4946 C 0
|
|
s loxAfr1.scaffold_2979 38694 44 - 113413 --ATCC------TTGGGAAGGAAGGAGGC----GGCGGAGGGAAGCGGGAGAG---GAG
|
|
i loxAfr1.scaffold_2979 C 0 C 0
|
|
s canFam2.chr14 52868363 52 - 63938239 GTGTTCTGGGGATTG-GAGGGGAGGGGGG----GTTGCAGGGAAGAGGAAGGG--GGCT
|
|
i canFam2.chr14 C 0 C 0
|
|
s bosTau2.chr4 19334262 46 - 69556449 GCATTC------TTG-GAAGGAAGGAGGT----GATGTAGGGAGGAGGGAGAG--TGAG
|
|
i bosTau2.chr4 C 0 C 0
|
|
s oryCun1.scaffold_203931 92333 35 - 102346 GCATCC------TGG------------------GAAAGAGGGAGGAGGAGTGATATGGG
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s mm7.chr6 29011530 48 + 149646834 GCATCC------CAGAGAAGGATAGCGA-----GAACGGGGGAGGGTGAAGACAATGAG
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56205825 49 + 187371129 GCATCC------CAGAGAAGGATAGTGGC----GACTGGGGGAGGGTGAAGACAATGAG
|
|
i rn3.chr4 C 0 C 0
|
|
s panTro1.chr6 129907392 53 + 161576975 GCATTC------CTgggaaggaaagagagaggaggtggggagagaagagggagaaggag
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30307355 8316 - 46578359 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=374974.000000
|
|
s hg17.chr7 127493244 384 + 158628139 AATATGACGTGGAGCTG-AGCTGTATTTAAAGAGCACATTTGATTTCACTGCCTGGCAGATGTCCCAGGGCCTT-----GGGGGG----------ACAGCAGACTGTCAGTGCGGGTGTGAAACAGTGAACTAAGACAGGGATTTAGCAAATCAAACAAGGAAGGA---------ATGG-TAAGAACCAGCTGCAAGGGGCAGGGAGAGGCATGTCCTGAAGCT---CACAGGAAAAAGCCAAAG--CAGCAGACATCAGGGCCTCAAG-----------CTCTGCCCCAGTCCTGCTGGGCCTCA-GGTGTCCCA-CAGAAG----CCAA---------------CTCCCCCCACC-----------------------CAAGGGGGCATCGTGGTATTCCTGCTGTGCAGCTGTTCCTCCATATTAA--ATAACACTGT-GTAGGCAGAGAAGCCTTTAGACCATTtgtaa
|
|
s panTro1.chr6 129907445 384 + 161576975 aATGTGACGTGGAGCTG-AGCTGTATTTAAAGAGCACATTTGATTTCACTGCCTGGCAGATGTCCCAGGGCCTT-----GGGGGG----------ACGGCAGACTGTCAGTGCGGGTGTGTAACAGTGAACTAAGACAGGGATTTAGCAAATCAAACAAGGAAGGA---------ATGG-TAAGAACCAGCTGCAAGGGGCAGGGAGAGGCAAGTCCTGAAGCT---CACAGGAAAAAGCCAAAG--CAGCAGACATCAGGGCCTCAAG-----------CTCTGCCCCAGTCCTGCTGGGCCTCA-GGTGTCCCA-CAGAAG----CCAA---------------CTCCCCCCACC-----------------------CAAGGGGGCATCGTGGTATTCCTGCTGTGCAGCTGTCCCTCCATATTAA--ATAACACTGT-GTAGGCAGAGAAGCCTTTAGACCATTtgtaa
|
|
i panTro1.chr6 C 0 C 0
|
|
s rn3.chr4 56205874 379 + 187371129 GGTATGATGAGGGTCTGAAGCTGAATTTAACT-TT-CCTTTGATTTCGCTGCCTGGCAGATGTCCCAGGGCGTTGGGGGGGGGGG----------GGAGCAGGCTGTCAGAGTGGGTGTGAAACAGTGAACCAAAACAGAGATTTAGCAAATCAAAGAAGGAGAGA---------ATGG-GAAGAGCCAGCTGTGAGATGC-TGTGGAGGGGAAGCCTGAAGCT---CCCAGGGAAAG-TCAGAG--GAGCAGCCAGCAGGGCCTCAAG-----------CTCTGCCTCGAGCCTACTGTG-GCTA-CTTA--CAA-CAGAAG----CCAT---------------CTCTCCTGCCCAACGGGATCGTGAACGGGGATCGTGAACGGGGATCGTGAAGCGACCACTTGGCGGCCATCCCATCATATTAA--A-A---CCAT-ACAGGAAG-----------------------
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29011578 354 + 149646834 GATATGATGAGGATCTG-AGCTGTATTTAACT-TCACATTTGATTTCACTGCCTGGCAGATGTCCCAGGGCCTT---AAGGGGGG----------ACAGCAGGCTGTCAGAGTGGGTGTGAAACAGTGAACCAAAACAGAGATTTAGCAAATCAAACAAGGAGAGA---------GCAG-GGAGAGCCAGCTGTGAGATGC-TGCAGAGGGGAGGCCTGAAGCT---CCCAGGGAAAA---AGAG--CAGCAGCCAGCCTGGCCTCAAG-----------CTCTGCCTCAAGCGTACTGTGTGCTG-GGTG-CCAA-TGGAAG----CCAA---------------CTCCCCC---------------------------TG---------TGTGAAGTGACCACTTGGTGGCCATCCTATGATATTAA--A----------ACAGGAAGAGAAACCCACAAACCATTT----
|
|
i mm7.chr6 C 0 I 51
|
|
s oryCun1.scaffold_203931 92368 349 - 102346 GAACTGAGGGGGAACTG-AGCTGGGTTCAGCT-TCACGTTGAATTCCACTGCTTGGAGCATGTCCCCAGGCG--GGGGGTGGGGG----------GGTGCAGGCCATCAGCGTGAGTGTGCCACAGTGAGCTGCCACAGCGATTTAGCAAATCAAACAAGGAG-------------TGG-CAGGAGCTGGCTGCAAGATGC-CGGAGAGGCACATCCCAACACT---CGTAGGAA------CGAG--CCAGGGTCATCAGAGCCTGGAG-----------ATCAGGCCCCTCCCTGCTGGG-CTTC-CGAG-CCCG-CGGGAGCCGCCCAG---------------CCCTCCC---------------------------CAAGGAGGACTCGTGGTGTGC-------GCAGTCACCCT-CCGTATAAA--C-AACCCCGT-GCAGAAGC------CCTCGGAC---------
|
|
i oryCun1.scaffold_203931 C 0 I 57
|
|
s bosTau2.chr4 19334308 387 - 69556449 GATGCCACGTGGAGCCG-AGCTGCATTTCACA-TCACAGTTGATGTCACCACTTGGCAGATGTCCCAGGGCATG-----GGGGGA----------ATGGTAGACTGTCAAAGCAGGTGTGAAACACTGAACTAAAACAGACATTTAGCAAATCAAACAAGGAGAAA---------GTGGTTAAGAACCAGCTG-AAGACAC-TGGCAAGGCAAGTTCTGATGCTGGCTAAAAAAAAGAA--AAAA--GAGCAGAAATCAGAGCTGTGAG-----------CTCTACCCCCTCCTTGCTGGGTCCCAGGGTGCCCAA--GGAAG----CCGTGAGCCTTCC------TTCCCCTCCCC-----------------------CA--GGGAAATCATGGTCCTCCCTCTGTTCAGTTACTCCTCCATATTAA--A-CATTCTAT-ATAGATAG--AAACCCTCAGCCCATTTGTGA
|
|
i bosTau2.chr4 C 0 I 337
|
|
s canFam2.chr14 52868415 400 - 63938239 AACATGATGTGGAGCCC-AGTT-TATTTAACT-TCACATTTGATTTCACTGCCTGGCAGATGTCCCAGGGCCTA-----AGGGGAGGGGGCGGGGGTGACAGCCTGCCAGAATGGGTGTGAAACAGTGAACTGAAACAGAGATTTGACAAATCAAACAAGGAGACA---------GTGG-TAAGAGCCAGCTGCGAGATAC-TAGAAAGTCAAGTCCTGATGCT---TAGAAGAAAAAACCAAAG--GAGTGGAAATGAGAGTGCTGGA-----------CGTTGCCCTAGCCCTGCTGGGCCTTGGGGTGCCCCA-TGGAAA----CCATGGAACTCCC------CTTCTCCTTCC-----------------------CAAGGGGGAATCGTGGTGTCCCCACTCCAAGGCTATCCCTCCATATTAAATA-CACTCCAT-ACAGTGAA--AAGCCCTGGGACCGTTTGTGA
|
|
i canFam2.chr14 C 0 I 91
|
|
s loxAfr1.scaffold_2979 38738 392 - 113413 ACAAAGATGTGGAGCTG-AGATGTATTTAACT-TCACGTTTGATTTCACTGTCTGGCAGATGTCCCAGGGCCTT-----GGGGGG----------ACAGCCGACTGTTGATGTGGGTGTGAAACAATGAATTAAAACAGAGACTTAACAGATTAAACGCGGGGAGC---------GCGG-CACTAGCCAGCTACAAGATGC--AGGGAGGCGAGTCCTGAGGCT---CCCAGG-AAAAGCCCAAG--GAGCAGAAACCAGGGCTCCCAG-----------CTCTGTCCC-TCTCTGATAAGCCCCA-AGGGGCTGATTGGACA----CCAACTCCCCCCCACCCCTCACCTCCTCCC-----------------------CAGGGGGCCCTGGTGGTGCTGCGGCTTTGCAGCTGTCCCCCC--AGTAG--A-TAGACGGT-GGAGGGAGAGAAGCTCTGGGACCATTTTTGA
|
|
i loxAfr1.scaffold_2979 C 0 I 308
|
|
s echTel1.scaffold_281576 9190 323 + 53044 ----------GGAGCTG-AGTTGTATTTGACT-TTGAATTGGATTTCGTTGCCTGGCAGATGTCCCAGGGCCTT-----GGGGAG----------ACCGCAGACTGTTGGTTTGGATGTGAAATGGTGAATTAAAACCACGACTTAGCAGATCAAACAAGAAACGA---------GTGG-CAGGAGCCATCGGCA---------------CGTGTCCT-----------------AAAGCCCAAG--GAGCGTCAACC------CCTGG-----------CTCAGCCCT-TCTCTGCTGAGCCCCA-AGGGACCAAGTGGATG----CCAACACCCC---------TGCCCCTGCCC-----------------------CAGGGG--CCTGGTAACGCTGTGGCTTGGCAGC--CTCCTGC--ACTAG--A-CAGACAGA-GGAGGGAGTGACGCCCT--------------
|
|
i echTel1.scaffold_281576 C 0 I 609
|
|
s monDom2.scaffold_22 30315671 375 - 46578359 AAAATGATGTTTAGCTG-ACTTGTATTTAACT-TCACATTTGATTATGCTGCCTGGCAGATGTCCCAGGGCCTT-----CAGGGG----------ATGACAGACTGTTGGTGTGGGTGTGAAACAGTGAACTAAAACAGAGATTTAGCAAATCAAACAAGGAGAGACAGACAGGCCTGG-GAAGAGCTAGG---GAGAGAC-----AAGGCTGTCCCCATCTCT---GTCACCAGGAGACCTGGGTCTCACAGCTGTCCATGCAATGAGGAGGGAAATACCTCAGCCTCCAAGAATTTGGA-CTGG-CGTGTCCAT------G----TCATTA-------------CTGCTCTGTCC-----------------------------------------CTGCTGTTTGGCGGATAGCCTTTCCTGTTAC--T-AATAGTTTAATAGTGAGAAAAGCCTTCAGGCCATCTCTAA
|
|
i monDom2.scaffold_22 I 8316 I 3155
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=30095.000000
|
|
s hg17.chr7 127493628 319 + 158628139 ccacgcaatgggttcaccttgcctgctgcgtagacagaaccgatttatcaagacaggggaattccaataaagagtaatgcatgcagagcaggctgtgcaggagacggtagttttactattactctaatcagtctccccagagcagggggttttaaagataattttgcgggtaagggcttgggaagtggggagtgctgattggtcaggttggggatagaatcacacccggtcaagttaggttttcttaatgtcttctgttcctgggtgcgatggcagaactggttgggccagattactgctctgggtggggtcagcttat
|
|
s panTro1.chr6 129907829 319 + 161576975 ccacgcaatgggttcaccttgcctgctgcgtagacagaaccgatttatcaagacaggggaattccaataaagagtaacgcatgcagagcaggctgtgcaggagacggtagttttactattactctaatcagtctccccagagcagggggttttaaagataattttgccggtaagggcttgggaagtggggagtgctgattggtcaggttggggatagaatcacacccggtcaagttaggttttcttaatgtcttctgttcctgggtgcgatggcagaactggttgggccagattactgctctgggtggggtcagcttat
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30316046 3155 - 46578359 I
|
|
e echTel1.scaffold_281576 9513 609 + 53044 I
|
|
e loxAfr1.scaffold_2979 39130 308 - 113413 I
|
|
e canFam2.chr14 52868815 91 - 63938239 I
|
|
e rn3.chr4 56206253 0 + 187371129 C
|
|
e mm7.chr6 29011932 51 + 149646834 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e bosTau2.chr4 19334695 337 - 69556449 I
|
|
e oryCun1.scaffold_203931 92717 57 - 102346 I
|
|
|
|
a score=11498.000000
|
|
s hg17.chr7 127493947 145 + 158628139 ccatggagtgtaggctctgcaaaatatctcaagcactgatcttagattttacaacagtgctgtttacccccaggag-------caatttggggaggttcagactcttggagccaggagctgcatgacccctaaattgtaattAATTATGCAT
|
|
s panTro1.chr6 129908148 132 + 161576975 ccatggagtgtaggctctgcaaaatatctcaagcactgatcttagattttacaacagtgctgtt-acccccaggag-------caatctggggaggttcagactcttggagccaggagctgcatgacccctaaattgtaa------------
|
|
i panTro1.chr6 C 0 C 0
|
|
s bosTau2.chr4 19335032 121 - 69556449 ccatggactgtacagtctgtggaattctccaggccagaatactgaagtgggtagcccttccctt---ctccaggggatcttcccaacccaggga---tcaaacc-----------------caggtctcccacattgcaggtag--------
|
|
i bosTau2.chr4 I 337 I 36
|
|
e monDom2.scaffold_22 30316046 3155 - 46578359 I
|
|
e echTel1.scaffold_281576 9513 609 + 53044 I
|
|
e loxAfr1.scaffold_2979 39130 308 - 113413 I
|
|
e canFam2.chr14 52868815 91 - 63938239 I
|
|
e rn3.chr4 56206253 0 + 187371129 C
|
|
e mm7.chr6 29011932 51 + 149646834 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e oryCun1.scaffold_203931 92717 57 - 102346 I
|
|
|
|
a score=968.000000
|
|
s hg17.chr7 127494092 41 + 158628139 GACCCCTAAATTGTAATTTACCCAGGAGCTACATGACCCCT
|
|
s rn3.chr4 56206253 34 + 187371129 GACTCCTGTCTCCTGCTCCACTTAG-------ATCACTGTG
|
|
i rn3.chr4 C 0 C 0
|
|
s panTro1.chr6 129908280 25 + 161576975 ----------------tttACCCAGGAGCTACATGACCCCT
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30316046 3155 - 46578359 I
|
|
e echTel1.scaffold_281576 9513 609 + 53044 I
|
|
e loxAfr1.scaffold_2979 39130 308 - 113413 I
|
|
e canFam2.chr14 52868815 91 - 63938239 I
|
|
e mm7.chr6 29011932 51 + 149646834 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e bosTau2.chr4 19335153 36 - 69556449 I
|
|
e oryCun1.scaffold_203931 92717 57 - 102346 I
|
|
|
|
a score=-7247.000000
|
|
s hg17.chr7 127494133 53 + 158628139 AAATTGTACATTGTAAGCCTCAGAAACGAGGCTCCTATTTCTCCCTTCACAAC--
|
|
s panTro1.chr6 129908305 53 + 161576975 AAATTGTACATTGTAAGCCTCAGAAACGAGGCTCCTATTTCTCCCTTCACAAC--
|
|
i panTro1.chr6 C 0 C 0
|
|
s rn3.chr4 56206287 26 + 187371129 GAATA----------------AGATACTT-----------AGCTCTTTTTAGA--
|
|
i rn3.chr4 C 0 C 0
|
|
s bosTau2.chr4 19335189 40 - 69556449 AGATTCTTCATCCCAACCTTCAGAACCTT-----------GTCCCT----AGGGC
|
|
i bosTau2.chr4 I 36 I 1
|
|
s oryCun1.scaffold_203931 92774 24 - 102346 -----------------------------GGCACCTTCTCCTCCCTTTCAAGA--
|
|
i oryCun1.scaffold_203931 I 57 C 0
|
|
s mm7.chr6 29011983 21 + 149646834 ---------------------AGACACTT-----------TGCTCTTTTTAGA--
|
|
i mm7.chr6 I 51 C 0
|
|
e monDom2.scaffold_22 30316046 3155 - 46578359 I
|
|
e echTel1.scaffold_281576 9513 609 + 53044 I
|
|
e loxAfr1.scaffold_2979 39130 308 - 113413 I
|
|
e canFam2.chr14 52868815 91 - 63938239 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=-3744.000000
|
|
s hg17.chr7 127494186 59 + 158628139 CTTGATCCA----------GCAGCAGCCTGTGGCCGGCTCA-TCCCAT-------CTCTTCCCTTGCTTACTTA--GAC
|
|
s canFam2.chr14 52868906 61 - 63938239 CTGGATCTG----------GCTGCAGCCTGAGGCAGGCTCA-GCCCAT-------TTCTCCACTGGCTTAACACCAGAC
|
|
i canFam2.chr14 I 91 C 0
|
|
s bosTau2.chr4 19335230 54 - 69556449 CTGCATCAG----------GTCACAGCCC-AGGGAGGTTCA---TCAC-------TTTTACTTTGGATCTGTGC----T
|
|
i bosTau2.chr4 I 1 C 0
|
|
s oryCun1.scaffold_203931 92798 50 - 102346 CCTTGTGCATGGGACTGTGGCTGCAGTCTTG-----------TCCCATGTCGCCCCTCCCA------------------
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s rn3.chr4 56206313 77 + 187371129 CTTTACCCATAGTGAGACGGATGAAACCTGGGATAGGCTCCTCTCCATCCCCCTCCCCCCATCTTGTGTACTTT--AGC
|
|
i rn3.chr4 C 0 C 0
|
|
s mm7.chr6 29012004 70 + 149646834 CCTTACCCACTGTGATGTGGCTGAAGCCTGGAATAGGCTCCTCCCCAT-------CCCCCATCTTGTGAGCTTT--AGC
|
|
i mm7.chr6 C 0 C 0
|
|
s panTro1.chr6 129908358 59 + 161576975 CTTGATCCA----------GCAGCAGCCTGTGGCCGGCTCA-TCCCAT-------CTCTTCCCTTGCTTACTTA--GAC
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30316046 3155 - 46578359 I
|
|
e echTel1.scaffold_281576 9513 609 + 53044 I
|
|
e loxAfr1.scaffold_2979 39130 308 - 113413 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=-23139.000000
|
|
s hg17.chr7 127494245 110 + 158628139 CCCTTCCAGGGCCAGGGGCAGGTCACTACTCACAT---------------------CCT--ACCCCACCCACCCCAGACAGAATCCTCCTGAG---TCCAGGA-----GATTCCAAGAGTGC--------------AGAAGGAACCACCAAGGGG
|
|
s panTro1.chr6 129908417 110 + 161576975 CCCTTCCAGGGCCAGGGGCAGGTCACTACTCACAT---------------------CCT--ACCCCACCCTCCCCAGACAGAATCCTCCTGAG---TCCAGGA-----GATTCCGACAGTGC--------------AGAAGGAAACACCAAGGGG
|
|
i panTro1.chr6 C 0 C 0
|
|
s mm7.chr6 29012074 86 + 149646834 CCTTTTC--AGCCA--------------------------------------------C--CCTTCATCCGCC-CCGATGGAATTCTCTGGAA---CTCAGGA-----GCAGCCTGTGGAGT------------GGGGCAGGGACTTGAAAAGGG
|
|
i mm7.chr6 C 0 I 786
|
|
s rn3.chr4 56206390 83 + 187371129 CCTTCTCAGAGCCA--------------------------------------------C--CACTAACCCACCTCCAAGGGAACTCTCTGGAA---GTCAGGAGATGCGCAGCCAGTGGGGC------------AGGGCAGGGA-----------
|
|
i rn3.chr4 C 0 C 0
|
|
s oryCun1.scaffold_203931 92848 76 - 102346 --ATGTCCACGCAG--------------------------------------------C--CGTCTGCCCACA-ACTAAGAAAGCCTGCTGAA---TTCAGGA-----AATCCCTACAGGGC---------CCAATGGGAGG-------------
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s bosTau2.chr4 19335284 89 - 69556449 CTGCCCCGGTGTG------------CAGCTCAC-------------------------C--CCCCAATACACA-CCCACACCTTCCATATAAG--CTTCAGGA-----GATTCAGGGAGTGC------------AGAGCGGGGCAGGC-------
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52868967 108 - 63938239 CCCTCCCAGTGCAG-GAGCAAATCCCTGTTCAC-------------------------CTGCACCCAGCCACC-TGCACACCGTCTACACAAG--CTTCAGGA-----GATCCAGAGAGTGC------------AGAGCCAGGCAAGCCGAGGG-
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 39438 148 - 113413 cTCCCCCAGGGCCAGGAGCAAACCACTATTCACCTCCTACCTCCCTCCCCCGACCCCCC--CCTCCGCCCGCCCCGCACACACCCTATAGACAAGCTCCAGGA-----AGTTCGGTGCATGCAGGATTGAACTGGGAGGGAGGCAGGCCAAGAGA
|
|
i loxAfr1.scaffold_2979 I 308 C 0
|
|
e monDom2.scaffold_22 30316046 3155 - 46578359 I
|
|
e echTel1.scaffold_281576 9513 609 + 53044 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=-30365.000000
|
|
s hg17.chr7 127494355 133 + 158628139 CCTGCCTGTTCAGA----GGCCTGC-------------------CA-GCGTTCCCTCTGGGGTTTCCCTTCAGCCAGCCTAAA-CTGGGCCCT-----------------------CCAGCGCCGGAGGCTTCCAGACA-------------AAGAC--------GGACCCTCCC-----------TGCAGAAGGTTGGTGTTCCATCTG-----GGG
|
|
s panTro1.chr6 129908527 129 + 161576975 CCTG----TTCAGA----GGCCTGC-------------------CA-GCGTTTCCTCTGGGGTTTCCCTTCAGCCAGCCTAAA-CTGGGCCCT-----------------------CCAGCGCCGGAGGCTTCCAGACA-------------AAGAC--------GGACCCTCCC-----------TGCAGAAGGTTGGTGTTCCATCTG-----GGG
|
|
i panTro1.chr6 C 0 C 0
|
|
s rn3.chr4 56206473 93 + 187371129 ---------CCTGAAGAGGGTGCAT-------------------GAGGCATCCATCTTTGTGCTTCCC----------------CTTGGTACT--------------------------------------------GA-------------CAGGT--------GGTCCGTCCC-----------TTACTAAAGCTAGTGAACCATCTC-----AGT
|
|
i rn3.chr4 C 0 C 0
|
|
s oryCun1.scaffold_203931 92924 109 - 102346 ------TGACCCGA----GGCGTGG-------------------GAAGTGCCCTCCTCCGGGCTTCCCCCCAGCCAGTGCAAG-CTGGGCCCT--------------------------------------------GA-------------ACAGT--------GAGGCCTGCT-----------GCACCACAGT---GGAGCCTTCTCGTCCAAGA
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s bosTau2.chr4 19335373 206 - 69556449 ----CCTGTTTGGAA---GGTGTGTTTCCTGACGTCCTTGGGCCGAAGCCAGGCCCTGGGTACTCAGGGCTGCCAAACCTCAGGCAGGGCCTTCCTGTTGAAGACCAGCATTTCATCCCAGGCAGAGGGCCTCCAGAAATATCACAGGTCAGAAAACCAATCCTGGggacttccctggtggcccagtagctaagactacattcccactgc-----agg
|
|
i bosTau2.chr4 C 0 C 0
|
|
s canFam2.chr14 52869075 119 - 63938239 ---ACCGACTCAGAA---GGCGAGG-------------------GAGGCCTCCCCCT---------------CTGGGCCTAAGCCAGAGCCCT------------GGGCAATGAATGCTGTG----GAACCCCCAGACA--------------------------GGGCCTTCCC------------GTCAAAGGCCAGTGTTTCATTTC-----AGG
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 39586 121 - 113413 ----CCCGCTCAGAA---GGCACAA-------------------GA-GCTCCCACCTTTGGGCT--------CTCAGTTCAAG-CCAGGCCCC-----------------------AGAGCGCTGAATGCTGTTGAACA-------------TAGAC--------AGGGACTTCC-----------TGTCTAAGGCCAGT-TCTCATCTC-----AGG
|
|
i loxAfr1.scaffold_2979 C 0 I 689
|
|
e monDom2.scaffold_22 30316046 3155 - 46578359 I
|
|
e echTel1.scaffold_281576 9513 609 + 53044 I
|
|
e mm7.chr6 29012160 786 + 149646834 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=-12379.000000
|
|
s hg17.chr7 127494488 65 + 158628139 AAAA--TGTC---------CCCAG------------------------TCACACCTCA-------------------------------------------GAAA--------------AGCACCCCTG---------------------CCC---CACCCTTTTCA-TGCCTTAATTTCTG-
|
|
s panTro1.chr6 129908656 65 + 161576975 AAAA--TGTC---------CCCAG------------------------TCACACCCCA-------------------------------------------GAAA--------------AGCACCCCTG---------------------CCC---CACCCTTTTCA-TGCCTTAATTTCTG-
|
|
i panTro1.chr6 C 0 C 0
|
|
s rn3.chr4 56206566 46 + 187371129 GACA--CGAC---------CCCAG--------------AAAATA----TCACCAATCA-------------------------------------------GAAA--------------ACCTCCCCTC---------------------TCC------------------------------
|
|
i rn3.chr4 C 0 I 559
|
|
s oryCun1.scaffold_203931 93033 88 - 102346 CACA--TGTTTGCTCATCACCCAGCATCCCT-------AGCGTC----TCACGGGTCA-------------------------------------------GAAG--------------ACCCCTCCTT---------------------GGTGGCCGTCACTTT---TGCCTCAACTCCTG-
|
|
i oryCun1.scaffold_203931 C 0 I 1
|
|
s bosTau2.chr4 19335579 161 - 69556449 ggggcctggc---------ttcaa--tccctggtcagggaactagaccccacacaccacaactaTTATAAGACCTTGTGCAGTGAAATAAACAAAATAAACGGAAAAAAAGCCACCGCCAACAATTCTGAAGTTG------CCTTGACAGCCC---CACCCTTTTTT-GGCCATAATTCCTG-
|
|
i bosTau2.chr4 C 0 I 1
|
|
s canFam2.chr14 52869194 87 - 63938239 CGGA--TGTC---------CCCAA--------------GGAGTA----TCACAGACCA-------------------------------------------GGAA--------------ACCAACCCTGAAGTTG------CCTCCACCCTCC---TATCCTTTTTTGGGCCATAATTACTG-
|
|
i canFam2.chr14 C 0 I 1
|
|
s loxAfr1.scaffold_2979 40396 93 - 113413 aaaa--tGTC---------CCCAA--------------GAGGTA----TCACGAATCA-------------------------------------------GAAA--------------ACCAACCCTGAAGTTGTGATGACTGACACCCTCC---CCCCACTTTTT-GGCTTTGATTCCCAA
|
|
i loxAfr1.scaffold_2979 I 689 C 0
|
|
e monDom2.scaffold_22 30316046 3155 - 46578359 I
|
|
e echTel1.scaffold_281576 9513 609 + 53044 I
|
|
e mm7.chr6 29012160 786 + 149646834 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=48758.000000
|
|
s hg17.chr7 127494553 81 + 158628139 AGAAACACCAACCCTCACAGCTTCG-CCC--TTTCTGTGTAGAAAATGTGCGCATTTCTCTGAGGGAGAGCT-GTAGGCGC-TGTG
|
|
s panTro1.chr6 129908721 81 + 161576975 AGAAACACCAACCCTCACAGCTTCA-CCC--TTTCTGTGTAGAAAATGTGCGCATTTCTCTGAGGGAGAGCT-GTAGGCGC-TGTG
|
|
i panTro1.chr6 C 0 C 0
|
|
s mm7.chr6 29012946 71 + 149646834 AGGAATTACTGCCCTCAGAGTCT-G-TCC--TTTCTATGTCTAATGTATATGCATTTCTCTGAGG-----------AGAACAAGCC
|
|
i mm7.chr6 I 786 C 0
|
|
s rn3.chr4 56207171 55 + 187371129 -----------CCCTCAGAGT-------C--TTTCTGTGTCTAAAGGGTCTGCATTTCTCTGAGG-----------AGAACAAGTC
|
|
i rn3.chr4 I 559 C 0
|
|
s oryCun1.scaffold_203931 93122 71 - 102346 AGAAATGCAAAGCCTCATAGCTTCG-TCT--TCTCCGGGTATGAATTGTGTGTGTGGACCTTGTA-----------GGCGC-AGCT
|
|
i oryCun1.scaffold_203931 I 1 C 0
|
|
s bosTau2.chr4 19335741 82 - 69556449 GGGAACACCAACCCTCACAGCTTCA-CCT--CTTCTGTGTATAAAATGCATGTATTCGTCTAGGGGAGGCCCAGCAGGTGC-AGCA
|
|
i bosTau2.chr4 I 1 C 0
|
|
s canFam2.chr14 52869282 83 - 63938239 GGAAACACCAACCGTCACAGCTTCATTTT--TTTCTGTTTATAAAATGTGTGTATTTGCCGGACAGAAAACTGGCAGGTGC-AGTG
|
|
i canFam2.chr14 I 1 C 0
|
|
s loxAfr1.scaffold_2979 40489 62 - 113413 GGAAGCACCAACCCTCACAGCTCAA-TCT--TCTCTGTTTAAAAAATGTGTGGATTTATCTGAGG---------------------
|
|
i loxAfr1.scaffold_2979 C 0 I 388
|
|
s echTel1.scaffold_281576 10122 83 + 53044 GGAAGCGCCAAACCTCACAGCTCCA-TCTCCTCTCTGTCAAACAGGTGTGCTCATCGAGCCTGGGGATCTCA-GGAGGCAC-AGTG
|
|
i echTel1.scaffold_281576 I 609 I 32820
|
|
e monDom2.scaffold_22 30316046 3155 - 46578359 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=94727.000000
|
|
s hg17.chr7 127494634 256 + 158628139 CCAGCCATATGGAGCAGAGCCTC-------------CCC-CACGCAGGCCCGAAACAATCATAGA------AGTGGGGGCTCCCTTCCTCTCATGGGCTTGGAC----TTTGCCTCTGGATTTTGGACCCAAAATCTGGAGCCGGTCTGCACAGCCTAGCAATG-ATCTGGGGCTCATGGAAACAGTCTAGGAACC-CC-CACCATACTTCAGGATGGAACAA-TTGAGGGTCCAGCCCAGCCTTGGGGGAGCATG-TCAGGGTG-TTCTTTACTCAGTCAATTTA-
|
|
s panTro1.chr6 129908802 256 + 161576975 TCAGCCATATGGAGCAGAGCCTC-------------CCC-CACGCAGGCCCGAAACAATCATAGA------AGTGGGGGCTCCCTTCCTCTCATGGGCTTGGAC----TTTGCCTCTGGATTTTGGACCCAAAATCTGGAGCCGGTCTGCACAGCCTAGCAATG-ATCTGGGGCTCATGGAAACAGTCTAGGAACC-CC-CACCATACTTCAGGATGGAACAA-TTGAGGGTCCAGCCCAGCCTTGGGGGAGCATG-TCAGGGTG-TTCTTTACTCAGTCAATTTA-
|
|
i panTro1.chr6 C 0 C 0
|
|
s mm7.chr6 29013017 243 + 149646834 ATGTACATAGGAAGCCTAGCCTT-------------TCCACACAGGGGCTTGTGACAGTCAAG--------CCCCCCAGCTCCCTCCCTCTTATGGAGTTAGAC----CATGCC------------ATTAAATCTTTGGAATAGGTCTGCAC--ACTGGTGACTGATCTAGGGAGCATGGAGACAGCCTGGGTCCTCCC-CTCCATGCTTTAGGAAGGCAGGG-TTTGTGATCCCTGCCACCCTTGGCAGAGCGTG-GCAGGGTGTCTTAGTATTCATCCCAGTT--
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56207226 219 + 187371129 ATAGGCATAGGAAGCCTAGCCTT-------------TC--CACAGGGGCTTGTGATAGTCAAG---------CCCCCAGCACTC-CCCTCTTATGGAATTAGAC----CATGAC------------ATTAAAACTTTGAAATAGAGCTGCAC--ACTGGTGACTGAT-------------------CCTGGGTCCT-CC-CTCCATGCTCTAGGAAGGCAGGG-TTTGTGATCCTTGCCACCCTTGGCAGAGTAGG-ACAGGGTGTCTTAGTATTCATCCCAGTT--
|
|
i rn3.chr4 C 0 C 0
|
|
s oryCun1.scaffold_203931 93193 224 - 102346 TGAGCCTTAGCAAGTGGAGCTTC-------------GCCCTGCTCGGAACTGAGATAGTCACA---------GGCGCGTCCCAC-CCCTATC-TGGGCTTGAACTTTGCATGTG------------ACCCCAAATCTGGAAGTGGCCTGCATCGGCCAGCAGTT-AT-------------------CTGGGGTCCC-AG-GAACATCCCTGAGGTGTGGAGGGACTTACGGCCCTTCCCACCCTCAGGGGAGCAGGTGAAGTGTG---CACCAATTAACCCACTT--
|
|
i oryCun1.scaffold_203931 C 0 C 0
|
|
s bosTau2.chr4 19335823 244 - 69556449 TGAGGCATGGGAAGCAGAGACTCCACCC--------TCC-CAC-CAGCCCCAG-----TCACAGAAAGGGGAGCCCC--CTCCCTTCCTCACGTGAGCTTGGAC----CTTG----------GTCAACACAAAATGTGGAACTGGCCTTTAAAACCCACCAATT-ATTTGGAGATCATGAAAACAG---GAAAACT-CC-CTCCACACTTCAGGAAGGAGAGA-TTGATGA-CCGTCCTATCCTTGGGGCAGTGTG-ACAGAGTG-TTTGTGATTTATCCCATGT--
|
|
i bosTau2.chr4 C 0 I 1113
|
|
s canFam2.chr14 52869365 250 - 63938239 TGA-----GTGGAGTTG----CCCACCCCCA-----CCC-CAC-CAGGCCTGAGACCCTGATGGAAAGGGGAAGCCCTGCTCCCTTCCACACTTGGGCTTGGAC----CTTGTA--------TCTGACTCAAAATCTGGAAGTGGTTCTCACAGCCCAGTAATA-ATTTGGAGCTCGGGGGAATGGTCCAGAACCC-AC-CTCGGTACTTCCGGGTAGAGGGA-TTTATGA-CCCTTCCTCCCTTGGAGGAGCAAG-GCAGGGTG-TTTGTTACTTATCCCCTGC--
|
|
i canFam2.chr14 C 0 C 0
|
|
s loxAfr1.scaffold_2979 40939 264 - 113413 TGAGCCACAGAAAGGAGAGTCTGTTCCCCAACCCTGACC-CCCACAGGCCTAAGA----CACAGATCGGGAGCCCCCTCTTCTCTTCCTCATTTGGCCTTCGAC----TTGGCA--------TCTAACCCCAAATCTGCAACTGGTCTTTCCAGCCCAGTAATT-ACTTGGGGCTCACGGAAACAATACAGAAACC-CTGCTCCATACTTCGGGATGGAGCGG-TTTATGATCCTTCCCACCCTTGGTGAAGCACG-gtaaggta-tttactattcatcccattt-a
|
|
i loxAfr1.scaffold_2979 I 388 C 0
|
|
e monDom2.scaffold_22 30316046 3155 - 46578359 I
|
|
e echTel1.scaffold_281576 10205 32820 + 53044 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
|
|
a score=46045.000000
|
|
s hg17.chr7 127494890 285 + 158628139 AATGGATGACAGAACTGACGCTTAGAAGCCTCATAAGACCTGCCCCCAA-ACAACTCACATCTGAGGATTAGAACC---------TGACTTGCAATGCCCAGGTGACATATATATACATGTAGAAATACAAAGACAGAGATTGATAGATATT------TCTTTACTTGCCCCATCTGTGCC-CCAAACACATACACACAGAGATTTCCAGCCGTTT---TCTGCTTGCCCACCCATCCCCACCTCTCC-CCAGAG----GGACATCCATTAGGAAATGCACTTGCAGGCCATGTCTCTATCCTAATGTTG
|
|
s panTro1.chr6 129909058 285 + 161576975 AATGGATGACGGAACTGATGCTTAGAAGCCTCATAAGACCTGCCCCCAA-ACAACTCACATCTGAGGATTAGAACC---------TGACTTGCAATGCCCAGGTGACATATATATACATGTAGAAATACAAAGACAGAGATTGATGGATATT------TCTTTACTTGCCCCATCTGTGCC-CCAAACACATACACACAGAGATTTCCAGCCGTTT---TCTGCTTGCCCACCCATCCCCACCTCTCC-CCAGAG----GGACATCCATTAGGAAATGCACTTGCAGGCCATGTCTCTATCCTAATGTTG
|
|
i panTro1.chr6 C 0 C 0
|
|
s mm7.chr6 29013260 192 + 149646834 ATTGGATA------------------------ATAATGCTTGCCCC----ATAACTCACATCTGAGGATTTGAATC-------TCTGTCCT---ATATCCAGG-------------------------CCAAGATG--GATCCATGTATACCTG---ACCTGAACCCAGCTCATTCCTGCC-CCAAACAC----GCATCCAGATTCCCACTGGTTT---TCAG--------CACGTCCTCTGCTCT---CATCAG-------------------------------AGCCTCATCTCCATCCTAACACTG
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56207445 224 + 187371129 ATTGGATAATGGAACAGAAGCCTAGAGGCCTCATAATGCTTGCCCC----ATAATTCACATCTGAGGATTTGAATC-------TCTGTTCC---ACATCCAGG-------------------------CCAAGATG--GATTCATGTATACCTG---ACCTGAACCCGGCTCCTTCCTGCC-TTAAACAC----GCATTCAGATTTCCACAGGTTT---TCAG--------CACATCCTCTGCTCTCC-CATCAGCC----TCAGCTGGTAGGGAAAGTGTGCGCTAGC---------------------
|
|
i rn3.chr4 C 0 C 0
|
|
s oryCun1.scaffold_203931 93417 193 - 102346 ATTGGAAGACATAACTGAAG-CTAGAGCTCTTGCCAGACTTGCCCCCAAAACAACTCGCATCTGAGAATTTGCACCAGAGCCTTCTGACTC---AGCCCCAGG-------------------------GCGGTACA---------ATATACT-----------GCCCACCCCATCCTCACA-GCACGCAC-----CACATAGACTCCAGCTGCCTTCGGTTTG--------CATTTTTATTTCCCTCC-CCTGGG--gg---------------------------------------------------
|
|
i oryCun1.scaffold_203931 C 0 I 350
|
|
s canFam2.chr14 52869615 212 - 63938239 AATGGATGATG--------GCTTAGAGGTCTCATGAGACTTACCC-----AAGGCTCACATCTGAGGGTTAGAACCTGAGCCTTCAGCTTCAGAATACCCAGG-------------------------CTGA-------------ATGTATTTGCCCATCTTTCCCCACCCCACCCAGGCC--CAAACAC----ACATTCTGTCTGCC-----TTCCCACCAG--------CACCACCTCTCCTCACC-AGAGGA------ATAGCCATCTGGAAAAACACTTGCTGGC---------------------
|
|
i canFam2.chr14 C 0 I 8
|
|
s loxAfr1.scaffold_2979 41203 253 - 113413 -ttggatgagggtactgaggcttagaggccttgaaagacttgccca----aagactcacatccaaggattagaatgtgggccttcagacttgcaatacccagg-------------------------ca-----------ttatacaTACCTG----TCTTTA-TCACCCCATCCCTGCCCCCAAATGCACACACACATATATTTCCAGCTGCCT---TCGGTTTGCCATCCCACCCTGCCCTCCCCATCAGAG----GGGCAGCCATTA-GAAAAGCACTTGCTGCCTATATCACTGCCCTCATG---
|
|
i loxAfr1.scaffold_2979 C 0 I 1762
|
|
e monDom2.scaffold_22 30316046 3155 - 46578359 I
|
|
e echTel1.scaffold_281576 10205 32820 + 53044 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e bosTau2.chr4 19336067 1113 - 69556449 I
|
|
|
|
a score=27648.000000
|
|
s hg17.chr7 127495175 294 + 158628139 TTTTTTGtttgttcttattgtgcttatttgtttggtttagtgatggagtctcactctgtcacccagactggagtgcagtggtgccattatagctcactgcagcctcaaactcctgggctcaagcgatcctcccacctcagactcctgaatggatggaactacaggaacatgccaccatgcctggctaagttttttttttttttagagatggggtcttgctatgttgcccaggctggtctcaaacccttggccttaagtgatcctcccatttcaccctcccaaagtgctgggaAG
|
|
s panTro1.chr6 129909343 294 + 161576975 TTTTTCGTTTGTTCTTATTGTGCTTATTTGTTTGGTTTAGTgatggagtctcactctgtcacccagactggagtgcagtggtgccatcatagctcactgcagcctcaaactcctgggctcaagcgatcctcccacctcagactcctgaatggatggaactacaggaacatgccaccatgcctggctaagttttttttttttttagaggtggggtcttgctatgttgcccaggctggtctcaaacccttggccttaagtgatcctcccatttcaccctcccaaagtgctgggaAG
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30316046 3155 - 46578359 I
|
|
e echTel1.scaffold_281576 10205 32820 + 53044 I
|
|
e loxAfr1.scaffold_2979 41456 1762 - 113413 I
|
|
e canFam2.chr14 52869827 8 - 63938239 I
|
|
e rn3.chr4 56207669 0 + 187371129 C
|
|
e mm7.chr6 29013452 0 + 149646834 C
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e bosTau2.chr4 19336067 1113 - 69556449 I
|
|
e oryCun1.scaffold_203931 93610 350 - 102346 I
|
|
|
|
a score=25062.000000
|
|
s hg17.chr7 127495469 176 + 158628139 TGTCCTAAAGTTGAGGAGCTTACAGCCTGGGTTGACTGTacacacacacacacacacacacacacacacacatatgcacacacacacaGAACTGGCTCCAGGGCTCACCCACAGGTCTGCCCACCTTCCCCACCAGC----ACTGCCGGAAGCCCCCTCCATTAGTCTCCTGTCCTGCTC
|
|
s panTro1.chr6 129909637 158 + 161576975 TGTCCTAAAGTCGAGGAGCTTACAGCCTGGGTTGACTGTacacacacacacaca------------------tatgcacacacacacaGAGCTGGCTCCAGGGCTCACCCACAGGTCTGCCCACCTTCCCCACCAGC----ACTGCCGGAAGCCCCCTCCATTAGTCTCCTGTCCTGCTC
|
|
i panTro1.chr6 C 0 C 0
|
|
s canFam2.chr14 52869835 155 - 63938239 TGTCCTGATGTTGAGGAGCTGCCAGTGTGGGTTGCTTGTACCCTCACACATAAT---------------GTAAGCAGATGCCTGCACAGA--TGGCTCTAGGGTTCACTCATAGGTCTGCTCACCTTCCCCAATAAC----ATT-CCTAAAGCCTCCCGCACTACTCACCTGTCCTT---
|
|
i canFam2.chr14 I 8 C 0
|
|
s mm7.chr6 29013452 112 + 149646834 ----------------------AGGTCTGGG--------ACACACACCCACAGA---------------AGGTCAGAAGGCCTGCACTG---TGGTCTCCAGGTTTGCCCCTAGGTCTG-CTACCTTT--CATT-GCCTGGCTGGCCTCAGACTCTCTCTCATA----------------
|
|
i mm7.chr6 C 0 C 0
|
|
s rn3.chr4 56207669 135 + 187371129 --TCCTGACGCTGAGG---------TCTAGG--------ACACACACTCACAGA---------------AGGTC--AATGCCTGCACTG---TGGTCTCCAAGTTCACGCCTAGGTCTG-CGACCTTTCCCATT-GC----CTGGTCTTGGACTCTCTCTAGTTGTCATCTGCCCAAGGC
|
|
i rn3.chr4 C 0 I 333
|
|
e monDom2.scaffold_22 30316046 3155 - 46578359 I
|
|
e echTel1.scaffold_281576 10205 32820 + 53044 I
|
|
e loxAfr1.scaffold_2979 41456 1762 - 113413 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e bosTau2.chr4 19336067 1113 - 69556449 I
|
|
e oryCun1.scaffold_203931 93610 350 - 102346 I
|
|
|
|
a score=4095.000000
|
|
s hg17.chr7 127495645 41 + 158628139 CTTCTCTGAGATGAAGAGCTCTTTAAATCAT----------------------GGTCATTGTg
|
|
s panTro1.chr6 129909795 41 + 161576975 CTTCTCTAAGATGAAGAGCTCTTTAAATCAT----------------------GGTCATTGTg
|
|
i panTro1.chr6 C 0 C 0
|
|
s mm7.chr6 29013564 60 + 149646834 --TCTCTCTGGTGAAGAACTCTTT-AATAATACTTTTTGAAATTTGTATTTACTACCATTGTG
|
|
i mm7.chr6 C 0 I 158
|
|
s canFam2.chr14 52869990 25 - 63938239 --------GGGCAAGGAGCTCTTTAAATCTC----------------------GG--------
|
|
i canFam2.chr14 C 0 I 14
|
|
e monDom2.scaffold_22 30316046 3155 - 46578359 I
|
|
e echTel1.scaffold_281576 10205 32820 + 53044 I
|
|
e loxAfr1.scaffold_2979 41456 1762 - 113413 I
|
|
e rn3.chr4 56207804 333 + 187371129 I
|
|
e rheMac2.chr3 165805906 10 + 196418989 I
|
|
e bosTau2.chr4 19336067 1113 - 69556449 I
|
|
e oryCun1.scaffold_203931 93610 350 - 102346 I
|
|
|
|
a score=8866.000000
|
|
s hg17.chr7 127495686 34 + 158628139 gctgggtgcggtggctcacaaatgtaatcccagc
|
|
s rheMac2.chr3 165805916 34 + 196418989 gctgggtgcggtggctcacaaatgtaatctgagc
|
|
i rheMac2.chr3 I 10 C 0
|
|
s panTro1.chr6 129909836 34 + 161576975 gctgggcgcggtggctcacaaatgtaatcccagc
|
|
i panTro1.chr6 C 0 C 0
|
|
e monDom2.scaffold_22 30316046 3155 - 46578359 I
|
|
e echTel1.scaffold_281576 10205 32820 + 53044 I
|
|
e loxAfr1.scaffold_2979 41456 1762 - 113413 I
|
|
e canFam2.chr14 52870015 14 - 63938239 I
|
|
e rn3.chr4 56207804 333 + 187371129 I
|
|
e mm7.chr6 29013624 158 + 149646834 I
|
|
e bosTau2.chr4 19336067 1113 - 69556449 I
|
|
e oryCun1.scaffold_203931 93610 350 - 102346 I
|
|
|